Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02630

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
2,923,819	+		MIT1002_02627	0.46	-0.4
2,923,849	+		MIT1002_02627	0.51	-0.1
2,924,004	-		MIT1002_02627	0.78	-0.3
2,924,026	+		MIT1002_02627	0.82	-2.1
2,924,034	-		MIT1002_02627	0.83	+0.5
2,924,040	+		MIT1002_02627	0.84	-2.4
2,924,045	+		MIT1002_02627	0.85	-1.0
2,924,045	+		MIT1002_02627	0.85	-1.8
2,924,045	+		MIT1002_02627	0.85	+0.1
2,924,047	+		MIT1002_02627	0.86	+0.6
2,924,055	-		MIT1002_02627	0.87	-0.6
2,924,075	+				-0.0
2,924,081	-				-0.2
2,924,120	-				-0.3
2,924,178	-				-0.4
2,924,183	+				+1.5
2,924,191	-				-0.3
2,924,269	+		MIT1002_02628	0.14	+0.1
2,924,277	-		MIT1002_02628	0.18	-0.0
2,924,337	+		MIT1002_02628	0.48	+1.5
2,924,345	-		MIT1002_02628	0.51	-2.1
2,924,352	+		MIT1002_02628	0.55	-2.4
2,924,352	+		MIT1002_02628	0.55	+0.5
2,924,352	+		MIT1002_02628	0.55	-0.4
2,924,352	+		MIT1002_02628	0.55	+0.6
2,924,354	+		MIT1002_02628	0.56	+0.2
2,924,354	+		MIT1002_02628	0.56	-0.1
2,924,360	-		MIT1002_02628	0.59	+0.2
2,924,360	-		MIT1002_02628	0.59	-1.7
2,924,360	-		MIT1002_02628	0.59	-0.7
2,924,360	-		MIT1002_02628	0.59	+1.5
2,924,360	-		MIT1002_02628	0.59	+0.4
2,924,360	-		MIT1002_02628	0.59	-0.9
2,924,360	-		MIT1002_02628	0.59	-0.1
2,924,360	-		MIT1002_02628	0.59	-0.3
2,924,362	-		MIT1002_02628	0.60	+1.0
2,924,428	+				-0.3
2,924,440	+				+2.1
2,924,448	-				-0.4
2,924,448	-				-0.5
2,924,554	+				-0.4
2,924,554	+				+0.7
2,924,554	+				-0.1
2,924,554	+				-0.1
2,924,556	+				-0.8
2,924,562	-		MIT1002_02629	0.11	-0.2
2,924,562	-		MIT1002_02629	0.11	-1.0
2,924,562	-		MIT1002_02629	0.11	-0.3
2,924,562	-		MIT1002_02629	0.11	+1.0
2,924,597	-		MIT1002_02629	0.24	-2.2
2,924,632	+		MIT1002_02629	0.37	-1.0
2,924,640	-		MIT1002_02629	0.40	-0.2
2,924,657	+		MIT1002_02629	0.47	+2.8
2,924,686	+		MIT1002_02629	0.58	-0.7
2,924,696	+		MIT1002_02629	0.61	-1.6
2,924,704	-		MIT1002_02629	0.64	+0.0
2,924,721	+		MIT1002_02629	0.71	+0.5
2,924,801	-				-0.6
2,924,967	+		MIT1002_02630	0.64	-0.5
2,925,044	-				+0.4
2,925,059	+				-1.5
2,925,059	+				-0.8
2,925,067	-				+0.0
2,925,067	-				-1.7
2,925,079	+				+0.2
2,925,147	+				-1.0
2,925,157	+				-2.6
2,925,190	+				-0.0
2,925,227	-				-4.2
2,925,330	+				-2.2
2,925,333	+				-0.8
2,925,396	-				-2.5
2,925,469	-				-3.4
2,925,522	+				-3.9
2,925,522	-				-9.4
2,925,522	-				-4.8
2,925,524	+				-5.7
2,925,551	-		MIT1002_02632	0.11	-3.5
2,925,622	+		MIT1002_02632	0.19	-2.6
2,925,644	-		MIT1002_02632	0.21	-4.9
2,925,654	+		MIT1002_02632	0.22	-1.0
2,925,654	-		MIT1002_02632	0.22	-5.6
2,925,662	-		MIT1002_02632	0.23	-5.1
2,925,735	+		MIT1002_02632	0.31	-2.2
2,925,735	+		MIT1002_02632	0.31	-2.9
2,925,735	+		MIT1002_02632	0.31	-0.8
2,925,735	+		MIT1002_02632	0.31	-2.6
2,925,735	-		MIT1002_02632	0.31	-3.0
2,925,738	-		MIT1002_02632	0.32	-5.8
2,925,745	+		MIT1002_02632	0.32	-1.9
2,925,745	+		MIT1002_02632	0.32	-1.0
2,925,765	+		MIT1002_02632	0.35	-3.0
2,925,839	+		MIT1002_02632	0.43	-0.8
2,925,888	-		MIT1002_02632	0.48	-2.0
2,925,901	-		MIT1002_02632	0.50	-5.4
2,925,902	-		MIT1002_02632	0.50	-2.7
2,925,913	-		MIT1002_02632	0.51	-2.5
2,925,918	-		MIT1002_02632	0.51	-2.8
2,925,918	-		MIT1002_02632	0.51	-2.0
2,925,937	+		MIT1002_02632	0.54	-2.6
2,925,944	-		MIT1002_02632	0.54	-3.3
2,925,945	-		MIT1002_02632	0.54	-4.1
2,925,973	+		MIT1002_02632	0.58	-3.9