Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02574

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
2,872,759	+		MIT1002_02573	0.64	-2.0
2,872,844	+		MIT1002_02573	0.71	-4.4
2,872,866	-		MIT1002_02573	0.72	-4.1
2,872,866	-		MIT1002_02573	0.72	-2.8
2,872,876	+		MIT1002_02573	0.73	-5.6
2,872,944	-		MIT1002_02573	0.79	-2.6
2,872,974	+		MIT1002_02573	0.81	-0.1
2,872,976	+		MIT1002_02573	0.82	-2.3
2,872,981	+		MIT1002_02573	0.82	-2.3
2,872,984	-		MIT1002_02573	0.82	-2.1
2,872,984	-		MIT1002_02573	0.82	-3.4
2,872,989	-		MIT1002_02573	0.83	-0.8
2,873,080	-				-4.0
2,873,144	-				-3.3
2,873,159	-				-3.0
2,873,159	-				-1.7
2,873,296	+				+0.7
2,873,351	+				-0.1
2,873,444	+				+0.6
2,873,452	-				+0.1
2,873,452	-				+1.1
2,873,578	+				+0.1
2,873,586	-				-2.6
2,873,591	-				-1.0
2,873,609	+				-0.5
2,873,681	+				-0.8
2,873,722	-				-1.9
2,873,722	-				+0.4
2,873,724	+				-0.8
2,873,754	+				+0.3
2,873,831	+		MIT1002_02574	0.15	-0.2
2,873,835	-		MIT1002_02574	0.15	-2.4
2,873,850	+		MIT1002_02574	0.16	+1.2
2,873,891	+		MIT1002_02574	0.19	+0.2
2,873,900	+		MIT1002_02574	0.20	+0.6
2,873,908	-		MIT1002_02574	0.20	+0.2
2,874,059	+		MIT1002_02574	0.31	+1.1
2,874,059	+		MIT1002_02574	0.31	-0.9
2,874,075	+		MIT1002_02574	0.32	-0.5
2,874,075	+		MIT1002_02574	0.32	+1.4
2,874,083	-		MIT1002_02574	0.32	+0.6
2,874,101	+		MIT1002_02574	0.33	-0.3
2,874,144	-		MIT1002_02574	0.36	+0.2
2,874,167	-		MIT1002_02574	0.38	+2.1
2,874,177	+		MIT1002_02574	0.39	+0.7
2,874,182	+		MIT1002_02574	0.39	-1.8
2,874,201	-		MIT1002_02574	0.40	-0.1
2,874,241	+		MIT1002_02574	0.43	-1.0
2,874,291	-		MIT1002_02574	0.46	-0.4
2,874,303	-		MIT1002_02574	0.47	-0.4
2,874,478	+		MIT1002_02574	0.59	-1.9
2,874,486	-		MIT1002_02574	0.60	-0.4
2,874,486	-		MIT1002_02574	0.60	-0.1
2,874,509	+		MIT1002_02574	0.61	-0.5
2,874,512	-		MIT1002_02574	0.62	-0.3
2,874,612	+		MIT1002_02574	0.68	-2.2
2,874,612	+		MIT1002_02574	0.68	-3.8
2,874,614	+		MIT1002_02574	0.69	+1.3
2,874,622	-		MIT1002_02574	0.69	+0.8
2,874,622	-		MIT1002_02574	0.69	+0.4
2,874,707	+		MIT1002_02574	0.75	+0.4
2,874,847	-		MIT1002_02574	0.84	+1.3
2,874,902	+		MIT1002_02574	0.88	-1.1
2,874,904	-		MIT1002_02574	0.88	+0.3
2,875,017	+				+0.2
2,875,018	+				-1.3
2,875,018	+				+0.7
2,875,018	+				-3.6
2,875,071	-				+2.4
2,875,071	-				-0.2
2,875,071	-				-0.8
2,875,093	+				-0.1
2,875,093	+				-0.3
2,875,101	-				-0.2
2,875,101	-				-0.1
2,875,101	-				+1.4
2,875,172	-				+0.9
2,875,242	+				+0.5
2,875,288	+				-0.2
2,875,288	+				+1.5
2,875,288	+				-0.8
2,875,288	+				+1.7
2,875,288	+				+0.1
2,875,288	+				-0.4
2,875,296	-		MIT1002_02575	0.10	-1.7
2,875,296	-		MIT1002_02575	0.10	-3.2
2,875,296	-		MIT1002_02575	0.10	+0.6
2,875,296	-		MIT1002_02575	0.10	-0.1
2,875,296	-		MIT1002_02575	0.10	-1.7
2,875,296	-		MIT1002_02575	0.10	+0.8
2,875,393	+		MIT1002_02575	0.17	+0.5
2,875,426	+		MIT1002_02575	0.19	+0.3
2,875,429	-		MIT1002_02575	0.19	-1.0
2,875,429	-		MIT1002_02575	0.19	+0.8
2,875,429	-		MIT1002_02575	0.19	+0.1
2,875,505	-		MIT1002_02575	0.25	-0.3
2,875,522	+		MIT1002_02575	0.26	+0.9
2,875,525	+		MIT1002_02575	0.26	+1.1
2,875,533	-		MIT1002_02575	0.27	-3.0
2,875,533	-		MIT1002_02575	0.27	+1.1
2,875,535	+		MIT1002_02575	0.27	-0.5
2,875,535	+		MIT1002_02575	0.27	+0.7
2,875,559	+		MIT1002_02575	0.28	+0.5
2,875,566	+		MIT1002_02575	0.29	+1.0
2,875,588	-		MIT1002_02575	0.30	-0.5
2,875,611	-		MIT1002_02575	0.32	-0.6
2,875,613	+		MIT1002_02575	0.32	-1.1
2,875,758	+		MIT1002_02575	0.42	-0.5
2,875,794	-		MIT1002_02575	0.45	+0.5
2,875,914	+		MIT1002_02575	0.53	+1.1
2,875,915	+		MIT1002_02575	0.53	-1.3
2,875,923	-		MIT1002_02575	0.54	-1.3
2,876,057	-		MIT1002_02575	0.63	+0.0