Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02512

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
2,799,704	+				+0.4
2,799,712	-				+0.1
2,799,716	+				+0.3
2,799,726	+				-0.0
2,799,772	-				-0.3
2,799,899	-				-2.3
2,800,001	-				-0.1
2,800,020	+				-2.0
2,800,028	-				-1.9
2,800,115	+				-0.5
2,800,118	-				-0.1
2,800,120	+				+0.8
2,800,128	-				+0.0
2,800,198	+		MIT1002_02511	0.17	-0.3
2,800,252	-		MIT1002_02511	0.30	+0.3
2,800,309	-		MIT1002_02511	0.43	+0.4
2,800,368	+		MIT1002_02511	0.57	+0.4
2,800,418	+		MIT1002_02511	0.68	-1.6
2,800,443	+		MIT1002_02511	0.74	-0.5
2,800,443	+		MIT1002_02511	0.74	+1.5
2,800,493	+		MIT1002_02511	0.86	+0.2
2,800,511	-				+0.4
2,800,578	+				+2.0
2,800,597	+				+0.3
2,800,598	-				+0.5
2,800,605	-				+0.3
2,800,641	-				+2.4
2,800,641	-				+0.2
2,800,713	+				-2.0
2,800,796	+		MIT1002_02512	0.12	-0.1
2,800,796	+		MIT1002_02512	0.12	+1.2
2,800,796	+		MIT1002_02512	0.12	+0.8
2,800,801	+		MIT1002_02512	0.12	+0.3
2,800,806	+		MIT1002_02512	0.13	-0.1
2,800,806	+		MIT1002_02512	0.13	+0.2
2,800,814	-		MIT1002_02512	0.14	-0.1
2,800,814	-		MIT1002_02512	0.14	+1.3
2,800,814	-		MIT1002_02512	0.14	+0.3
2,800,814	-		MIT1002_02512	0.14	+0.5
2,800,814	-		MIT1002_02512	0.14	-0.0
2,800,814	-		MIT1002_02512	0.14	+0.3
2,800,814	-		MIT1002_02512	0.14	+1.1
2,800,816	-		MIT1002_02512	0.14	+0.4
2,800,893	-		MIT1002_02512	0.22	+0.5
2,800,893	-		MIT1002_02512	0.22	-0.3
2,800,893	-		MIT1002_02512	0.22	+0.6
2,800,900	-		MIT1002_02512	0.23	+0.0
2,800,900	-		MIT1002_02512	0.23	-2.1
2,800,996	+		MIT1002_02512	0.34	+0.0
2,801,051	-		MIT1002_02512	0.40	+0.3
2,801,113	+		MIT1002_02512	0.47	+0.2
2,801,113	+		MIT1002_02512	0.47	+0.4
2,801,233	+		MIT1002_02512	0.60	-0.2
2,801,260	+		MIT1002_02512	0.63	+0.2
2,801,265	+		MIT1002_02512	0.63	+2.2
2,801,332	-		MIT1002_02512	0.71	-0.4
2,801,394	-		MIT1002_02512	0.78	-3.0
2,801,394	-		MIT1002_02512	0.78	+0.1
2,801,421	-		MIT1002_02512	0.81	-0.4
2,801,514	-				-1.5
2,801,631	-				-0.2
2,801,800	-				-0.5
2,801,837	+				+1.0
2,801,889	+				+2.4
2,801,889	+				+2.0
2,801,889	+				-1.3
2,801,889	+				+0.7
2,801,889	+				-2.7
2,801,889	+				-0.2
2,801,889	+				-0.1
2,801,889	+				-3.3
2,801,889	+				+0.5
2,801,889	+				-0.6
2,801,889	+				+1.5
2,801,897	-				-0.9
2,801,897	-				-0.8
2,801,897	-				+0.3
2,801,897	-				-3.4
2,801,897	-				+1.4
2,801,897	-				-0.4
2,801,897	-				+1.2
2,801,897	-				-0.1
2,801,897	-				+1.0
2,801,897	-				+0.6
2,801,897	-				-1.1
2,801,897	-				+0.1
2,801,932	-				-3.1
2,801,989	-				-0.2
2,802,009	+				+0.1
2,802,039	+				-0.2
2,802,138	-				-0.3
2,802,140	+				+0.7
2,802,196	+		MIT1002_02513	0.10	-1.1
2,802,229	-		MIT1002_02513	0.12	-0.4
2,802,231	+		MIT1002_02513	0.12	-1.7
2,802,231	+		MIT1002_02513	0.12	+0.3
2,802,239	-		MIT1002_02513	0.12	+0.3
2,802,249	+		MIT1002_02513	0.13	+1.2
2,802,256	+		MIT1002_02513	0.13	-1.5
2,802,264	-		MIT1002_02513	0.14	+0.4
2,802,264	-		MIT1002_02513	0.14	+0.1
2,802,386	+		MIT1002_02513	0.20	-0.1
2,802,394	-		MIT1002_02513	0.20	-0.5
2,802,410	+		MIT1002_02513	0.21	-0.5
2,802,508	-		MIT1002_02513	0.25	-0.2
2,802,558	-		MIT1002_02513	0.28	+0.6