Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02504

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
2,792,233	+				+1.2
2,792,291	+				-1.8
2,792,301	+				-1.0
2,792,301	+				+3.9
2,792,309	-				-1.5
2,792,415	-		MIT1002_02503	0.18	+0.9
2,792,434	+		MIT1002_02503	0.21	-0.2
2,792,451	+		MIT1002_02503	0.23	-2.6
2,792,569	+		MIT1002_02503	0.43	+0.6
2,792,569	+		MIT1002_02503	0.43	-0.4
2,792,570	-		MIT1002_02503	0.43	-0.1
2,792,577	-		MIT1002_02503	0.44	+0.3
2,792,590	+		MIT1002_02503	0.46	-1.0
2,792,596	-		MIT1002_02503	0.47	+1.3
2,792,596	-		MIT1002_02503	0.47	+1.4
2,792,642	+		MIT1002_02503	0.54	-0.9
2,792,651	+		MIT1002_02503	0.56	-1.3
2,792,678	-		MIT1002_02503	0.60	-1.4
2,792,689	+		MIT1002_02503	0.62	-1.1
2,792,689	+		MIT1002_02503	0.62	-1.6
2,792,689	+		MIT1002_02503	0.62	+0.8
2,792,692	-		MIT1002_02503	0.63	+2.0
2,792,697	-		MIT1002_02503	0.63	+1.5
2,792,697	-		MIT1002_02503	0.63	-3.0
2,792,697	-		MIT1002_02503	0.63	+0.1
2,792,709	-		MIT1002_02503	0.65	-1.1
2,792,718	+		MIT1002_02503	0.67	-0.1
2,792,803	-		MIT1002_02503	0.81	+0.1
2,792,854	+		MIT1002_02503	0.89	-1.3
2,792,914	+				+0.9
2,793,026	-				-1.9
2,793,155	+		MIT1002_02504	0.12	+0.9
2,793,268	-		MIT1002_02504	0.19	-0.5
2,793,295	+		MIT1002_02504	0.20	+0.1
2,793,303	-		MIT1002_02504	0.21	-0.5
2,793,378	+		MIT1002_02504	0.25	-0.7
2,793,378	+		MIT1002_02504	0.25	-1.0
2,793,400	+		MIT1002_02504	0.26	-0.1
2,793,400	+		MIT1002_02504	0.26	+0.6
2,793,408	-		MIT1002_02504	0.26	-0.3
2,793,447	+		MIT1002_02504	0.29	-0.2
2,793,455	-		MIT1002_02504	0.29	+0.5
2,793,508	+		MIT1002_02504	0.32	+1.1
2,793,533	+		MIT1002_02504	0.34	-0.3
2,793,549	+		MIT1002_02504	0.34	-0.7
2,793,555	-		MIT1002_02504	0.35	-0.6
2,793,667	+		MIT1002_02504	0.41	+0.1
2,793,801	-		MIT1002_02504	0.49	+0.1
2,793,812	-		MIT1002_02504	0.49	-2.4
2,793,916	+		MIT1002_02504	0.55	+0.1
2,793,986	+		MIT1002_02504	0.59	-1.0
2,793,986	+		MIT1002_02504	0.59	+1.8
2,793,986	+		MIT1002_02504	0.59	+1.7
2,793,994	-		MIT1002_02504	0.60	+0.5
2,794,040	-		MIT1002_02504	0.62	+0.4
2,794,040	-		MIT1002_02504	0.62	-1.1
2,794,161	+		MIT1002_02504	0.69	-0.3
2,794,161	+		MIT1002_02504	0.69	+0.0
2,794,201	-		MIT1002_02504	0.71	+0.6
2,794,201	-		MIT1002_02504	0.71	+0.5
2,794,220	+		MIT1002_02504	0.72	-0.8
2,794,226	+		MIT1002_02504	0.73	-0.2
2,794,244	-		MIT1002_02504	0.74	-1.1
2,794,340	+		MIT1002_02504	0.79	+0.7
2,794,398	-		MIT1002_02504	0.82	+1.8
2,794,443	+		MIT1002_02504	0.85	+1.3
2,794,505	+		MIT1002_02504	0.88	+1.0
2,794,513	-		MIT1002_02504	0.89	+2.3
2,794,534	+				+0.5
2,794,534	+				-0.8
2,794,542	-				-0.2
2,794,542	-				+2.3
2,794,553	+				+0.4
2,794,607	-				-0.5
2,794,622	+				-1.6
2,794,624	-				+0.7
2,794,624	-				-1.3
2,794,630	-				+0.1
2,794,645	-				+0.3
2,794,702	-				-3.3
2,794,759	-				-1.1
2,794,862	+				-1.3
2,794,907	+				-1.1
2,794,962	+		MIT1002_02505	0.30	-0.9
2,794,982	-		MIT1002_02505	0.38	-1.3
2,794,982	-		MIT1002_02505	0.38	-0.7
2,794,983	+		MIT1002_02505	0.38	+0.7
2,795,007	+		MIT1002_02505	0.47	+3.3
2,795,015	-		MIT1002_02505	0.50	+1.8
2,795,025	+		MIT1002_02505	0.54	-0.5
2,795,025	+		MIT1002_02505	0.54	+1.3
2,795,033	-		MIT1002_02505	0.57	+0.7
2,795,076	+		MIT1002_02505	0.74	+0.6
2,795,130	+				+0.2
2,795,166	+				-0.7
2,795,223	-				+0.9
2,795,243	+				-0.5
2,795,251	-				+0.4
2,795,271	-				+1.1
2,795,271	-				+0.3
2,795,271	-				-0.9
2,795,298	-				+0.5
2,795,305	-				+1.3
2,795,352	+				+0.4
2,795,432	+		MIT1002_02506	0.32	+0.9
2,795,440	-		MIT1002_02506	0.36	+0.1