Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02463

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
2,753,859	+		MIT1002_02462	0.57	+0.4
2,753,924	+		MIT1002_02462	0.61	-2.0
2,753,927	+		MIT1002_02462	0.61	+0.1
2,753,927	+		MIT1002_02462	0.61	-0.6
2,753,930	-		MIT1002_02462	0.61	-1.4
2,753,958	-		MIT1002_02462	0.62	-1.5
2,753,958	-		MIT1002_02462	0.62	-1.2
2,753,987	-		MIT1002_02462	0.64	-0.5
2,754,004	-		MIT1002_02462	0.65	+0.3
2,754,018	-		MIT1002_02462	0.65	+0.5
2,754,052	+		MIT1002_02462	0.67	-0.2
2,754,052	+		MIT1002_02462	0.67	-2.9
2,754,060	-		MIT1002_02462	0.68	-0.1
2,754,060	-		MIT1002_02462	0.68	+0.5
2,754,096	-		MIT1002_02462	0.70	+0.9
2,754,137	-		MIT1002_02462	0.72	-2.1
2,754,184	-		MIT1002_02462	0.74	+1.4
2,754,208	+		MIT1002_02462	0.76	-0.5
2,754,224	+		MIT1002_02462	0.76	+0.0
2,754,405	+		MIT1002_02462	0.86	+1.7
2,754,405	+		MIT1002_02462	0.86	-0.4
2,754,413	-		MIT1002_02462	0.86	+1.0
2,754,421	+		MIT1002_02462	0.87	+0.5
2,754,476	+		MIT1002_02462	0.90	+0.5
2,754,483	-				-0.4
2,754,483	-				+0.0
2,754,484	-				-0.2
2,754,587	-				-2.4
2,754,614	+				-0.5
2,754,838	-				-0.5
2,754,898	+		MIT1002_02463	0.12	-2.6
2,754,898	+		MIT1002_02463	0.12	+1.6
2,754,898	+		MIT1002_02463	0.12	-0.5
2,754,898	+		MIT1002_02463	0.12	-1.1
2,754,906	-		MIT1002_02463	0.14	-0.1
2,754,906	-		MIT1002_02463	0.14	+0.9
2,754,906	-		MIT1002_02463	0.14	+1.2
2,754,906	-		MIT1002_02463	0.14	-2.9
2,754,906	-		MIT1002_02463	0.14	-0.9
2,754,906	-		MIT1002_02463	0.14	+1.4
2,754,932	+		MIT1002_02463	0.18	+0.9
2,754,952	+		MIT1002_02463	0.21	+1.2
2,754,967	-		MIT1002_02463	0.23	+0.9
2,754,977	-		MIT1002_02463	0.24	+3.7
2,754,977	-		MIT1002_02463	0.24	+0.8
2,754,977	-		MIT1002_02463	0.24	+0.6
2,754,979	-		MIT1002_02463	0.25	+1.7
2,754,984	-		MIT1002_02463	0.25	+0.8
2,755,009	-		MIT1002_02463	0.29	-0.8
2,755,031	-		MIT1002_02463	0.32	-2.5
2,755,052	-		MIT1002_02463	0.35	+0.1
2,755,125	+		MIT1002_02463	0.46	+2.1
2,755,125	+		MIT1002_02463	0.46	+0.4
2,755,133	-		MIT1002_02463	0.47	+0.9
2,755,178	+		MIT1002_02463	0.54	+0.8
2,755,187	+		MIT1002_02463	0.56	-0.8
2,755,443	+				+1.4
2,755,443	+				-0.7
2,755,443	+				-1.4
2,755,451	-				+0.7
2,755,602	-				+0.4
2,755,602	-				+1.2
2,755,658	+				+0.4
2,755,668	-				+0.7
2,755,674	-				+0.2
2,755,717	+				-1.0
2,755,752	+				+2.7
2,755,774	+				+0.4
2,755,774	+				-2.4
2,755,774	+				+0.0
2,755,797	+				+1.5
2,755,805	-				-0.3
2,755,898	-		MIT1002_02464	0.12	+0.5
2,755,913	-		MIT1002_02464	0.13	-0.9
2,755,923	+		MIT1002_02464	0.14	+0.1
2,755,936	+		MIT1002_02464	0.15	+1.2
2,755,979	+		MIT1002_02464	0.18	-1.0
2,755,979	+		MIT1002_02464	0.18	-0.7
2,755,987	-		MIT1002_02464	0.18	+0.4
2,756,001	-		MIT1002_02464	0.19	-0.8
2,756,028	-		MIT1002_02464	0.21	-2.0
2,756,059	+		MIT1002_02464	0.23	+1.1
2,756,067	-		MIT1002_02464	0.23	-0.4
2,756,067	-		MIT1002_02464	0.23	+1.7
2,756,067	-		MIT1002_02464	0.23	+0.6
2,756,077	-		MIT1002_02464	0.24	+0.7
2,756,082	+		MIT1002_02464	0.24	+1.4
2,756,103	+		MIT1002_02464	0.26	+1.3
2,756,172	+		MIT1002_02464	0.30	+0.4
2,756,172	+		MIT1002_02464	0.30	-3.9
2,756,221	+		MIT1002_02464	0.34	-0.2
2,756,221	+		MIT1002_02464	0.34	-1.6
2,756,229	-		MIT1002_02464	0.34	+0.9
2,756,229	-		MIT1002_02464	0.34	+0.9
2,756,287	+		MIT1002_02464	0.38	+1.1
2,756,327	+		MIT1002_02464	0.41	+0.4
2,756,449	+		MIT1002_02464	0.49	-2.1
2,756,449	+		MIT1002_02464	0.49	+1.8
2,756,452	-		MIT1002_02464	0.49	+1.0
2,756,457	-		MIT1002_02464	0.49	+0.1