Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02450

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
2,734,044	-		MIT1002_02449	0.41	-1.4
2,734,126	-		MIT1002_02449	0.48	-0.1
2,734,138	-		MIT1002_02449	0.49	+0.6
2,734,140	-		MIT1002_02449	0.49	+2.3
2,734,264	-		MIT1002_02449	0.60	-1.0
2,734,290	+		MIT1002_02449	0.62	-0.0
2,734,298	-		MIT1002_02449	0.63	+1.4
2,734,322	-		MIT1002_02449	0.65	+0.6
2,734,322	-		MIT1002_02449	0.65	+0.9
2,734,349	+		MIT1002_02449	0.67	+0.1
2,734,357	-		MIT1002_02449	0.68	-0.4
2,734,387	+		MIT1002_02449	0.70	-0.5
2,734,397	+		MIT1002_02449	0.71	-1.9
2,734,448	+		MIT1002_02449	0.75	+0.3
2,734,448	+		MIT1002_02449	0.75	-0.6
2,734,448	+		MIT1002_02449	0.75	-0.1
2,734,448	+		MIT1002_02449	0.75	-1.2
2,734,448	+		MIT1002_02449	0.75	+1.0
2,734,448	+		MIT1002_02449	0.75	+1.8
2,734,448	+		MIT1002_02449	0.75	+0.9
2,734,456	-		MIT1002_02449	0.76	-0.7
2,734,456	-		MIT1002_02449	0.76	-0.6
2,734,456	-		MIT1002_02449	0.76	+0.7
2,734,456	-		MIT1002_02449	0.76	+0.8
2,734,456	-		MIT1002_02449	0.76	-0.4
2,734,456	-		MIT1002_02449	0.76	+0.9
2,734,456	-		MIT1002_02449	0.76	-0.8
2,734,456	-		MIT1002_02449	0.76	-0.0
2,734,456	-		MIT1002_02449	0.76	-0.6
2,734,481	+		MIT1002_02449	0.78	-0.3
2,734,502	-		MIT1002_02449	0.80	-1.7
2,734,511	+		MIT1002_02449	0.81	-1.1
2,734,526	+		MIT1002_02449	0.82	+1.2
2,734,534	-		MIT1002_02449	0.82	-0.1
2,734,534	-		MIT1002_02449	0.82	+0.8
2,734,534	-		MIT1002_02449	0.82	-1.2
2,734,553	-		MIT1002_02449	0.84	-0.0
2,734,600	-		MIT1002_02449	0.88	+0.2
2,734,606	-		MIT1002_02449	0.88	-0.3
2,734,616	+		MIT1002_02449	0.89	+1.9
2,734,616	+		MIT1002_02449	0.89	-3.1
2,734,616	+		MIT1002_02449	0.89	-0.4
2,734,624	-				-2.4
2,734,624	-				+0.5
2,734,636	-				-2.6
2,734,732	+				+0.1
2,734,815	-				+1.4
2,734,823	+				+0.2
2,734,823	+				+1.1
2,734,823	+				-1.7
2,734,831	-				-0.2
2,734,845	-				+1.4
2,734,855	+				+0.9
2,734,855	+				-1.1
2,734,863	-				+1.3
2,734,871	+				+1.4
2,734,886	+				+0.6
2,734,894	-				-0.1
2,734,899	+				-0.5
2,734,966	-				+0.6
2,735,027	+				+0.3
2,735,137	-		MIT1002_02450	0.16	+0.5
2,735,191	+		MIT1002_02450	0.19	-2.0
2,735,213	+		MIT1002_02450	0.21	+1.0
2,735,221	-		MIT1002_02450	0.21	-0.1
2,735,231	-		MIT1002_02450	0.22	+0.3
2,735,286	+		MIT1002_02450	0.25	+1.6
2,735,291	+		MIT1002_02450	0.26	-0.6
2,735,291	+		MIT1002_02450	0.26	+0.8
2,735,299	-		MIT1002_02450	0.26	-0.3
2,735,391	+		MIT1002_02450	0.32	-0.9
2,735,399	-		MIT1002_02450	0.33	-0.6
2,735,546	+		MIT1002_02450	0.42	-0.2
2,735,596	+		MIT1002_02450	0.45	+0.6
2,735,604	-		MIT1002_02450	0.46	+0.1
2,735,645	-		MIT1002_02450	0.48	+0.6
2,735,658	+		MIT1002_02450	0.49	-1.4
2,735,681	+		MIT1002_02450	0.51	-1.6
2,735,681	+		MIT1002_02450	0.51	-1.0
2,735,681	-		MIT1002_02450	0.51	+1.4
2,735,689	-		MIT1002_02450	0.51	+0.3
2,735,704	-		MIT1002_02450	0.52	+0.7
2,735,706	+		MIT1002_02450	0.52	+0.1
2,735,714	-		MIT1002_02450	0.53	+0.5
2,735,722	-		MIT1002_02450	0.53	+0.6
2,735,768	-		MIT1002_02450	0.56	+0.1
2,735,784	-		MIT1002_02450	0.57	+0.8
2,735,825	-		MIT1002_02450	0.60	+0.1
2,735,897	+		MIT1002_02450	0.64	+0.8
2,736,004	+		MIT1002_02450	0.71	-2.1
2,736,042	+		MIT1002_02450	0.74	+2.6
2,736,042	+		MIT1002_02450	0.74	+0.0
2,736,152	+		MIT1002_02450	0.81	+0.1
2,736,167	+		MIT1002_02450	0.82	+0.0
2,736,175	-		MIT1002_02450	0.82	-0.5
2,736,190	+		MIT1002_02450	0.83	-0.6
2,736,212	-		MIT1002_02450	0.84	+0.5
2,736,212	-		MIT1002_02450	0.84	+0.2
2,736,234	+		MIT1002_02450	0.86	-0.5
2,736,262	+		MIT1002_02450	0.88	-0.3
2,736,310	+				+0.2
2,736,326	+				-1.0
2,736,351	-				+0.9
2,736,412	-				+0.0
2,736,514	+				-0.3
2,736,514	+				+0.2
2,736,514	+				+1.6
2,736,522	-				-1.4
2,736,637	-		MIT1002_02451	0.15	+1.4
2,736,637	-		MIT1002_02451	0.15	-2.3
2,736,660	-		MIT1002_02451	0.17	+0.5
2,736,694	-		MIT1002_02451	0.21	-1.1
2,736,696	+		MIT1002_02451	0.21	-0.4
2,736,736	-		MIT1002_02451	0.26	-0.2
2,736,795	-		MIT1002_02451	0.32	-0.3
2,736,797	+		MIT1002_02451	0.33	-0.3
2,736,843	-		MIT1002_02451	0.38	-1.5
2,736,940	-		MIT1002_02451	0.49	+0.0
2,736,956	+		MIT1002_02451	0.51	+0.7
2,736,964	-		MIT1002_02451	0.51	+0.2
2,736,998	-		MIT1002_02451	0.55	+0.9
2,737,066	-		MIT1002_02451	0.63	-0.5
2,737,114	-		MIT1002_02451	0.68	-0.5
2,737,227	+		MIT1002_02451	0.81	+0.8
2,737,261	-		MIT1002_02451	0.85	-2.9
2,737,261	-		MIT1002_02451	0.85	+1.2
2,737,294	-		MIT1002_02451	0.89	-3.2
2,737,324	-				+0.7
2,737,353	+				+0.1
2,737,361	-				+1.4