Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02412

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
2,693,091	-				+0.8
2,693,185	-				+0.3
2,693,196	+				+2.2
2,693,281	+		MIT1002_02411	0.27	+0.8
2,693,303	+		MIT1002_02411	0.33	+2.1
2,693,316	+		MIT1002_02411	0.36	+1.4
2,693,316	+		MIT1002_02411	0.36	+0.1
2,693,316	+		MIT1002_02411	0.36	+0.7
2,693,316	+		MIT1002_02411	0.36	-0.3
2,693,321	+		MIT1002_02411	0.37	-0.2
2,693,324	-		MIT1002_02411	0.38	-0.9
2,693,324	-		MIT1002_02411	0.38	+0.6
2,693,326	+		MIT1002_02411	0.39	+0.8
2,693,326	+		MIT1002_02411	0.39	-0.2
2,693,334	-		MIT1002_02411	0.41	+1.3
2,693,338	+		MIT1002_02411	0.42	-1.7
2,693,443	+		MIT1002_02411	0.70	+0.7
2,693,530	-				-0.6
2,693,540	-				-2.1
2,693,718	+				-0.2
2,693,841	-				+0.0
2,693,942	+				+1.0
2,693,947	+				-0.6
2,693,950	-				-2.2
2,693,955	-				+0.1
2,693,955	-				+0.1
2,694,074	+				+0.7
2,694,082	-				-0.1
2,694,082	-				-0.1
2,694,082	-				+1.1
2,694,082	-				-2.1
2,694,145	-				-0.7
2,694,157	-		MIT1002_02412	0.11	+1.0
2,694,160	+		MIT1002_02412	0.11	-0.6
2,694,160	+		MIT1002_02412	0.11	+0.3
2,694,160	+		MIT1002_02412	0.11	-0.8
2,694,165	+		MIT1002_02412	0.11	+1.3
2,694,168	-		MIT1002_02412	0.12	+0.7
2,694,186	-		MIT1002_02412	0.13	+0.9
2,694,375	+		MIT1002_02412	0.28	-0.7
2,694,395	+		MIT1002_02412	0.30	+0.5
2,694,398	-		MIT1002_02412	0.30	-0.6
2,694,473	-		MIT1002_02412	0.36	+0.1
2,694,598	-		MIT1002_02412	0.46	+0.1
2,694,690	-		MIT1002_02412	0.54	+1.0
2,694,760	+		MIT1002_02412	0.59	-0.5
2,694,769	-		MIT1002_02412	0.60	-0.0
2,694,820	+		MIT1002_02412	0.64	-0.6
2,694,820	+		MIT1002_02412	0.64	-1.4
2,694,828	-		MIT1002_02412	0.65	+1.3
2,694,829	+		MIT1002_02412	0.65	+0.0
2,694,844	+		MIT1002_02412	0.66	+1.7
2,694,845	+		MIT1002_02412	0.66	+0.1
2,694,863	-		MIT1002_02412	0.68	+0.9
2,694,866	-		MIT1002_02412	0.68	+0.2
2,694,964	+		MIT1002_02412	0.76	+0.9
2,694,973	-		MIT1002_02412	0.76	+0.5
2,694,973	-		MIT1002_02412	0.76	-2.3
2,695,019	-		MIT1002_02412	0.80	-0.1
2,695,106	+		MIT1002_02412	0.87	+0.3
2,695,107	-		MIT1002_02412	0.87	-0.9
2,695,107	-		MIT1002_02412	0.87	+0.3
2,695,197	-				+0.5
2,695,261	-				-1.3
2,695,346	+				+0.2
2,695,351	+				-0.9
2,695,351	+				+0.4
2,695,364	-		MIT1002_02413	0.10	-2.5
2,695,364	-		MIT1002_02413	0.10	+1.3
2,695,439	-		MIT1002_02413	0.19	+1.3
2,695,497	-		MIT1002_02413	0.27	-0.4
2,695,611	-		MIT1002_02413	0.41	+1.0
2,695,611	-		MIT1002_02413	0.41	+0.7
2,695,626	+		MIT1002_02413	0.43	-0.1
2,695,626	+		MIT1002_02413	0.43	+0.5
2,695,626	+		MIT1002_02413	0.43	+0.1
2,695,626	+		MIT1002_02413	0.43	+0.4
2,695,634	-		MIT1002_02413	0.44	+0.1
2,695,634	-		MIT1002_02413	0.44	-1.6
2,695,712	-		MIT1002_02413	0.53	+1.4
2,695,719	+		MIT1002_02413	0.54	-1.8
2,695,719	+		MIT1002_02413	0.54	+0.6
2,695,790	+		MIT1002_02413	0.63	+3.1
2,695,790	+		MIT1002_02413	0.63	+0.9
2,695,790	+		MIT1002_02413	0.63	+0.0
2,695,790	+		MIT1002_02413	0.63	-0.7
2,695,790	+		MIT1002_02413	0.63	-0.7
2,695,806	+		MIT1002_02413	0.65	-0.7
2,695,856	-		MIT1002_02413	0.71	-0.1
2,695,931	-		MIT1002_02413	0.80	+2.7
2,695,964	-		MIT1002_02413	0.85	+0.6