Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02308

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
2,574,071	-		MIT1002_02306	0.76	-3.6
2,574,129	+		MIT1002_02306	0.80	-5.3
2,574,251	+				-3.7
2,574,259	-				-1.4
2,574,259	-				-1.2
2,574,259	-				-4.3
2,574,315	-				-4.9
2,574,317	-				-2.5
2,574,319	+				-0.6
2,574,319	+				-5.4
2,574,350	+				+0.4
2,574,350	+				-0.6
2,574,371	-				+1.1
2,574,406	-				-0.3
2,574,474	+		MIT1002_02307	0.17	-2.1
2,574,474	-		MIT1002_02307	0.17	+0.6
2,574,537	+		MIT1002_02307	0.28	+0.0
2,574,590	-		MIT1002_02307	0.36	+1.4
2,574,602	+		MIT1002_02307	0.39	-1.6
2,574,604	+		MIT1002_02307	0.39	+1.0
2,574,612	-		MIT1002_02307	0.40	-0.4
2,574,625	+		MIT1002_02307	0.42	+0.0
2,574,633	-		MIT1002_02307	0.44	-0.6
2,574,676	+		MIT1002_02307	0.51	-2.7
2,574,787	+		MIT1002_02307	0.69	+0.2
2,574,845	-		MIT1002_02307	0.79	-0.0
2,574,878	-		MIT1002_02307	0.84	+0.9
2,575,003	-				+0.0
2,575,026	+				+1.2
2,575,026	+				+2.1
2,575,028	+				+1.5
2,575,034	-				-1.2
2,575,086	+				-0.1
2,575,087	+				-1.8
2,575,095	-				+1.1
2,575,160	-				+1.0
2,575,162	+				+0.8
2,575,162	+				+2.0
2,575,170	-				+2.2
2,575,204	+		MIT1002_02308	0.12	+0.2
2,575,204	+		MIT1002_02308	0.12	+0.6
2,575,204	+		MIT1002_02308	0.12	-0.5
2,575,204	+		MIT1002_02308	0.12	+1.1
2,575,204	+		MIT1002_02308	0.12	-0.6
2,575,212	-		MIT1002_02308	0.12	+1.0
2,575,212	-		MIT1002_02308	0.12	-0.7
2,575,212	-		MIT1002_02308	0.12	+0.1
2,575,212	-		MIT1002_02308	0.12	-1.6
2,575,212	-		MIT1002_02308	0.12	+0.3
2,575,241	-		MIT1002_02308	0.14	-1.2
2,575,246	+		MIT1002_02308	0.15	+2.2
2,575,271	+		MIT1002_02308	0.17	-2.6
2,575,289	-		MIT1002_02308	0.18	+1.9
2,575,430	-		MIT1002_02308	0.28	+0.7
2,575,464	-		MIT1002_02308	0.31	-0.4
2,575,475	+		MIT1002_02308	0.32	-1.4
2,575,481	+		MIT1002_02308	0.32	+0.5
2,575,481	+		MIT1002_02308	0.32	+1.5
2,575,481	+		MIT1002_02308	0.32	+0.0
2,575,482	-		MIT1002_02308	0.32	-0.9
2,575,489	-		MIT1002_02308	0.33	+2.3
2,575,516	+		MIT1002_02308	0.35	+0.2
2,575,532	-		MIT1002_02308	0.36	-0.3
2,575,532	-		MIT1002_02308	0.36	-3.2
2,575,632	-		MIT1002_02308	0.44	-0.9
2,575,711	+		MIT1002_02308	0.49	+0.5
2,575,755	-		MIT1002_02308	0.53	+1.2
2,575,819	+		MIT1002_02308	0.57	+1.8
2,575,827	-		MIT1002_02308	0.58	+0.0
2,575,872	+		MIT1002_02308	0.61	-0.7
2,575,921	+		MIT1002_02308	0.65	-2.4
2,575,921	+		MIT1002_02308	0.65	+1.8
2,575,929	-		MIT1002_02308	0.66	+1.7
2,575,929	-		MIT1002_02308	0.66	+0.3
2,575,946	+		MIT1002_02308	0.67	+0.8
2,575,954	-		MIT1002_02308	0.67	+0.7
2,576,035	-		MIT1002_02308	0.74	+1.5
2,576,091	+		MIT1002_02308	0.78	+0.2
2,576,092	+		MIT1002_02308	0.78	-0.2
2,576,092	+		MIT1002_02308	0.78	-0.1
2,576,100	-		MIT1002_02308	0.78	-3.0
2,576,100	-		MIT1002_02308	0.78	-1.7
2,576,127	+		MIT1002_02308	0.80	+0.2
2,576,137	+		MIT1002_02308	0.81	-0.7
2,576,216	-		MIT1002_02308	0.87	-0.4
2,576,293	+				-1.2
2,576,336	-				-1.4
2,576,338	+				-0.4
2,576,367	+				-0.5
2,576,367	+				+2.1
2,576,375	-				+0.1
2,576,375	-				+0.1
2,576,634	-				-1.2
2,576,639	-				-0.6
2,576,641	+				+1.7
2,576,660	-		MIT1002_02309	0.12	-1.0
2,576,660	-		MIT1002_02309	0.12	-1.4
2,576,660	-		MIT1002_02309	0.12	+0.8
2,576,718	-		MIT1002_02309	0.17	-0.7
2,576,730	-		MIT1002_02309	0.19	-0.3
2,576,813	-		MIT1002_02309	0.27	+0.4
2,576,813	-		MIT1002_02309	0.27	-1.3
2,576,832	+		MIT1002_02309	0.29	+0.9
2,576,886	+		MIT1002_02309	0.34	+2.2
2,576,894	-		MIT1002_02309	0.35	-0.1
2,576,993	-		MIT1002_02309	0.45	+0.8
2,577,090	+		MIT1002_02309	0.54	+0.0
2,577,094	+		MIT1002_02309	0.55	-3.0
2,577,097	-		MIT1002_02309	0.55	-0.2
2,577,098	-		MIT1002_02309	0.55	+0.8
2,577,185	+		MIT1002_02309	0.64	+1.3
2,577,195	+		MIT1002_02309	0.65	+1.1
2,577,205	+		MIT1002_02309	0.66	-0.3
2,577,247	-		MIT1002_02309	0.70	-0.9
2,577,269	-		MIT1002_02309	0.72	+1.0
2,577,303	-		MIT1002_02309	0.75	+0.1
2,577,376	-		MIT1002_02309	0.83	-0.6