Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02253

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
2,508,655	+				-0.4
2,508,673	-				-1.0
2,508,701	+				+0.2
2,508,708	-				+0.2
2,508,789	+				+0.7
2,508,797	-				-0.2
2,508,820	-				+0.3
2,508,820	-				-0.3
2,508,825	-				+1.0
2,508,843	+				+0.6
2,508,851	-				-1.2
2,508,947	+				+0.2
2,508,947	+				-1.9
2,508,967	-				+0.8
2,508,994	+				+0.1
2,509,028	-				+0.4
2,509,037	+				-0.6
2,509,085	+		MIT1002_02252	0.17	-2.5
2,509,092	-		MIT1002_02252	0.19	+0.4
2,509,122	+		MIT1002_02252	0.25	+1.1
2,509,122	+		MIT1002_02252	0.25	-0.5
2,509,125	-		MIT1002_02252	0.26	-0.7
2,509,147	+		MIT1002_02252	0.31	+0.5
2,509,173	+		MIT1002_02252	0.36	+0.9
2,509,219	+		MIT1002_02252	0.47	-0.7
2,509,219	+		MIT1002_02252	0.47	+0.7
2,509,227	-		MIT1002_02252	0.48	-0.6
2,509,227	-		MIT1002_02252	0.48	+1.3
2,509,227	-		MIT1002_02252	0.48	+2.1
2,509,227	-		MIT1002_02252	0.48	+0.3
2,509,227	-		MIT1002_02252	0.48	+0.2
2,509,227	-		MIT1002_02252	0.48	-1.6
2,509,227	-		MIT1002_02252	0.48	-2.3
2,509,227	-		MIT1002_02252	0.48	+0.9
2,509,227	-		MIT1002_02252	0.48	-0.2
2,509,319	+		MIT1002_02252	0.69	+0.4
2,509,344	+		MIT1002_02252	0.74	-0.4
2,509,352	-		MIT1002_02252	0.76	-0.2
2,509,353	-		MIT1002_02252	0.76	-2.2
2,509,478	-				+1.6
2,509,482	+				-0.5
2,509,490	-				-0.0
2,509,492	-				+0.5
2,509,560	+				+0.7
2,509,567	+				-0.5
2,509,577	-				-2.0
2,509,581	+				+0.0
2,509,581	+				-0.6
2,509,591	+				-1.7
2,509,591	+				-0.4
2,509,592	-				+0.5
2,509,599	-				-0.3
2,509,599	-				+0.8
2,509,678	-		MIT1002_02253	0.20	+0.5
2,509,679	+		MIT1002_02253	0.21	-0.7
2,509,688	-		MIT1002_02253	0.24	+0.3
2,509,703	-		MIT1002_02253	0.30	+1.2
2,509,710	-		MIT1002_02253	0.32	-2.3
2,509,710	-		MIT1002_02253	0.32	+0.6
2,509,721	+		MIT1002_02253	0.36	-0.0
2,509,721	+		MIT1002_02253	0.36	-0.5
2,509,729	-		MIT1002_02253	0.39	+0.2
2,509,761	+		MIT1002_02253	0.51	+0.8
2,509,762	+		MIT1002_02253	0.51	+0.1
2,509,768	+		MIT1002_02253	0.54	+0.7
2,509,769	-		MIT1002_02253	0.54	+1.0
2,509,769	-		MIT1002_02253	0.54	+2.3
2,509,769	-		MIT1002_02253	0.54	-0.3
2,509,770	-		MIT1002_02253	0.54	+2.4
2,509,776	-		MIT1002_02253	0.57	-0.6
2,509,776	-		MIT1002_02253	0.57	+1.4
2,509,776	-		MIT1002_02253	0.57	+0.5
2,509,784	-		MIT1002_02253	0.60	-0.2
2,509,789	-		MIT1002_02253	0.61	+0.3
2,509,793	+		MIT1002_02253	0.63	+1.0
2,509,801	-		MIT1002_02253	0.66	-0.2
2,509,801	-		MIT1002_02253	0.66	-0.6
2,509,801	-		MIT1002_02253	0.66	-0.4
2,509,801	-		MIT1002_02253	0.66	+0.9
2,509,801	-		MIT1002_02253	0.66	+0.4
2,509,805	+		MIT1002_02253	0.67	+1.2
2,509,813	-		MIT1002_02253	0.70	+0.5
2,509,865	-		MIT1002_02253	0.90	-1.8
2,509,886	+				+0.9
2,509,886	+				+1.1
2,509,886	+				+1.2
2,509,901	-				-3.2
2,509,917	-				-1.6
2,509,922	+				+1.7
2,509,930	-				+0.5
2,509,932	+				-1.6
2,509,937	+				+1.2
2,510,009	+				+1.3
2,510,009	+				+1.3
2,510,017	-		MIT1002_02254	0.12	+0.6
2,510,023	+		MIT1002_02254	0.15	+0.9
2,510,029	+		MIT1002_02254	0.18	-0.1
2,510,036	-		MIT1002_02254	0.21	-0.2
2,510,055	+		MIT1002_02254	0.29	-0.0
2,510,057	+		MIT1002_02254	0.29	-0.3
2,510,057	+		MIT1002_02254	0.29	-0.9
2,510,057	+		MIT1002_02254	0.29	+0.3
2,510,063	-		MIT1002_02254	0.32	-0.4
2,510,065	+		MIT1002_02254	0.33	+0.3
2,510,065	-		MIT1002_02254	0.33	-0.7
2,510,065	-		MIT1002_02254	0.33	+0.4
2,510,065	-		MIT1002_02254	0.33	-0.9
2,510,065	-		MIT1002_02254	0.33	+0.8
2,510,072	-		MIT1002_02254	0.36	+0.6
2,510,077	+		MIT1002_02254	0.38	-1.2
2,510,077	+		MIT1002_02254	0.38	+0.3
2,510,077	+		MIT1002_02254	0.38	+0.1
2,510,077	+		MIT1002_02254	0.38	-2.4
2,510,077	+		MIT1002_02254	0.38	+1.4
2,510,079	+		MIT1002_02254	0.39	-2.0
2,510,081	+		MIT1002_02254	0.40	-0.2
2,510,085	-		MIT1002_02254	0.41	-0.4
2,510,085	-		MIT1002_02254	0.41	+0.4
2,510,085	-		MIT1002_02254	0.41	-0.1
2,510,085	-		MIT1002_02254	0.41	-0.9
2,510,091	+		MIT1002_02254	0.44	+0.7
2,510,091	+		MIT1002_02254	0.44	-0.2
2,510,096	-		MIT1002_02254	0.46	+0.3
2,510,096	-		MIT1002_02254	0.46	+0.1
2,510,108	+		MIT1002_02254	0.51	-0.3
2,510,109	+		MIT1002_02254	0.52	-0.3
2,510,111	-		MIT1002_02254	0.53	-2.6
2,510,115	-		MIT1002_02254	0.54	-0.0
2,510,239	+				+0.7
2,510,239	+				-0.1
2,510,260	-				+1.1
2,510,260	-				+0.1
2,510,299	-				-3.6
2,510,342	+				-1.7
2,510,348	+				+1.4
2,510,348	+				-0.3
2,510,348	+				-0.6
2,510,348	+				-1.4
2,510,350	+				-0.3
2,510,350	-				-1.7
2,510,356	-				-0.4
2,510,356	-				-1.1
2,510,356	-				-1.9
2,510,357	-				-0.4
2,510,393	+		MIT1002_02255	0.13	-0.2
2,510,395	+		MIT1002_02255	0.13	-0.8
2,510,395	+		MIT1002_02255	0.13	-0.9
2,510,395	+		MIT1002_02255	0.13	-1.9
2,510,395	+		MIT1002_02255	0.13	-1.7
2,510,395	+		MIT1002_02255	0.13	+0.4
2,510,403	+		MIT1002_02255	0.14	-0.8
2,510,403	-		MIT1002_02255	0.14	-0.1
2,510,403	-		MIT1002_02255	0.14	-0.6
2,510,403	-		MIT1002_02255	0.14	+1.3
2,510,417	-		MIT1002_02255	0.15	+1.4
2,510,549	+		MIT1002_02255	0.31	+0.1
2,510,551	-		MIT1002_02255	0.31	+0.6
2,510,562	-		MIT1002_02255	0.32	+0.7
2,510,588	+		MIT1002_02255	0.35	+0.2
2,510,623	+		MIT1002_02255	0.40	-0.9
2,510,631	+		MIT1002_02255	0.40	+0.0
2,510,631	-		MIT1002_02255	0.40	-0.6
2,510,655	-		MIT1002_02255	0.43	+0.3
2,510,655	-		MIT1002_02255	0.43	-0.1
2,510,687	-		MIT1002_02255	0.47	-0.3
2,510,724	+		MIT1002_02255	0.51	-1.8
2,510,792	+		MIT1002_02255	0.59	-0.1
2,510,792	+		MIT1002_02255	0.59	+0.7
2,510,800	-		MIT1002_02255	0.60	-0.8
2,510,806	-		MIT1002_02255	0.61	+0.4
2,510,814	+		MIT1002_02255	0.62	-1.5
2,510,835	-		MIT1002_02255	0.64	+0.2
2,510,849	-		MIT1002_02255	0.66	-2.2