Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02184

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
2,439,195	+		MIT1002_02183	0.23	+0.3
2,439,204	+		MIT1002_02183	0.24	+0.1
2,439,204	+		MIT1002_02183	0.24	-3.3
2,439,204	+		MIT1002_02183	0.24	+0.7
2,439,211	-		MIT1002_02183	0.24	+2.5
2,439,212	-		MIT1002_02183	0.25	-0.0
2,439,212	-		MIT1002_02183	0.25	-0.1
2,439,212	-		MIT1002_02183	0.25	+0.1
2,439,212	-		MIT1002_02183	0.25	+0.7
2,439,212	-		MIT1002_02183	0.25	-0.6
2,439,239	-		MIT1002_02183	0.27	-0.4
2,439,272	-		MIT1002_02183	0.30	+1.0
2,439,357	+		MIT1002_02183	0.37	+0.4
2,439,385	-		MIT1002_02183	0.40	-1.7
2,439,435	-		MIT1002_02183	0.44	+0.7
2,439,465	+		MIT1002_02183	0.47	+0.2
2,439,606	+		MIT1002_02183	0.59	+0.4
2,439,619	-		MIT1002_02183	0.60	-0.1
2,439,648	+		MIT1002_02183	0.63	-0.7
2,439,656	-		MIT1002_02183	0.64	-0.2
2,439,686	-		MIT1002_02183	0.66	+1.1
2,439,703	-		MIT1002_02183	0.68	+0.1
2,439,763	+		MIT1002_02183	0.73	+1.1
2,439,780	+		MIT1002_02183	0.75	+1.7
2,439,783	-		MIT1002_02183	0.75	-0.6
2,439,788	-		MIT1002_02183	0.75	-0.4
2,439,788	-		MIT1002_02183	0.75	+0.6
2,439,788	-		MIT1002_02183	0.75	-0.4
2,439,818	+		MIT1002_02183	0.78	-1.1
2,439,958	+				-0.9
2,439,958	+				-1.2
2,439,989	-				-1.1
2,439,994	-				+0.6
2,439,994	-				-2.4
2,439,996	+				+1.7
2,440,038	-				-0.8
2,440,039	-				-0.3
2,440,059	+				+0.0
2,440,151	-				-1.6
2,440,181	+				-0.5
2,440,228	+				-1.2
2,440,228	-				-4.1
2,440,423	+		MIT1002_02184	0.34	-3.1
2,440,423	+		MIT1002_02184	0.34	-2.7
2,440,476	+		MIT1002_02184	0.42	-2.2
2,440,790	-		MIT1002_02184	0.87	-2.0
2,440,849	+				-0.9
2,440,880	-				-1.9