Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01977

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
2,209,449	+				-3.8
2,209,473	-				+0.6
2,209,506	-		MIT1002_01976	0.11	-0.2
2,209,522	+		MIT1002_01976	0.13	+2.2
2,209,535	-		MIT1002_01976	0.14	+0.8
2,209,541	+		MIT1002_01976	0.15	+2.4
2,209,542	+		MIT1002_01976	0.15	-0.1
2,209,563	+		MIT1002_01976	0.18	-0.5
2,209,564	-		MIT1002_01976	0.18	+1.0
2,209,602	-		MIT1002_01976	0.22	-1.8
2,209,612	+		MIT1002_01976	0.23	-0.0
2,209,620	-		MIT1002_01976	0.24	-0.4
2,209,624	+		MIT1002_01976	0.25	+1.3
2,209,634	-		MIT1002_01976	0.26	+0.5
2,209,662	+		MIT1002_01976	0.29	-2.7
2,209,665	-		MIT1002_01976	0.29	+0.2
2,209,670	-		MIT1002_01976	0.30	+1.1
2,209,792	+		MIT1002_01976	0.44	-1.0
2,209,797	+		MIT1002_01976	0.44	-0.3
2,209,831	-		MIT1002_01976	0.48	-1.1
2,209,903	-		MIT1002_01976	0.57	+1.0
2,209,911	+		MIT1002_01976	0.57	-0.5
2,209,966	+		MIT1002_01976	0.64	+0.7
2,209,966	+		MIT1002_01976	0.64	+1.0
2,209,966	+		MIT1002_01976	0.64	-2.0
2,209,966	+		MIT1002_01976	0.64	-0.6
2,209,966	+		MIT1002_01976	0.64	+0.4
2,209,966	+		MIT1002_01976	0.64	+1.5
2,209,966	+		MIT1002_01976	0.64	-1.5
2,209,966	+		MIT1002_01976	0.64	+1.1
2,209,974	-		MIT1002_01976	0.65	+1.9
2,209,974	-		MIT1002_01976	0.65	+0.2
2,209,974	-		MIT1002_01976	0.65	+0.2
2,209,974	-		MIT1002_01976	0.65	+1.2
2,209,974	-		MIT1002_01976	0.65	-0.5
2,209,974	-		MIT1002_01976	0.65	-0.0
2,209,974	-		MIT1002_01976	0.65	+1.0
2,209,974	-		MIT1002_01976	0.65	+0.3
2,210,061	-		MIT1002_01976	0.75	-1.1
2,210,140	+		MIT1002_01976	0.84	+0.2
2,210,140	+		MIT1002_01976	0.84	+0.4
2,210,148	-		MIT1002_01976	0.84	-2.8
2,210,148	-		MIT1002_01976	0.84	-3.4
2,210,182	+		MIT1002_01976	0.88	+0.1
2,210,454	+				+1.5
2,210,464	+				+1.2
2,210,565	+				+0.5
2,210,565	+				-1.2
2,210,573	-				+0.3
2,210,581	+				-0.0
2,210,583	-		MIT1002_01977	0.10	-0.4
2,210,589	-		MIT1002_01977	0.10	-0.2
2,210,600	+		MIT1002_01977	0.11	-0.1
2,210,754	+		MIT1002_01977	0.21	+1.3
2,210,831	-		MIT1002_01977	0.26	-0.7
2,210,943	+		MIT1002_01977	0.33	+1.7
2,210,953	+		MIT1002_01977	0.34	+0.3
2,211,002	-		MIT1002_01977	0.37	+0.5
2,211,005	+		MIT1002_01977	0.38	-0.0
2,211,010	+		MIT1002_01977	0.38	-1.2
2,211,127	+		MIT1002_01977	0.45	-0.1
2,211,127	+		MIT1002_01977	0.45	-0.8
2,211,157	-		MIT1002_01977	0.47	-1.7
2,211,157	-		MIT1002_01977	0.47	+0.6
2,211,203	-		MIT1002_01977	0.50	+0.7
2,211,365	-		MIT1002_01977	0.61	+0.7
2,211,387	-		MIT1002_01977	0.62	+1.6
2,211,408	-		MIT1002_01977	0.64	-0.5
2,211,461	+		MIT1002_01977	0.67	-0.4
2,211,469	-		MIT1002_01977	0.68	-0.3
2,211,469	-		MIT1002_01977	0.68	-0.3
2,211,817	+				-0.3
2,211,859	-				-2.5
2,211,883	+				+0.5
2,211,891	-				+2.4
2,211,936	-				+1.9
2,211,962	+				+2.0
2,211,970	-				-0.4
2,212,001	+				-1.0
2,212,044	+				+1.8
2,212,057	-				+0.3
2,212,129	-				-1.0
2,212,227	-				-1.9
2,212,233	-				-0.7
2,212,359	+				+0.4
2,212,374	+				-1.3
2,212,420	+		MIT1002_01978	0.13	+0.1
2,212,452	+		MIT1002_01978	0.16	-0.6
2,212,504	-		MIT1002_01978	0.20	-0.2
2,212,519	-		MIT1002_01978	0.21	-1.5
2,212,534	+		MIT1002_01978	0.23	-0.3
2,212,584	-		MIT1002_01978	0.27	-3.1
2,212,605	-		MIT1002_01978	0.29	+1.0
2,212,689	-		MIT1002_01978	0.36	+2.2
2,212,721	-		MIT1002_01978	0.39	-0.1
2,212,723	+		MIT1002_01978	0.39	-2.2
2,212,723	+		MIT1002_01978	0.39	-2.9
2,212,723	+		MIT1002_01978	0.39	-2.1
2,212,723	+		MIT1002_01978	0.39	+0.1
2,212,723	+		MIT1002_01978	0.39	-0.3
2,212,723	+		MIT1002_01978	0.39	+0.5
2,212,723	+		MIT1002_01978	0.39	+0.3
2,212,723	+		MIT1002_01978	0.39	-2.5
2,212,723	+		MIT1002_01978	0.39	+1.1
2,212,731	-		MIT1002_01978	0.40	+1.2
2,212,731	-		MIT1002_01978	0.40	-1.6
2,212,731	-		MIT1002_01978	0.40	-1.6
2,212,731	-		MIT1002_01978	0.40	+0.7
2,212,731	-		MIT1002_01978	0.40	-1.6
2,212,731	-		MIT1002_01978	0.40	+1.5
2,212,741	-		MIT1002_01978	0.41	-0.1
2,212,785	+		MIT1002_01978	0.44	-0.4
2,212,793	-		MIT1002_01978	0.45	-0.7
2,212,821	+		MIT1002_01978	0.48	+1.0
2,212,840	+		MIT1002_01978	0.49	-2.0
2,212,842	+		MIT1002_01978	0.49	+0.7
2,212,876	+		MIT1002_01978	0.52	+0.2
2,212,899	-		MIT1002_01978	0.54	-4.2
2,212,903	+		MIT1002_01978	0.55	-0.7
2,212,950	+		MIT1002_01978	0.59	-0.3
2,212,958	-		MIT1002_01978	0.59	-0.7