Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01968

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
2,200,751	-				-4.4
2,200,768	-				-1.0
2,200,966	+				+1.2
2,200,967	-				-0.2
2,201,014	-				+1.2
2,201,031	-				+1.0
2,201,039	+				-0.7
2,201,148	+		MIT1002_01968	0.12	+1.4
2,201,156	-		MIT1002_01968	0.13	+0.6
2,201,188	+		MIT1002_01968	0.14	+0.7
2,201,212	-		MIT1002_01968	0.15	+1.1
2,201,244	+		MIT1002_01968	0.16	-3.2
2,201,263	+		MIT1002_01968	0.17	+1.1
2,201,310	+		MIT1002_01968	0.19	-0.9
2,201,310	+		MIT1002_01968	0.19	-0.3
2,201,310	+		MIT1002_01968	0.19	-1.1
2,201,318	-		MIT1002_01968	0.19	+1.6
2,201,318	-		MIT1002_01968	0.19	+0.9
2,201,373	-		MIT1002_01968	0.21	+0.5
2,201,373	-		MIT1002_01968	0.21	-2.7
2,201,373	-		MIT1002_01968	0.21	+0.0
2,201,373	-		MIT1002_01968	0.21	+0.6
2,201,375	+		MIT1002_01968	0.21	+1.3
2,201,408	+		MIT1002_01968	0.23	+0.6
2,201,442	+		MIT1002_01968	0.24	+0.2
2,201,478	+		MIT1002_01968	0.26	+0.5
2,201,478	-		MIT1002_01968	0.26	-2.0
2,201,481	-		MIT1002_01968	0.26	+2.8
2,201,497	+		MIT1002_01968	0.26	+0.3
2,201,534	-		MIT1002_01968	0.28	-0.9
2,201,575	-		MIT1002_01968	0.29	-1.0
2,201,575	-		MIT1002_01968	0.29	+1.0
2,201,612	-		MIT1002_01968	0.31	-1.1
2,201,625	-		MIT1002_01968	0.31	-1.2
2,201,625	-		MIT1002_01968	0.31	+0.7
2,201,650	+		MIT1002_01968	0.32	-1.0
2,201,658	-		MIT1002_01968	0.33	+1.4
2,201,658	-		MIT1002_01968	0.33	-1.8
2,201,664	-		MIT1002_01968	0.33	-1.1
2,201,785	-		MIT1002_01968	0.38	+1.3
2,201,805	+		MIT1002_01968	0.38	-0.2
2,201,813	+		MIT1002_01968	0.39	-0.4
2,201,813	-		MIT1002_01968	0.39	-1.4
2,201,821	-		MIT1002_01968	0.39	-1.0
2,201,832	-		MIT1002_01968	0.40	+1.1
2,201,926	+		MIT1002_01968	0.43	-0.9
2,201,960	+		MIT1002_01968	0.45	+2.4
2,201,968	-		MIT1002_01968	0.45	+1.5
2,202,016	+		MIT1002_01968	0.47	-2.8
2,202,016	+		MIT1002_01968	0.47	+1.4
2,202,046	-		MIT1002_01968	0.48	-2.0
2,202,093	+		MIT1002_01968	0.50	+1.2
2,202,111	-		MIT1002_01968	0.51	+1.8
2,202,196	-		MIT1002_01968	0.54	-0.6
2,202,205	+		MIT1002_01968	0.54	-0.5
2,202,210	-		MIT1002_01968	0.55	+2.0
2,202,266	+		MIT1002_01968	0.57	-0.7
2,202,321	+		MIT1002_01968	0.59	-3.3
2,202,329	-		MIT1002_01968	0.59	+0.2
2,202,355	+		MIT1002_01968	0.60	-0.8
2,202,487	-		MIT1002_01968	0.66	+1.3
2,202,505	-		MIT1002_01968	0.66	+0.3
2,202,548	+		MIT1002_01968	0.68	+0.6
2,202,565	+		MIT1002_01968	0.69	+0.1
2,202,573	-		MIT1002_01968	0.69	-0.4
2,202,596	+		MIT1002_01968	0.70	+1.8
2,202,677	+		MIT1002_01968	0.73	+1.3
2,202,684	-		MIT1002_01968	0.73	+0.9
2,202,688	+		MIT1002_01968	0.73	-2.6
2,202,693	+		MIT1002_01968	0.74	-1.8
2,202,696	-		MIT1002_01968	0.74	+1.1
2,202,698	+		MIT1002_01968	0.74	-1.5
2,202,701	-		MIT1002_01968	0.74	+1.6
2,202,701	-		MIT1002_01968	0.74	-0.5
2,202,725	+		MIT1002_01968	0.75	+0.4
2,202,755	+		MIT1002_01968	0.76	+1.0
2,202,873	-		MIT1002_01968	0.81	+1.1
2,202,936	-		MIT1002_01968	0.83	+1.1
2,203,001	+		MIT1002_01968	0.86	-0.2
2,203,030	-		MIT1002_01968	0.87	+1.4
2,203,110	-				-0.8
2,203,120	+				+0.2
2,203,183	+				+0.2
2,203,209	-				+0.8
2,203,209	-				+0.1
2,203,219	-				-2.8
2,203,268	-				+0.3
2,203,273	-				+0.3
2,203,283	-				-0.6
2,203,311	+				-1.2
2,203,328	-				-1.5
2,203,405	-				-0.3
2,203,782	-		MIT1002_01969	0.29	-0.5
2,203,796	+		MIT1002_01969	0.31	-0.9
2,203,850	-		MIT1002_01969	0.36	-2.3
2,203,884	+		MIT1002_01969	0.39	-0.8
2,203,895	+		MIT1002_01969	0.40	-3.0
2,203,912	+		MIT1002_01969	0.42	+0.1
2,203,914	+		MIT1002_01969	0.42	+1.3
2,203,924	+		MIT1002_01969	0.43	+0.5
2,203,924	+		MIT1002_01969	0.43	+0.9
2,203,924	+		MIT1002_01969	0.43	+0.3
2,204,091	+		MIT1002_01969	0.59	+0.7
2,204,147	-		MIT1002_01969	0.64	+2.1
2,204,189	+		MIT1002_01969	0.68	+0.1
2,204,196	+		MIT1002_01969	0.69	+1.6
2,204,204	-		MIT1002_01969	0.70	+0.6
2,204,234	+		MIT1002_01969	0.72	+0.3
2,204,242	-		MIT1002_01969	0.73	+0.9
2,204,280	-		MIT1002_01969	0.77	-2.8
2,204,309	+		MIT1002_01969	0.80	-0.1