Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01904

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
2,115,096	+		MIT1002_01902	0.62	+0.3
2,115,096	+		MIT1002_01902	0.62	+2.1
2,115,096	+		MIT1002_01902	0.62	+1.5
2,115,097	-		MIT1002_01902	0.62	-0.6
2,115,104	-		MIT1002_01902	0.63	-0.1
2,115,104	-		MIT1002_01902	0.63	+0.4
2,115,104	-		MIT1002_01902	0.63	-1.6
2,115,175	-		MIT1002_01902	0.79	-0.5
2,115,194	+		MIT1002_01902	0.83	-0.2
2,115,202	-		MIT1002_01902	0.84	+0.5
2,115,204	+		MIT1002_01902	0.85	+0.8
2,115,204	+		MIT1002_01902	0.85	-0.3
2,115,238	+				+0.7
2,115,413	+				+0.5
2,115,479	-				+0.7
2,115,493	+				-1.7
2,115,661	-		MIT1002_01903	0.27	+0.2
2,115,710	+		MIT1002_01903	0.38	+0.4
2,115,712	-		MIT1002_01903	0.38	-1.3
2,115,715	+		MIT1002_01903	0.39	+1.0
2,115,716	+		MIT1002_01903	0.39	+0.3
2,115,836	-		MIT1002_01903	0.65	+0.8
2,115,890	-		MIT1002_01903	0.77	+0.1
2,115,979	-				+1.4
2,116,008	+				-1.1
2,116,075	+				+2.5
2,116,083	-				-1.8
2,116,143	+				+0.7
2,116,143	+				-1.8
2,116,151	-				-2.9
2,116,151	-				+1.6
2,116,212	-		MIT1002_01904	0.11	+1.2
2,116,212	-		MIT1002_01904	0.11	+0.4
2,116,256	-		MIT1002_01904	0.16	+0.5
2,116,381	+		MIT1002_01904	0.28	+0.1
2,116,381	+		MIT1002_01904	0.28	-0.7
2,116,381	+		MIT1002_01904	0.28	-1.1
2,116,381	+		MIT1002_01904	0.28	+0.5
2,116,381	+		MIT1002_01904	0.28	+0.1
2,116,381	+		MIT1002_01904	0.28	-0.7
2,116,381	+		MIT1002_01904	0.28	+0.4
2,116,381	+		MIT1002_01904	0.28	-0.1
2,116,389	-		MIT1002_01904	0.29	-0.1
2,116,389	-		MIT1002_01904	0.29	-0.6
2,116,389	-		MIT1002_01904	0.29	-0.3
2,116,389	-		MIT1002_01904	0.29	-0.7
2,116,389	-		MIT1002_01904	0.29	+0.0
2,116,391	+		MIT1002_01904	0.29	+0.2
2,116,391	+		MIT1002_01904	0.29	+0.4
2,116,421	-		MIT1002_01904	0.32	-0.8
2,116,466	+		MIT1002_01904	0.36	-0.5
2,116,519	+		MIT1002_01904	0.41	-0.0
2,116,519	+		MIT1002_01904	0.41	-0.2
2,116,756	-		MIT1002_01904	0.64	+1.0
2,116,838	-		MIT1002_01904	0.72	-1.5
2,116,838	-		MIT1002_01904	0.72	-0.6
2,116,838	-		MIT1002_01904	0.72	+0.5
2,116,871	+		MIT1002_01904	0.75	-3.1
2,116,934	-		MIT1002_01904	0.81	+0.4
2,116,938	+		MIT1002_01904	0.82	-0.9
2,117,003	+		MIT1002_01904	0.88	+0.3
2,117,042	+				+0.4
2,117,052	-				+0.1
2,117,065	-				+0.6
2,117,066	-				-1.4
2,117,125	-				-0.2
2,117,133	+				-0.8
2,117,134	-				+0.8
2,117,138	+				-0.0
2,117,138	+				+0.3
2,117,140	-				+1.2
2,117,146	+				+1.5
2,117,162	-				+1.1
2,117,277	-				+1.5
2,117,323	-				+0.9
2,117,341	+		MIT1002_01905	0.12	+1.0
2,117,419	+		MIT1002_01905	0.37	-0.6
2,117,419	+		MIT1002_01905	0.37	-0.0
2,117,427	-		MIT1002_01905	0.39	+0.8
2,117,427	-		MIT1002_01905	0.39	-0.2
2,117,434	-		MIT1002_01905	0.42	-2.4
2,117,506	-		MIT1002_01905	0.64	-0.1
2,117,506	-		MIT1002_01905	0.64	+1.6
2,117,564	+		MIT1002_01905	0.82	+0.3
2,117,564	+		MIT1002_01905	0.82	+1.0
2,117,564	+		MIT1002_01905	0.82	-3.5
2,117,564	+		MIT1002_01905	0.82	-0.8
2,117,564	+		MIT1002_01905	0.82	+0.6
2,117,564	+		MIT1002_01905	0.82	+0.3
2,117,564	+		MIT1002_01905	0.82	+0.2
2,117,572	-		MIT1002_01905	0.85	+0.8
2,117,572	-		MIT1002_01905	0.85	+1.1
2,117,572	-		MIT1002_01905	0.85	-0.8
2,117,572	-		MIT1002_01905	0.85	-1.1
2,117,572	-		MIT1002_01905	0.85	+1.5
2,117,572	-		MIT1002_01905	0.85	+0.0
2,117,572	-		MIT1002_01905	0.85	-1.5
2,117,572	-		MIT1002_01905	0.85	+2.4
2,117,572	-		MIT1002_01905	0.85	+0.3
2,117,572	-		MIT1002_01905	0.85	+1.5
2,117,572	-		MIT1002_01905	0.85	+0.1
2,117,572	-		MIT1002_01905	0.85	+0.8
2,117,572	-		MIT1002_01905	0.85	+0.6
2,117,580	+		MIT1002_01905	0.87	-0.3
2,117,580	+		MIT1002_01905	0.87	+0.7
2,117,580	+		MIT1002_01905	0.87	-0.0
2,117,588	-				-1.8
2,117,588	-				-2.0
2,117,597	+				+0.1
2,117,598	-				-0.0
2,117,619	+				+0.2
2,117,706	-				+0.8
2,117,721	+				+1.9
2,117,754	+				-0.2
2,117,824	+		MIT1002_01906	0.28	+0.7
2,117,824	+		MIT1002_01906	0.28	-0.2
2,117,832	-		MIT1002_01906	0.30	-0.8
2,117,832	-		MIT1002_01906	0.30	+0.5
2,117,832	-		MIT1002_01906	0.30	+1.4
2,117,852	+		MIT1002_01906	0.38	+1.4
2,117,877	+		MIT1002_01906	0.46	+0.1
2,117,885	-		MIT1002_01906	0.49	-1.4
2,117,917	+		MIT1002_01906	0.61	-1.2
2,117,931	-		MIT1002_01906	0.66	+0.8
2,118,011	+				-0.6
2,118,012	+				+0.2
2,118,104	+				-0.5
2,118,104	+				+0.1
2,118,112	-				-2.8
2,118,112	-				+1.0