Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01899

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
2,111,435	-		MIT1002_01897	0.84	+0.7
2,111,435	-		MIT1002_01897	0.84	-0.1
2,111,436	-		MIT1002_01897	0.84	-0.1
2,111,450	-		MIT1002_01897	0.87	+0.8
2,111,456	+		MIT1002_01897	0.88	+1.1
2,111,466	+				+0.2
2,111,484	-				+0.6
2,111,574	+				-0.2
2,111,580	+				-0.3
2,111,582	-				+0.8
2,111,582	-				+0.9
2,111,593	+				+0.1
2,111,593	+				+0.1
2,111,598	+				-0.8
2,111,601	-				+0.7
2,111,603	+				-1.6
2,111,603	+				-0.8
2,111,611	-				-1.5
2,111,636	+				-2.6
2,111,671	+				-0.2
2,111,689	-				-1.5
2,111,710	+				+0.3
2,111,749	-				-2.1
2,111,771	+		MIT1002_01898	0.10	+0.7
2,111,809	-		MIT1002_01898	0.18	+0.4
2,111,837	+		MIT1002_01898	0.24	-0.7
2,111,837	+		MIT1002_01898	0.24	-0.4
2,111,845	-		MIT1002_01898	0.26	-0.7
2,111,862	+		MIT1002_01898	0.30	-0.3
2,111,873	+		MIT1002_01898	0.32	+2.7
2,111,912	-		MIT1002_01898	0.40	-2.3
2,111,973	-		MIT1002_01898	0.53	-0.5
2,111,983	+		MIT1002_01898	0.55	+0.8
2,112,000	+		MIT1002_01898	0.59	+0.9
2,112,006	-		MIT1002_01898	0.60	-1.5
2,112,020	-		MIT1002_01898	0.63	+0.2
2,112,028	-		MIT1002_01898	0.65	+1.8
2,112,028	-		MIT1002_01898	0.65	-0.1
2,112,028	-		MIT1002_01898	0.65	-2.1
2,112,037	-		MIT1002_01898	0.67	-0.3
2,112,064	-		MIT1002_01898	0.73	-1.0
2,112,079	+		MIT1002_01898	0.76	-0.2
2,112,087	+		MIT1002_01898	0.77	+1.0
2,112,088	-		MIT1002_01898	0.78	+0.2
2,112,088	-		MIT1002_01898	0.78	-0.9
2,112,089	+		MIT1002_01898	0.78	-4.0
2,112,095	-		MIT1002_01898	0.79	-0.4
2,112,095	-		MIT1002_01898	0.79	+0.4
2,112,095	-		MIT1002_01898	0.79	-0.1
2,112,100	+		MIT1002_01898	0.80	+1.1
2,112,105	+		MIT1002_01898	0.81	+0.1
2,112,105	+		MIT1002_01898	0.81	+0.5
2,112,113	-		MIT1002_01898	0.83	-0.3
2,112,123	-		MIT1002_01898	0.85	-0.3
2,112,146	-				+0.8
2,112,151	+				+0.7
2,112,159	-				+0.3
2,112,201	+				+0.3
2,112,206	-				-1.6
2,112,209	+				+0.6
2,112,209	-				-1.6
2,112,212	-				-1.1
2,112,214	+				+0.8
2,112,217	-				-0.6
2,112,219	+				+1.1
2,112,219	-				+1.5
2,112,219	-				+1.9
2,112,222	-				-2.3
2,112,229	+				+0.5
2,112,234	+				+0.5
2,112,289	-				+0.6
2,112,299	-				+1.0
2,112,326	+				+0.3
2,112,326	+				+1.2
2,112,334	-				+1.0
2,112,334	-				+0.7
2,112,334	-				+1.1
2,112,399	-				+0.1
2,112,418	+				-0.3
2,112,434	-				-0.5
2,112,442	+				+0.0
2,112,444	-				-1.5
2,112,452	+				+1.1
2,112,467	-				-2.9
2,112,467	-				-0.1
2,112,467	-				+0.7
2,112,467	-				-2.1
2,112,468	-				-3.0
2,112,472	-				+0.9
2,112,472	-				+0.8
2,112,473	-				+0.3
2,112,497	-		MIT1002_01899	0.11	+0.1
2,112,510	+		MIT1002_01899	0.14	+0.8
2,112,517	+		MIT1002_01899	0.15	+0.9
2,112,525	-		MIT1002_01899	0.16	-2.4
2,112,527	+		MIT1002_01899	0.16	-1.5
2,112,531	+		MIT1002_01899	0.17	-0.9
2,112,543	-		MIT1002_01899	0.19	-0.2
2,112,545	+		MIT1002_01899	0.20	-1.9
2,112,545	+		MIT1002_01899	0.20	+0.7
2,112,545	+		MIT1002_01899	0.20	+0.4
2,112,545	+		MIT1002_01899	0.20	-0.9
2,112,545	+		MIT1002_01899	0.20	+0.1
2,112,545	+		MIT1002_01899	0.20	-1.1
2,112,546	+		MIT1002_01899	0.20	-2.3
2,112,546	+		MIT1002_01899	0.20	-0.3
2,112,546	+		MIT1002_01899	0.20	+0.2
2,112,547	-		MIT1002_01899	0.20	-0.8
2,112,553	-		MIT1002_01899	0.21	+0.4
2,112,553	-		MIT1002_01899	0.21	-0.2
2,112,553	-		MIT1002_01899	0.21	+1.6
2,112,553	-		MIT1002_01899	0.21	+0.5
2,112,558	+		MIT1002_01899	0.22	+1.0
2,112,562	+		MIT1002_01899	0.23	-1.1
2,112,562	+		MIT1002_01899	0.23	+0.4
2,112,564	+		MIT1002_01899	0.23	+0.5
2,112,570	-		MIT1002_01899	0.24	+1.2
2,112,589	+		MIT1002_01899	0.27	-0.2
2,112,597	-		MIT1002_01899	0.29	-0.5
2,112,669	+		MIT1002_01899	0.41	+1.4
2,112,696	+		MIT1002_01899	0.46	-1.3
2,112,709	-		MIT1002_01899	0.48	+0.1
2,112,711	-		MIT1002_01899	0.49	-0.1
2,112,732	+		MIT1002_01899	0.52	-1.5
2,112,740	-		MIT1002_01899	0.54	+0.2
2,112,740	-		MIT1002_01899	0.54	+0.7
2,112,742	-		MIT1002_01899	0.54	+1.1
2,112,744	+		MIT1002_01899	0.55	-0.0
2,112,764	+		MIT1002_01899	0.58	+0.7
2,112,769	+		MIT1002_01899	0.59	-0.1
2,112,769	+		MIT1002_01899	0.59	+0.3
2,112,777	-		MIT1002_01899	0.60	-0.3
2,112,784	-		MIT1002_01899	0.62	+0.2
2,112,788	-		MIT1002_01899	0.62	-3.1
2,112,788	-		MIT1002_01899	0.62	+0.8
2,112,788	-		MIT1002_01899	0.62	-1.1
2,112,814	-		MIT1002_01899	0.67	+1.5
2,112,817	-		MIT1002_01899	0.67	-0.8
2,112,831	-		MIT1002_01899	0.70	+0.1
2,112,832	-		MIT1002_01899	0.70	-1.6
2,112,833	-		MIT1002_01899	0.70	+0.6
2,112,867	+		MIT1002_01899	0.76	+1.2
2,112,867	+		MIT1002_01899	0.76	-0.2
2,112,875	-		MIT1002_01899	0.78	+2.0
2,112,885	-		MIT1002_01899	0.79	+2.3
2,112,891	+		MIT1002_01899	0.80	+0.6
2,112,899	-		MIT1002_01899	0.82	+1.2
2,112,899	-		MIT1002_01899	0.82	-0.2
2,112,904	-		MIT1002_01899	0.83	+0.3
2,113,271	+		MIT1002_01900	0.18	+0.8
2,113,293	-		MIT1002_01900	0.20	-0.1
2,113,397	-		MIT1002_01900	0.30	+0.6
2,113,397	-		MIT1002_01900	0.30	+0.1
2,113,397	-		MIT1002_01900	0.30	-1.4
2,113,492	+		MIT1002_01900	0.40	+0.7
2,113,526	+		MIT1002_01900	0.43	+0.4
2,113,675	-		MIT1002_01900	0.57	+0.4
2,113,786	-		MIT1002_01900	0.68	+1.0
2,113,857	-		MIT1002_01900	0.75	+1.1
2,113,874	+		MIT1002_01900	0.77	-1.5
2,113,893	+		MIT1002_01900	0.79	-0.7
2,113,901	-		MIT1002_01900	0.80	-1.1