Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01829

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
2,037,705	-				+0.5
2,037,888	+				-2.7
2,037,896	-				+1.0
2,037,896	-				+0.2
2,037,896	-				+0.5
2,037,896	-				+0.9
2,037,898	-				-0.8
2,037,928	+				-1.2
2,037,938	+				+1.4
2,038,048	+		MIT1002_01829	0.13	+0.7
2,038,048	+		MIT1002_01829	0.13	-0.3
2,038,054	+		MIT1002_01829	0.14	-0.2
2,038,054	+		MIT1002_01829	0.14	-0.2
2,038,056	-		MIT1002_01829	0.14	+0.9
2,038,062	-		MIT1002_01829	0.15	-0.3
2,038,077	+		MIT1002_01829	0.18	+0.0
2,038,077	+		MIT1002_01829	0.18	-2.5
2,038,082	+		MIT1002_01829	0.19	+0.4
2,038,085	-		MIT1002_01829	0.19	-1.0
2,038,137	+		MIT1002_01829	0.29	+1.0
2,038,147	+		MIT1002_01829	0.31	-0.2
2,038,250	-		MIT1002_01829	0.50	-0.8
2,038,366	+		MIT1002_01829	0.71	-1.1
2,038,419	-		MIT1002_01829	0.81	-2.2
2,038,420	+		MIT1002_01829	0.81	+0.2
2,038,420	+		MIT1002_01829	0.81	+0.2
2,038,420	+		MIT1002_01829	0.81	-2.6
2,038,428	-		MIT1002_01829	0.83	-0.6
2,038,440	-		MIT1002_01829	0.85	+0.9
2,038,440	-		MIT1002_01829	0.85	-1.0
2,038,451	-		MIT1002_01829	0.87	-1.2
2,038,503	+				+1.5
2,038,785	-				-2.8
2,038,815	-				-2.7
2,038,822	+				+1.0
2,038,896	-				+0.3
2,038,901	-				-0.9
2,038,948	-				-2.2
2,039,002	+				-0.9
2,039,009	+				+0.8
2,039,012	-				-2.2
2,039,012	-				+0.8
2,039,012	-				-3.8
2,039,205	-				+1.1
2,039,420	+		MIT1002_01830	0.17	-3.5
2,039,420	+		MIT1002_01830	0.17	-1.4
2,039,420	+		MIT1002_01830	0.17	-0.8
2,039,420	+		MIT1002_01830	0.17	-0.7
2,039,420	+		MIT1002_01830	0.17	-1.6
2,039,428	-		MIT1002_01830	0.18	-1.6
2,039,428	-		MIT1002_01830	0.18	-2.3
2,039,428	-		MIT1002_01830	0.18	-0.5
2,039,428	-		MIT1002_01830	0.18	-0.6
2,039,428	-		MIT1002_01830	0.18	+0.2
2,039,428	-		MIT1002_01830	0.18	-0.9
2,039,428	-		MIT1002_01830	0.18	-2.7
2,039,428	-		MIT1002_01830	0.18	-2.5
2,039,428	-		MIT1002_01830	0.18	-0.2
2,039,428	-		MIT1002_01830	0.18	-0.8
2,039,469	+		MIT1002_01830	0.20	-1.7
2,039,494	-		MIT1002_01830	0.21	+0.2