Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01800

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
2,002,994	+		MIT1002_01799	0.29	-0.2
2,003,000	-		MIT1002_01799	0.30	+0.5
2,003,157	-		MIT1002_01799	0.42	+1.3
2,003,157	-		MIT1002_01799	0.42	-0.2
2,003,338	+		MIT1002_01799	0.57	+0.2
2,003,351	+		MIT1002_01799	0.58	+1.3
2,003,419	+		MIT1002_01799	0.64	-0.9
2,003,496	+		MIT1002_01799	0.70	-0.9
2,003,496	+		MIT1002_01799	0.70	-0.2
2,003,504	-		MIT1002_01799	0.71	-0.2
2,003,506	-		MIT1002_01799	0.71	+0.8
2,003,568	+		MIT1002_01799	0.76	-0.8
2,003,580	+		MIT1002_01799	0.77	+0.1
2,003,689	-		MIT1002_01799	0.86	+1.3
2,003,704	+		MIT1002_01799	0.87	+2.0
2,003,704	+		MIT1002_01799	0.87	+2.0
2,003,704	+		MIT1002_01799	0.87	-0.1
2,003,704	+		MIT1002_01799	0.87	-0.3
2,003,704	+		MIT1002_01799	0.87	+0.9
2,003,704	+		MIT1002_01799	0.87	+2.6
2,003,704	+		MIT1002_01799	0.87	-2.5
2,003,710	-		MIT1002_01799	0.87	-1.7
2,003,712	-		MIT1002_01799	0.88	+0.6
2,003,712	-		MIT1002_01799	0.88	+0.4
2,003,712	-		MIT1002_01799	0.88	-0.7
2,003,712	-		MIT1002_01799	0.88	+0.0
2,003,712	-		MIT1002_01799	0.88	+0.4
2,003,718	-		MIT1002_01799	0.88	+2.3
2,003,840	+				+0.9
2,003,841	+				-0.4
2,003,978	-				-0.6
2,003,978	-				-1.5
2,003,978	-				+0.5
2,003,978	-				+0.4
2,003,978	-				-0.4
2,003,985	-				+0.2
2,003,985	-				+2.8
2,003,985	-				-1.5
2,004,031	-				+0.7
2,004,031	-				+0.8
2,004,045	+				+2.3
2,004,054	-				-0.4
2,004,116	-				+0.8
2,004,117	+				+0.7
2,004,118	-				-0.5
2,004,119	-				+1.9
2,004,164	+				-0.4
2,004,164	+				+0.3
2,004,164	+				+0.3
2,004,172	-		MIT1002_01800	0.10	-0.7
2,004,172	-		MIT1002_01800	0.10	-2.0
2,004,174	+		MIT1002_01800	0.10	+3.1
2,004,174	+		MIT1002_01800	0.10	-0.8
2,004,182	-		MIT1002_01800	0.11	+1.5
2,004,182	-		MIT1002_01800	0.11	+1.3
2,004,182	-		MIT1002_01800	0.11	+0.4
2,004,343	-		MIT1002_01800	0.18	-0.2
2,004,408	-		MIT1002_01800	0.21	+1.1
2,004,420	+		MIT1002_01800	0.22	+0.4
2,004,444	+		MIT1002_01800	0.23	+1.0
2,004,444	+		MIT1002_01800	0.23	+0.3
2,004,444	+		MIT1002_01800	0.23	-1.5
2,004,452	-		MIT1002_01800	0.23	+1.3
2,004,452	-		MIT1002_01800	0.23	-1.1
2,004,452	-		MIT1002_01800	0.23	+0.6
2,004,452	-		MIT1002_01800	0.23	+0.6
2,004,645	+		MIT1002_01800	0.32	+3.0
2,004,653	+		MIT1002_01800	0.32	+0.2
2,004,685	+		MIT1002_01800	0.34	-0.5
2,004,725	-		MIT1002_01800	0.35	+0.3
2,004,860	-		MIT1002_01800	0.42	+3.2
2,004,899	+		MIT1002_01800	0.43	-2.7
2,004,931	+		MIT1002_01800	0.45	+0.5
2,004,931	+		MIT1002_01800	0.45	+1.6
2,004,934	-		MIT1002_01800	0.45	-0.2
2,004,934	-		MIT1002_01800	0.45	+0.0
2,004,939	-		MIT1002_01800	0.45	+0.2
2,004,951	-		MIT1002_01800	0.46	+1.1
2,004,965	-		MIT1002_01800	0.46	-0.2
2,004,968	+		MIT1002_01800	0.46	-1.4
2,005,056	-		MIT1002_01800	0.51	-1.2
2,005,124	-		MIT1002_01800	0.54	+0.2
2,005,238	+		MIT1002_01800	0.59	+1.0
2,005,339	+		MIT1002_01800	0.63	-1.0
2,005,383	-		MIT1002_01800	0.65	+0.6
2,005,412	+		MIT1002_01800	0.67	+0.3
2,005,420	-		MIT1002_01800	0.67	-0.8
2,005,441	+		MIT1002_01800	0.68	+0.3
2,005,441	-		MIT1002_01800	0.68	+2.9
2,005,441	-		MIT1002_01800	0.68	-1.5
2,005,502	-		MIT1002_01800	0.71	-0.4
2,005,540	+		MIT1002_01800	0.73	-0.4
2,005,547	-		MIT1002_01800	0.73	+1.3
2,005,548	-		MIT1002_01800	0.73	+0.4
2,005,607	-		MIT1002_01800	0.76	+0.5
2,005,661	+		MIT1002_01800	0.78	+0.9
2,005,668	+		MIT1002_01800	0.78	+1.4
2,005,669	+		MIT1002_01800	0.78	+1.8
2,005,681	+		MIT1002_01800	0.79	+0.6
2,005,681	+		MIT1002_01800	0.79	+1.5
2,005,709	+		MIT1002_01800	0.80	+0.5
2,005,709	+		MIT1002_01800	0.80	-0.6
2,005,709	+		MIT1002_01800	0.80	+1.2
2,005,709	+		MIT1002_01800	0.80	+2.4
2,005,717	-		MIT1002_01800	0.81	+0.7
2,005,728	-		MIT1002_01800	0.81	-0.1
2,005,816	+		MIT1002_01800	0.85	+1.4
2,005,868	+		MIT1002_01800	0.87	-0.1
2,005,907	-		MIT1002_01800	0.89	-0.6
2,005,925	-				-0.2
2,005,925	-				-1.0
2,005,925	-				-0.6
2,005,951	+				-1.7
2,005,952	-				-1.0
2,005,997	+				-1.8
2,006,005	-				-0.5
2,006,011	+				+1.5
2,006,011	+				+0.6
2,006,014	-				-1.8
2,006,019	-				+1.6
2,006,118	-				-0.8
2,006,123	-				+0.7
2,006,147	+				+0.9
2,006,191	+				-0.0
2,006,244	+				-2.8
2,006,259	+				+0.0
2,006,275	+				-0.7
2,006,369	-				+0.6
2,006,464	-		MIT1002_01801	0.11	-0.5
2,006,529	-		MIT1002_01801	0.17	-2.1
2,006,559	+		MIT1002_01801	0.20	+1.2
2,006,579	+		MIT1002_01801	0.22	-0.1
2,006,579	-		MIT1002_01801	0.22	-1.8
2,006,581	+		MIT1002_01801	0.22	+0.7
2,006,581	+		MIT1002_01801	0.22	-2.2
2,006,589	-		MIT1002_01801	0.23	-0.1
2,006,589	-		MIT1002_01801	0.23	-1.1
2,006,748	-		MIT1002_01801	0.37	+0.9
2,006,763	+		MIT1002_01801	0.38	+1.1
2,006,771	-		MIT1002_01801	0.39	+0.5
2,006,819	-		MIT1002_01801	0.43	+0.5
2,006,870	+		MIT1002_01801	0.48	+0.5
2,006,880	+		MIT1002_01801	0.49	-0.2
2,006,889	+		MIT1002_01801	0.50	-0.4
2,006,889	+		MIT1002_01801	0.50	+0.2
2,006,903	-		MIT1002_01801	0.51	+0.2
2,007,020	+		MIT1002_01801	0.62	+1.9
2,007,080	-		MIT1002_01801	0.67	+0.9