Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01799

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
2,001,644	+		MIT1002_01798	0.22	-0.1
2,001,652	+		MIT1002_01798	0.23	-0.2
2,001,652	-		MIT1002_01798	0.23	-2.0
2,001,660	-		MIT1002_01798	0.24	+1.4
2,001,660	-		MIT1002_01798	0.24	-1.8
2,001,660	-		MIT1002_01798	0.24	-0.9
2,001,684	-		MIT1002_01798	0.26	+2.8
2,001,689	+		MIT1002_01798	0.27	-2.8
2,001,737	+		MIT1002_01798	0.32	-0.6
2,001,799	+		MIT1002_01798	0.38	+0.4
2,001,799	+		MIT1002_01798	0.38	-1.6
2,001,807	-		MIT1002_01798	0.39	-0.2
2,001,822	-		MIT1002_01798	0.41	-0.4
2,001,827	-		MIT1002_01798	0.41	+0.1
2,001,835	-		MIT1002_01798	0.42	+1.2
2,001,840	+		MIT1002_01798	0.42	+0.3
2,001,849	-		MIT1002_01798	0.43	-0.2
2,001,855	-		MIT1002_01798	0.44	-0.2
2,001,901	+		MIT1002_01798	0.49	+0.2
2,001,901	+		MIT1002_01798	0.49	-0.3
2,001,901	+		MIT1002_01798	0.49	-0.1
2,001,909	-		MIT1002_01798	0.50	+0.9
2,001,968	+		MIT1002_01798	0.56	+1.0
2,001,968	+		MIT1002_01798	0.56	-0.4
2,001,976	-		MIT1002_01798	0.57	+2.2
2,001,985	+		MIT1002_01798	0.58	+1.5
2,001,995	+		MIT1002_01798	0.59	+0.1
2,001,998	-		MIT1002_01798	0.59	+0.1
2,002,047	-		MIT1002_01798	0.64	+0.7
2,002,170	-		MIT1002_01798	0.77	-1.3
2,002,187	-		MIT1002_01798	0.79	+0.2
2,002,364	+				+0.9
2,002,372	-				-0.3
2,002,485	-				+0.6
2,002,485	-				+0.5
2,002,486	-				-0.7
2,002,525	+				+0.8
2,002,533	-				-0.5
2,002,535	+				-0.9
2,002,535	+				+1.5
2,002,535	+				+1.8
2,002,535	+				-0.6
2,002,535	+				+1.5
2,002,535	+				+0.0
2,002,535	+				-0.0
2,002,535	+				-0.1
2,002,535	+				-1.0
2,002,535	+				-0.2
2,002,535	+				-2.0
2,002,540	+				+0.6
2,002,543	-				+0.7
2,002,543	-				-0.3
2,002,543	-				+0.2
2,002,543	-				-0.6
2,002,549	+				-2.1
2,002,550	+				+0.5
2,002,573	-				+1.0
2,002,689	+				-0.7
2,002,701	+				-0.0
2,002,704	-				+1.0
2,002,704	-				+0.6
2,002,704	-				-0.2
2,002,719	-				-1.8
2,002,719	-				+0.9
2,002,775	+		MIT1002_01799	0.11	+0.1
2,002,775	+		MIT1002_01799	0.11	-0.6
2,002,783	-		MIT1002_01799	0.12	+1.7
2,002,783	-		MIT1002_01799	0.12	-2.8
2,002,783	-		MIT1002_01799	0.12	-1.1
2,002,783	-		MIT1002_01799	0.12	+0.1
2,002,820	+		MIT1002_01799	0.15	-1.0
2,002,994	+		MIT1002_01799	0.29	-0.2
2,003,000	-		MIT1002_01799	0.30	+0.5
2,003,157	-		MIT1002_01799	0.42	+1.3
2,003,157	-		MIT1002_01799	0.42	-0.2
2,003,338	+		MIT1002_01799	0.57	+0.2
2,003,351	+		MIT1002_01799	0.58	+1.3
2,003,419	+		MIT1002_01799	0.64	-0.9
2,003,496	+		MIT1002_01799	0.70	-0.9
2,003,496	+		MIT1002_01799	0.70	-0.2
2,003,504	-		MIT1002_01799	0.71	-0.2
2,003,506	-		MIT1002_01799	0.71	+0.8
2,003,568	+		MIT1002_01799	0.76	-0.8
2,003,580	+		MIT1002_01799	0.77	+0.1
2,003,689	-		MIT1002_01799	0.86	+1.3
2,003,704	+		MIT1002_01799	0.87	+2.0
2,003,704	+		MIT1002_01799	0.87	+2.0
2,003,704	+		MIT1002_01799	0.87	-0.1
2,003,704	+		MIT1002_01799	0.87	-0.3
2,003,704	+		MIT1002_01799	0.87	+0.9
2,003,704	+		MIT1002_01799	0.87	+2.6
2,003,704	+		MIT1002_01799	0.87	-2.5
2,003,710	-		MIT1002_01799	0.87	-1.7
2,003,712	-		MIT1002_01799	0.88	+0.6
2,003,712	-		MIT1002_01799	0.88	+0.4
2,003,712	-		MIT1002_01799	0.88	-0.7
2,003,712	-		MIT1002_01799	0.88	+0.0
2,003,712	-		MIT1002_01799	0.88	+0.4
2,003,718	-		MIT1002_01799	0.88	+2.3
2,003,840	+				+0.9
2,003,841	+				-0.4
2,003,978	-				-0.6
2,003,978	-				-1.5
2,003,978	-				+0.5
2,003,978	-				+0.4
2,003,978	-				-0.4
2,003,985	-				+0.2
2,003,985	-				+2.8
2,003,985	-				-1.5
2,004,031	-				+0.7
2,004,031	-				+0.8
2,004,045	+				+2.3
2,004,054	-				-0.4
2,004,116	-				+0.8
2,004,117	+				+0.7
2,004,118	-				-0.5
2,004,119	-				+1.9
2,004,164	+				-0.4
2,004,164	+				+0.3
2,004,164	+				+0.3
2,004,172	-		MIT1002_01800	0.10	-0.7
2,004,172	-		MIT1002_01800	0.10	-2.0
2,004,174	+		MIT1002_01800	0.10	+3.1
2,004,174	+		MIT1002_01800	0.10	-0.8
2,004,182	-		MIT1002_01800	0.11	+1.5
2,004,182	-		MIT1002_01800	0.11	+1.3
2,004,182	-		MIT1002_01800	0.11	+0.4
2,004,343	-		MIT1002_01800	0.18	-0.2
2,004,408	-		MIT1002_01800	0.21	+1.1
2,004,420	+		MIT1002_01800	0.22	+0.4
2,004,444	+		MIT1002_01800	0.23	+1.0
2,004,444	+		MIT1002_01800	0.23	+0.3
2,004,444	+		MIT1002_01800	0.23	-1.5
2,004,452	-		MIT1002_01800	0.23	+1.3
2,004,452	-		MIT1002_01800	0.23	-1.1
2,004,452	-		MIT1002_01800	0.23	+0.6
2,004,452	-		MIT1002_01800	0.23	+0.6
2,004,645	+		MIT1002_01800	0.32	+3.0
2,004,653	+		MIT1002_01800	0.32	+0.2
2,004,685	+		MIT1002_01800	0.34	-0.5
2,004,725	-		MIT1002_01800	0.35	+0.3
2,004,860	-		MIT1002_01800	0.42	+3.2