Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_01753 and MIT1002_01754 are separated by 298 nucleotides MIT1002_01754 and MIT1002_01755 are separated by 332 nucleotides
MIT1002_01753: MIT1002_01753 - hypothetical protein, at 1,949,070 to 1,949,468
_01753
MIT1002_01754: MIT1002_01754 - hypothetical protein, at 1,949,767 to 1,950,165
_01754
MIT1002_01755: MIT1002_01755 - Transposase, at 1,950,498 to 1,952,132
_01755
Position (kb) 1949
1950
1951 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1948.859 kb on - strand at 1948.867 kb on + strand at 1948.905 kb on + strand at 1948.977 kb on - strand at 1948.979 kb on + strand at 1948.979 kb on + strand at 1948.990 kb on + strand at 1949.012 kb on + strand at 1949.042 kb on + strand at 1949.133 kb on + strand, within MIT1002_01753 at 1949.141 kb on + strand, within MIT1002_01753 at 1949.143 kb on + strand, within MIT1002_01753 at 1949.143 kb on + strand, within MIT1002_01753 at 1949.151 kb on - strand, within MIT1002_01753 at 1949.195 kb on + strand, within MIT1002_01753 at 1949.206 kb on - strand, within MIT1002_01753 at 1949.211 kb on - strand, within MIT1002_01753 at 1949.226 kb on + strand, within MIT1002_01753 at 1949.231 kb on - strand, within MIT1002_01753 at 1949.234 kb on - strand, within MIT1002_01753 at 1949.234 kb on - strand, within MIT1002_01753 at 1949.296 kb on - strand, within MIT1002_01753 at 1949.340 kb on + strand, within MIT1002_01753 at 1949.350 kb on + strand, within MIT1002_01753 at 1949.397 kb on + strand, within MIT1002_01753 at 1949.397 kb on + strand, within MIT1002_01753 at 1949.405 kb on - strand, within MIT1002_01753 at 1949.405 kb on - strand, within MIT1002_01753 at 1949.405 kb on - strand, within MIT1002_01753 at 1949.405 kb on - strand, within MIT1002_01753 at 1949.469 kb on + strand at 1949.806 kb on + strand at 1949.806 kb on + strand at 1949.812 kb on + strand, within MIT1002_01754 at 1949.814 kb on - strand, within MIT1002_01754 at 1949.814 kb on - strand, within MIT1002_01754 at 1949.814 kb on - strand, within MIT1002_01754 at 1949.814 kb on - strand, within MIT1002_01754 at 1949.822 kb on + strand, within MIT1002_01754 at 1949.895 kb on + strand, within MIT1002_01754 at 1949.910 kb on + strand, within MIT1002_01754 at 1949.931 kb on - strand, within MIT1002_01754 at 1949.952 kb on - strand, within MIT1002_01754 at 1949.952 kb on - strand, within MIT1002_01754 at 1950.051 kb on + strand, within MIT1002_01754 at 1950.054 kb on - strand, within MIT1002_01754 at 1950.144 kb on - strand at 1950.166 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3 remove 1,948,859 - -0.2 1,948,867 + +0.5 1,948,905 + +2.5 1,948,977 - +0.9 1,948,979 + +1.6 1,948,979 + +0.4 1,948,990 + -0.5 1,949,012 + -0.1 1,949,042 + +2.6 1,949,133 + MIT1002_01753 0.16 +2.3 1,949,141 + MIT1002_01753 0.18 +0.4 1,949,143 + MIT1002_01753 0.18 -0.6 1,949,143 + MIT1002_01753 0.18 -3.0 1,949,151 - MIT1002_01753 0.20 -0.4 1,949,195 + MIT1002_01753 0.31 -0.3 1,949,206 - MIT1002_01753 0.34 +3.5 1,949,211 - MIT1002_01753 0.35 -1.6 1,949,226 + MIT1002_01753 0.39 +0.2 1,949,231 - MIT1002_01753 0.40 -1.8 1,949,234 - MIT1002_01753 0.41 +1.7 1,949,234 - MIT1002_01753 0.41 +1.1 1,949,296 - MIT1002_01753 0.57 +1.5 1,949,340 + MIT1002_01753 0.68 +3.0 1,949,350 + MIT1002_01753 0.70 -2.2 1,949,397 + MIT1002_01753 0.82 +0.6 1,949,397 + MIT1002_01753 0.82 -1.7 1,949,405 - MIT1002_01753 0.84 -0.4 1,949,405 - MIT1002_01753 0.84 -3.0 1,949,405 - MIT1002_01753 0.84 -0.1 1,949,405 - MIT1002_01753 0.84 -3.2 1,949,469 + +0.7 1,949,806 + -0.4 1,949,806 + +0.7 1,949,812 + MIT1002_01754 0.11 -2.6 1,949,814 - MIT1002_01754 0.12 +0.0 1,949,814 - MIT1002_01754 0.12 -2.6 1,949,814 - MIT1002_01754 0.12 -1.2 1,949,814 - MIT1002_01754 0.12 -1.7 1,949,822 + MIT1002_01754 0.14 -0.2 1,949,895 + MIT1002_01754 0.32 +0.2 1,949,910 + MIT1002_01754 0.36 -1.0 1,949,931 - MIT1002_01754 0.41 +0.6 1,949,952 - MIT1002_01754 0.46 +0.9 1,949,952 - MIT1002_01754 0.46 +1.0 1,950,051 + MIT1002_01754 0.71 +0.5 1,950,054 - MIT1002_01754 0.72 -1.5 1,950,144 - -0.1 1,950,166 + +0.7
Or see this region's nucleotide sequence