Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01677

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
1,855,680	+				-2.1
1,855,686	-				+0.7
1,855,686	-				-1.5
1,855,688	-				+1.0
1,855,688	-				-0.5
1,855,738	-				-0.9
1,855,857	-				-3.4
1,855,895	+				-0.5
1,855,927	+				+1.2
1,855,931	+				-1.3
1,855,931	+				-0.7
1,856,042	-				-2.0
1,856,187	+				+0.6
1,856,195	-				-0.9
1,856,204	-				+1.1
1,856,273	-		MIT1002_01677	0.10	-0.6
1,856,313	+		MIT1002_01677	0.11	+1.0
1,856,356	+		MIT1002_01677	0.12	-2.6
1,856,356	+		MIT1002_01677	0.12	+1.0
1,856,356	+		MIT1002_01677	0.12	+0.8
1,856,364	-		MIT1002_01677	0.13	+0.2
1,856,364	-		MIT1002_01677	0.13	+0.3
1,856,364	-		MIT1002_01677	0.13	-0.9
1,856,460	-		MIT1002_01677	0.15	+0.2
1,856,495	+		MIT1002_01677	0.16	+0.4
1,856,505	+		MIT1002_01677	0.16	-0.5
1,856,513	-		MIT1002_01677	0.17	-1.9
1,856,513	-		MIT1002_01677	0.17	+1.7
1,856,513	-		MIT1002_01677	0.17	+0.9
1,856,516	-		MIT1002_01677	0.17	-0.4
1,856,523	-		MIT1002_01677	0.17	-0.4
1,856,643	+		MIT1002_01677	0.20	-0.2
1,856,727	+		MIT1002_01677	0.22	-0.6
1,856,828	+		MIT1002_01677	0.25	-0.4
1,856,836	-		MIT1002_01677	0.25	-1.0
1,856,855	-		MIT1002_01677	0.26	-4.4
1,856,879	-		MIT1002_01677	0.26	-0.9
1,856,965	+		MIT1002_01677	0.29	-1.1
1,857,112	+		MIT1002_01677	0.32	-2.5
1,857,193	+		MIT1002_01677	0.35	+0.5
1,857,193	+		MIT1002_01677	0.35	+0.0
1,857,193	+		MIT1002_01677	0.35	-3.3
1,857,193	+		MIT1002_01677	0.35	-0.8
1,857,201	-		MIT1002_01677	0.35	+1.1
1,857,229	+		MIT1002_01677	0.36	-2.4
1,857,229	+		MIT1002_01677	0.36	-1.7
1,857,237	-		MIT1002_01677	0.36	-1.2
1,857,237	-		MIT1002_01677	0.36	+0.8
1,857,237	-		MIT1002_01677	0.36	-0.3
1,857,336	+		MIT1002_01677	0.38	+0.2
1,857,372	+		MIT1002_01677	0.39	+1.0
1,857,467	+		MIT1002_01677	0.42	-4.3
1,857,467	+		MIT1002_01677	0.42	-1.8
1,857,475	-		MIT1002_01677	0.42	-2.0
1,857,475	-		MIT1002_01677	0.42	+0.1
1,857,475	-		MIT1002_01677	0.42	+0.3
1,857,481	+		MIT1002_01677	0.42	+0.5
1,857,499	+		MIT1002_01677	0.43	-1.2
1,857,507	-		MIT1002_01677	0.43	-1.2
1,857,580	+		MIT1002_01677	0.45	-1.3
1,857,588	-		MIT1002_01677	0.45	-0.4
1,857,588	-		MIT1002_01677	0.45	+2.6
1,857,616	+		MIT1002_01677	0.46	+0.4
1,857,651	+		MIT1002_01677	0.47	-0.5
1,857,679	+		MIT1002_01677	0.47	-0.8
1,857,687	-		MIT1002_01677	0.48	-1.4
1,857,715	-		MIT1002_01677	0.48	-1.1
1,857,715	-		MIT1002_01677	0.48	-2.0
1,857,734	+		MIT1002_01677	0.49	-1.1
1,857,807	-		MIT1002_01677	0.51	+0.2
1,857,848	+		MIT1002_01677	0.52	+0.9
1,857,883	-		MIT1002_01677	0.53	-3.6
1,857,913	-		MIT1002_01677	0.54	-2.2
1,858,112	+		MIT1002_01677	0.59	-0.1
1,858,112	+		MIT1002_01677	0.59	+0.4
1,858,112	+		MIT1002_01677	0.59	-0.8
1,858,112	+		MIT1002_01677	0.59	-0.7
1,858,120	-		MIT1002_01677	0.59	+0.9
1,858,120	-		MIT1002_01677	0.59	+2.1
1,858,120	-		MIT1002_01677	0.59	-0.5
1,858,120	-		MIT1002_01677	0.59	+1.5
1,858,120	-		MIT1002_01677	0.59	-1.1
1,858,158	-		MIT1002_01677	0.60	+0.1
1,858,165	+		MIT1002_01677	0.60	+0.7
1,858,245	+		MIT1002_01677	0.62	-1.8
1,858,253	-		MIT1002_01677	0.63	-0.8
1,858,258	+		MIT1002_01677	0.63	-0.5
1,858,356	+		MIT1002_01677	0.65	+1.0
1,858,483	+		MIT1002_01677	0.69	-1.8
1,858,514	+		MIT1002_01677	0.69	-0.3
1,858,514	+		MIT1002_01677	0.69	+0.7
1,858,514	+		MIT1002_01677	0.69	-0.9
1,858,524	-		MIT1002_01677	0.70	+0.3
1,858,539	-		MIT1002_01677	0.70	-0.8
1,858,539	-		MIT1002_01677	0.70	+0.5
1,858,550	-		MIT1002_01677	0.70	-1.8
1,858,568	+		MIT1002_01677	0.71	-0.8
1,858,576	-		MIT1002_01677	0.71	-2.2
1,858,580	+		MIT1002_01677	0.71	-0.6
1,858,588	-		MIT1002_01677	0.71	-1.3
1,858,710	+		MIT1002_01677	0.75	-0.5
1,858,808	-		MIT1002_01677	0.77	-1.2
1,858,822	+		MIT1002_01677	0.78	-1.6
1,858,865	+		MIT1002_01677	0.79	+0.1
1,858,873	-		MIT1002_01677	0.79	-0.5
1,859,014	+		MIT1002_01677	0.83	-0.1
1,859,031	+		MIT1002_01677	0.83	-0.1
1,859,049	+		MIT1002_01677	0.84	-0.2
1,859,049	+		MIT1002_01677	0.84	+0.6
1,859,075	+		MIT1002_01677	0.84	+0.3
1,859,079	+		MIT1002_01677	0.84	-1.6
1,859,111	-		MIT1002_01677	0.85	+0.7
1,859,113	+		MIT1002_01677	0.85	-1.1
1,859,121	-		MIT1002_01677	0.86	-0.5
1,859,162	-		MIT1002_01677	0.87	+0.7
1,859,200	+		MIT1002_01677	0.88	-1.5
1,859,333	-				-0.3
1,859,333	-				-1.0
1,859,406	+				-1.0
1,859,440	+				+0.7
1,859,448	-				-0.8
1,859,486	+				-0.8
1,859,527	+				-1.0
1,859,606	+				+0.2
1,859,611	+				+0.4
1,859,640	-				-2.3
1,859,662	+				+0.1
1,859,670	-				-1.8
1,859,670	-				-2.0
1,859,774	+				-0.0
1,859,806	+				+1.0
1,859,806	-				-0.9
1,859,867	+				-0.1
1,859,967	+		MIT1002_01678	0.14	+0.8
1,859,975	-		MIT1002_01678	0.15	+0.3
1,860,026	+		MIT1002_01678	0.20	+0.1
1,860,026	+		MIT1002_01678	0.20	+0.2
1,860,036	+		MIT1002_01678	0.21	-1.8
1,860,036	+		MIT1002_01678	0.21	+0.3
1,860,044	-		MIT1002_01678	0.21	-0.3
1,860,044	-		MIT1002_01678	0.21	+0.0
1,860,148	-		MIT1002_01678	0.31	-2.4
1,860,161	+		MIT1002_01678	0.32	+0.3
1,860,162	+		MIT1002_01678	0.32	+1.3
1,860,162	+		MIT1002_01678	0.32	+0.5
1,860,162	+		MIT1002_01678	0.32	+0.1
1,860,165	-		MIT1002_01678	0.33	-0.3
1,860,169	-		MIT1002_01678	0.33	-0.6
1,860,170	-		MIT1002_01678	0.33	+0.1
1,860,170	-		MIT1002_01678	0.33	+0.1
1,860,170	-		MIT1002_01678	0.33	-0.8
1,860,178	-		MIT1002_01678	0.34	+0.4
1,860,178	-		MIT1002_01678	0.34	+0.3
1,860,190	-		MIT1002_01678	0.35	-0.6
1,860,273	+		MIT1002_01678	0.43	+0.2
1,860,322	+		MIT1002_01678	0.47	-0.3
1,860,337	-		MIT1002_01678	0.49	+1.3
1,860,349	+		MIT1002_01678	0.50	+1.7
1,860,349	+		MIT1002_01678	0.50	-1.5
1,860,349	+		MIT1002_01678	0.50	-0.3
1,860,357	-		MIT1002_01678	0.51	-0.4
1,860,357	-		MIT1002_01678	0.51	+2.3
1,860,368	-		MIT1002_01678	0.52	+0.1
1,860,431	+		MIT1002_01678	0.57	-1.7
1,860,441	+		MIT1002_01678	0.58	-0.8
1,860,456	-		MIT1002_01678	0.60	-1.2
1,860,480	+		MIT1002_01678	0.62	+0.7
1,860,568	-		MIT1002_01678	0.70	-1.1
1,860,595	+		MIT1002_01678	0.73	+0.5
1,860,596	-		MIT1002_01678	0.73	+0.1
1,860,601	-		MIT1002_01678	0.73	+0.0
1,860,621	+		MIT1002_01678	0.75	-0.4
1,860,634	-		MIT1002_01678	0.76	-0.2