Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01666

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
1,839,593	+				+1.3
1,839,593	+				-4.3
1,839,593	+				-0.4
1,839,594	+				-0.4
1,839,601	-				+0.2
1,839,601	-				+0.1
1,839,601	-				-1.4
1,839,602	-				+1.2
1,839,619	-				+0.9
1,839,686	-				-0.4
1,839,726	+		MIT1002_01665	0.10	+0.5
1,839,759	+		MIT1002_01665	0.14	+2.5
1,839,812	-		MIT1002_01665	0.20	-2.1
1,839,818	+		MIT1002_01665	0.21	-0.1
1,839,825	-		MIT1002_01665	0.21	+0.6
1,839,838	+		MIT1002_01665	0.23	-1.2
1,839,861	+		MIT1002_01665	0.25	+0.5
1,839,880	-		MIT1002_01665	0.28	+0.7
1,839,965	+		MIT1002_01665	0.37	+1.3
1,840,007	+		MIT1002_01665	0.42	+0.2
1,840,037	+		MIT1002_01665	0.45	-2.0
1,840,052	+		MIT1002_01665	0.47	+1.2
1,840,055	-		MIT1002_01665	0.47	+0.7
1,840,092	+		MIT1002_01665	0.51	+1.6
1,840,154	-		MIT1002_01665	0.58	+1.0
1,840,225	+		MIT1002_01665	0.66	+0.1
1,840,225	+		MIT1002_01665	0.66	+0.7
1,840,225	+		MIT1002_01665	0.66	-0.0
1,840,233	-		MIT1002_01665	0.67	-2.0
1,840,235	-		MIT1002_01665	0.67	-0.0
1,840,276	+		MIT1002_01665	0.72	-2.0
1,840,276	+		MIT1002_01665	0.72	+0.1
1,840,283	-		MIT1002_01665	0.72	+1.2
1,840,284	-		MIT1002_01665	0.73	+0.3
1,840,402	+		MIT1002_01665	0.86	-0.7
1,840,545	-				-0.3
1,840,615	+				-3.5
1,840,631	-				-0.4
1,840,653	+				+1.7
1,840,679	+				-3.8
1,840,687	-				-0.4
1,840,703	+				-1.2
1,840,804	+		MIT1002_01666	0.13	+0.8
1,840,842	+		MIT1002_01666	0.15	-1.0
1,840,863	-		MIT1002_01666	0.16	+1.5
1,840,863	-		MIT1002_01666	0.16	-0.2
1,840,948	+		MIT1002_01666	0.21	-1.1
1,840,979	+		MIT1002_01666	0.22	-0.7
1,840,982	-		MIT1002_01666	0.22	-3.4
1,840,987	+		MIT1002_01666	0.22	-0.8
1,840,995	-		MIT1002_01666	0.23	-0.4
1,841,019	-		MIT1002_01666	0.24	-1.7
1,841,019	-		MIT1002_01666	0.24	-0.1
1,841,043	-		MIT1002_01666	0.25	+0.1
1,841,185	+		MIT1002_01666	0.32	-1.0
1,841,273	+		MIT1002_01666	0.37	-2.0
1,841,281	-		MIT1002_01666	0.37	-0.3
1,841,287	-		MIT1002_01666	0.37	-0.2
1,841,355	-		MIT1002_01666	0.41	-1.8
1,841,365	-		MIT1002_01666	0.41	-0.2
1,841,373	-		MIT1002_01666	0.42	-1.1
1,841,378	+		MIT1002_01666	0.42	+0.4
1,841,434	-		MIT1002_01666	0.45	-2.0
1,841,439	-		MIT1002_01666	0.45	-0.2
1,841,551	+		MIT1002_01666	0.50	-2.9
1,841,591	-		MIT1002_01666	0.52	-1.3
1,841,689	-		MIT1002_01666	0.57	-2.1
1,841,752	-		MIT1002_01666	0.60	+0.1
1,841,854	+		MIT1002_01666	0.65	-0.1
1,841,859	+		MIT1002_01666	0.66	-1.0
1,841,883	+		MIT1002_01666	0.67	-3.1
1,841,961	+		MIT1002_01666	0.71	-0.5
1,841,961	+		MIT1002_01666	0.71	-2.0
1,841,969	-		MIT1002_01666	0.71	+1.0
1,841,969	-		MIT1002_01666	0.71	-2.4
1,842,054	-		MIT1002_01666	0.75	-0.9
1,842,077	+		MIT1002_01666	0.76	-1.8
1,842,212	-		MIT1002_01666	0.83	-2.2
1,842,213	-		MIT1002_01666	0.83	-0.6
1,842,312	-		MIT1002_01666	0.88	-0.8
1,842,470	+				+1.1
1,842,479	+				-2.0
1,842,521	-				-0.0
1,842,566	-				-0.3
1,842,581	-				-0.8
1,842,613	-				-1.5
1,842,624	+		MIT1002_01667	0.10	-0.0
1,842,632	-		MIT1002_01667	0.11	-0.3
1,842,677	-		MIT1002_01667	0.17	-1.6
1,842,770	+		MIT1002_01667	0.28	+0.7
1,842,817	+		MIT1002_01667	0.34	-2.6
1,842,825	-		MIT1002_01667	0.35	-0.7
1,842,893	-		MIT1002_01667	0.44	+0.4
1,842,908	-		MIT1002_01667	0.46	-1.6
1,842,909	-		MIT1002_01667	0.46	-0.3
1,843,007	+		MIT1002_01667	0.58	-0.4
1,843,007	+		MIT1002_01667	0.58	+2.2
1,843,111	+		MIT1002_01667	0.71	-1.6
1,843,139	+		MIT1002_01667	0.75	-1.0
1,843,263	+				-0.4
1,843,401	-				-3.0
1,843,403	-				-1.1
1,843,414	-				-0.4
1,843,447	+				-0.7
1,843,455	+				+0.6
1,843,463	+				-0.8
1,843,463	+				-1.3
1,843,471	-				-1.4
1,843,471	-				-3.2
1,843,471	-				-2.2
1,843,478	-				-2.1