Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01541

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
1,692,998	+				-0.1
1,693,005	+				-2.8
1,693,048	+		MIT1002_01539	0.15	+0.4
1,693,056	-		MIT1002_01539	0.17	-0.0
1,693,056	-		MIT1002_01539	0.17	+0.9
1,693,056	-		MIT1002_01539	0.17	-0.6
1,693,082	-		MIT1002_01539	0.23	+1.6
1,693,098	-		MIT1002_01539	0.27	-0.2
1,693,166	+		MIT1002_01539	0.44	+2.4
1,693,235	-		MIT1002_01539	0.60	-1.1
1,693,303	-		MIT1002_01539	0.77	+0.8
1,693,303	-		MIT1002_01539	0.77	+0.9
1,693,345	+		MIT1002_01539	0.87	-0.7
1,693,378	+				+0.1
1,693,400	+				-0.6
1,693,499	+		MIT1002_01540	0.14	-0.9
1,693,509	+		MIT1002_01540	0.17	+2.0
1,693,517	-		MIT1002_01540	0.19	+0.4
1,693,526	+		MIT1002_01540	0.22	-3.6
1,693,527	-		MIT1002_01540	0.22	+0.6
1,693,534	-		MIT1002_01540	0.24	-0.7
1,693,576	+		MIT1002_01540	0.37	+0.6
1,693,590	+		MIT1002_01540	0.42	+1.0
1,693,598	-		MIT1002_01540	0.44	-0.2
1,693,618	-		MIT1002_01540	0.50	+0.5
1,693,799	+				-1.1
1,693,799	+				-1.1
1,693,799	+				+0.2
1,693,799	+				+0.1
1,693,799	+				+0.5
1,693,799	+				+0.9
1,693,799	+				+0.5
1,693,807	-				-0.9
1,693,807	-				+1.3
1,693,814	-				+0.3
1,693,923	-				-2.6
1,694,070	-				+1.0
1,694,107	-				+1.2
1,694,152	+				+0.2
1,694,152	+				+0.1
1,694,169	-		MIT1002_01541	0.10	-0.5
1,694,260	-		MIT1002_01541	0.14	-1.2
1,694,287	+		MIT1002_01541	0.15	-0.2
1,694,297	+		MIT1002_01541	0.16	+0.0
1,694,308	-		MIT1002_01541	0.16	-1.2
1,694,338	+		MIT1002_01541	0.17	-1.0
1,694,458	-		MIT1002_01541	0.22	-0.5
1,694,622	-		MIT1002_01541	0.29	-2.4
1,694,753	+		MIT1002_01541	0.34	+1.5
1,694,776	+		MIT1002_01541	0.35	+0.3
1,694,776	+		MIT1002_01541	0.35	-1.0
1,694,776	-		MIT1002_01541	0.35	-0.4
1,694,854	+		MIT1002_01541	0.39	-1.2
1,694,894	-		MIT1002_01541	0.40	+0.5
1,694,955	-		MIT1002_01541	0.43	-0.9
1,695,180	+		MIT1002_01541	0.52	-0.2
1,695,281	+		MIT1002_01541	0.56	+0.9
1,695,281	+		MIT1002_01541	0.56	-1.5
1,695,289	-		MIT1002_01541	0.57	-0.3
1,695,339	-		MIT1002_01541	0.59	-1.0
1,695,557	+		MIT1002_01541	0.68	+0.7
1,695,575	-		MIT1002_01541	0.68	+0.0
1,695,620	+		MIT1002_01541	0.70	-0.5
1,695,676	-		MIT1002_01541	0.73	-2.7
1,695,678	+		MIT1002_01541	0.73	+0.7
1,695,744	+		MIT1002_01541	0.75	-2.0
1,695,767	-		MIT1002_01541	0.76	-3.0
1,695,767	-		MIT1002_01541	0.76	-0.8
1,695,802	-		MIT1002_01541	0.78	-0.5
1,695,818	+		MIT1002_01541	0.78	+1.8
1,695,818	+		MIT1002_01541	0.78	-1.7
1,695,826	-		MIT1002_01541	0.79	+0.1
1,695,998	-		MIT1002_01541	0.86	+0.0
1,695,998	-		MIT1002_01541	0.86	-0.7
1,695,998	-		MIT1002_01541	0.86	+0.8
1,696,003	+		MIT1002_01541	0.86	-0.6
1,696,051	+		MIT1002_01541	0.88	-0.1
1,696,061	+		MIT1002_01541	0.89	+1.1
1,696,061	+		MIT1002_01541	0.89	-0.5
1,696,061	+		MIT1002_01541	0.89	+0.2
1,696,067	-		MIT1002_01541	0.89	+0.3
1,696,069	-		MIT1002_01541	0.89	-0.5
1,696,069	-		MIT1002_01541	0.89	-3.1
1,696,191	+				+0.8
1,696,242	-				-2.8
1,696,242	-				-0.9
1,696,318	+				-1.2
1,696,327	+				-0.6
1,696,516	-				+0.9
1,696,526	-				-3.8
1,696,567	-		MIT1002_01542	0.12	-1.7
1,696,567	-		MIT1002_01542	0.12	-0.1
1,696,618	+		MIT1002_01542	0.16	-0.2
1,696,651	+		MIT1002_01542	0.19	+0.5
1,696,651	+		MIT1002_01542	0.19	+1.6
1,696,651	+		MIT1002_01542	0.19	-2.0
1,696,651	+		MIT1002_01542	0.19	+1.1
1,696,659	-		MIT1002_01542	0.20	+1.7
1,696,659	-		MIT1002_01542	0.20	+1.1
1,696,659	-		MIT1002_01542	0.20	+0.5
1,696,659	-		MIT1002_01542	0.20	-1.0
1,696,659	-		MIT1002_01542	0.20	+1.0
1,696,659	-		MIT1002_01542	0.20	-0.7
1,696,659	-		MIT1002_01542	0.20	+0.6
1,696,659	-		MIT1002_01542	0.20	+1.2
1,696,672	-		MIT1002_01542	0.21	+1.0
1,696,675	+		MIT1002_01542	0.21	-0.1
1,696,675	+		MIT1002_01542	0.21	+1.1
1,696,683	-		MIT1002_01542	0.22	+1.0
1,696,781	-		MIT1002_01542	0.29	-0.3
1,696,833	-		MIT1002_01542	0.33	-2.4
1,697,113	-		MIT1002_01542	0.56	+0.1
1,697,114	-		MIT1002_01542	0.56	-1.0
1,697,140	-		MIT1002_01542	0.58	+1.0
1,697,173	+		MIT1002_01542	0.60	-2.5
1,697,255	+		MIT1002_01542	0.67	+0.3
1,697,275	+		MIT1002_01542	0.68	+0.2
1,697,324	+		MIT1002_01542	0.72	+0.3
1,697,332	-		MIT1002_01542	0.73	-1.3