Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_01412 and MIT1002_01413 are separated by 331 nucleotides MIT1002_01413 and MIT1002_01414 are separated by 45 nucleotides MIT1002_01414 and MIT1002_01415 are separated by 16 nucleotides MIT1002_01415 and MIT1002_01416 are separated by 0 nucleotides
MIT1002_01412: MIT1002_01412 - Transposase, at 1,556,356 to 1,557,330
_01412
MIT1002_01413: MIT1002_01413 - hypothetical protein, at 1,557,662 to 1,557,844
_01413
MIT1002_01414: MIT1002_01414 - Acyl-CoA thioesterase I precursor, at 1,557,890 to 1,558,546
_01414
MIT1002_01415: MIT1002_01415 - Lipoprotein-releasing system ATP-binding protein LolD, at 1,558,563 to 1,559,261
_01415
MIT1002_01416: MIT1002_01416 - outer membrane-specific lipoprotein transporter subunit LolE, at 1,559,262 to 1,561,784
_01416
Position (kb) 1557
1558
1559 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1556.990 kb on + strand, within MIT1002_01412 at 1557.015 kb on + strand, within MIT1002_01412 at 1557.084 kb on - strand, within MIT1002_01412 at 1557.084 kb on - strand, within MIT1002_01412 at 1557.108 kb on - strand, within MIT1002_01412 at 1557.124 kb on + strand, within MIT1002_01412 at 1557.132 kb on - strand, within MIT1002_01412 at 1557.132 kb on - strand, within MIT1002_01412 at 1557.132 kb on - strand, within MIT1002_01412 at 1557.170 kb on + strand, within MIT1002_01412 at 1557.214 kb on + strand, within MIT1002_01412 at 1557.246 kb on + strand at 1557.287 kb on + strand at 1557.328 kb on - strand at 1557.401 kb on + strand at 1557.401 kb on + strand at 1557.502 kb on - strand at 1557.599 kb on + strand at 1557.687 kb on - strand, within MIT1002_01413 at 1557.713 kb on + strand, within MIT1002_01413 at 1557.734 kb on - strand, within MIT1002_01413 at 1557.773 kb on + strand, within MIT1002_01413 at 1557.797 kb on + strand, within MIT1002_01413 at 1557.797 kb on + strand, within MIT1002_01413 at 1557.968 kb on - strand, within MIT1002_01414 at 1557.973 kb on - strand, within MIT1002_01414 at 1558.006 kb on - strand, within MIT1002_01414 at 1558.086 kb on + strand, within MIT1002_01414 at 1558.148 kb on - strand, within MIT1002_01414 at 1558.153 kb on + strand, within MIT1002_01414 at 1558.251 kb on + strand, within MIT1002_01414 at 1558.253 kb on + strand, within MIT1002_01414 at 1558.254 kb on - strand, within MIT1002_01414 at 1558.254 kb on - strand, within MIT1002_01414 at 1558.259 kb on - strand, within MIT1002_01414 at 1558.259 kb on - strand, within MIT1002_01414 at 1558.376 kb on + strand, within MIT1002_01414 at 1558.390 kb on - strand, within MIT1002_01414 at 1558.393 kb on + strand, within MIT1002_01414 at 1558.571 kb on + strand at 1558.656 kb on - strand, within MIT1002_01415 at 1558.693 kb on + strand, within MIT1002_01415 at 1558.701 kb on - strand, within MIT1002_01415 at 1558.709 kb on - strand, within MIT1002_01415 at 1558.727 kb on - strand, within MIT1002_01415 at 1558.780 kb on + strand, within MIT1002_01415 at 1558.896 kb on + strand, within MIT1002_01415 at 1558.914 kb on - strand, within MIT1002_01415 at 1558.953 kb on - strand, within MIT1002_01415 at 1558.962 kb on + strand, within MIT1002_01415 at 1558.979 kb on + strand, within MIT1002_01415 at 1558.982 kb on + strand, within MIT1002_01415 at 1558.990 kb on + strand, within MIT1002_01415 at 1559.194 kb on + strand at 1559.264 kb on - strand at 1559.339 kb on + strand at 1559.349 kb on - strand at 1559.359 kb on - strand at 1559.391 kb on + strand at 1559.391 kb on + strand at 1559.391 kb on + strand at 1559.419 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3 remove 1,556,990 + MIT1002_01412 0.65 -0.2 1,557,015 + MIT1002_01412 0.68 -0.5 1,557,084 - MIT1002_01412 0.75 -1.9 1,557,084 - MIT1002_01412 0.75 -1.6 1,557,108 - MIT1002_01412 0.77 +1.3 1,557,124 + MIT1002_01412 0.79 -1.4 1,557,132 - MIT1002_01412 0.80 +0.3 1,557,132 - MIT1002_01412 0.80 -0.8 1,557,132 - MIT1002_01412 0.80 -1.5 1,557,170 + MIT1002_01412 0.83 +0.0 1,557,214 + MIT1002_01412 0.88 -0.2 1,557,246 + -1.8 1,557,287 + +1.0 1,557,328 - -0.3 1,557,401 + +0.8 1,557,401 + +1.1 1,557,502 - +0.0 1,557,599 + -2.9 1,557,687 - MIT1002_01413 0.14 -1.6 1,557,713 + MIT1002_01413 0.28 +0.4 1,557,734 - MIT1002_01413 0.39 +0.3 1,557,773 + MIT1002_01413 0.61 -1.4 1,557,797 + MIT1002_01413 0.74 +1.8 1,557,797 + MIT1002_01413 0.74 +1.1 1,557,968 - MIT1002_01414 0.12 -0.1 1,557,973 - MIT1002_01414 0.13 -1.4 1,558,006 - MIT1002_01414 0.18 +1.2 1,558,086 + MIT1002_01414 0.30 +1.6 1,558,148 - MIT1002_01414 0.39 +2.1 1,558,153 + MIT1002_01414 0.40 -1.2 1,558,251 + MIT1002_01414 0.55 +0.6 1,558,253 + MIT1002_01414 0.55 +0.8 1,558,254 - MIT1002_01414 0.55 -0.5 1,558,254 - MIT1002_01414 0.55 +0.8 1,558,259 - MIT1002_01414 0.56 +0.5 1,558,259 - MIT1002_01414 0.56 -1.8 1,558,376 + MIT1002_01414 0.74 -3.2 1,558,390 - MIT1002_01414 0.76 +2.1 1,558,393 + MIT1002_01414 0.77 +0.8 1,558,571 + +0.7 1,558,656 - MIT1002_01415 0.13 +2.9 1,558,693 + MIT1002_01415 0.19 +1.4 1,558,701 - MIT1002_01415 0.20 +1.0 1,558,709 - MIT1002_01415 0.21 -2.8 1,558,727 - MIT1002_01415 0.23 -2.2 1,558,780 + MIT1002_01415 0.31 -0.3 1,558,896 + MIT1002_01415 0.48 +0.1 1,558,914 - MIT1002_01415 0.50 -1.3 1,558,953 - MIT1002_01415 0.56 -0.7 1,558,962 + MIT1002_01415 0.57 -1.9 1,558,979 + MIT1002_01415 0.60 +0.4 1,558,982 + MIT1002_01415 0.60 +0.7 1,558,990 + MIT1002_01415 0.61 +1.2 1,559,194 + -1.5 1,559,264 - -1.1 1,559,339 + +0.9 1,559,349 - -0.2 1,559,359 - +0.1 1,559,391 + +1.5 1,559,391 + +1.0 1,559,391 + +0.1 1,559,419 - +1.1
Or see this region's nucleotide sequence