Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01200

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
1,320,048	+		MIT1002_01199	0.79	-3.2
1,320,140	+		MIT1002_01199	0.81	-3.0
1,320,140	+		MIT1002_01199	0.81	+0.2
1,320,148	-		MIT1002_01199	0.81	+0.7
1,320,247	-		MIT1002_01199	0.84	-1.7
1,320,318	+		MIT1002_01199	0.85	-0.2
1,320,344	-		MIT1002_01199	0.86	+1.7
1,320,436	+		MIT1002_01199	0.88	+0.9
1,320,436	+		MIT1002_01199	0.88	-1.0
1,320,436	+		MIT1002_01199	0.88	-0.1
1,320,444	-		MIT1002_01199	0.88	-1.6
1,320,444	-		MIT1002_01199	0.88	-0.6
1,320,444	-		MIT1002_01199	0.88	-1.4
1,320,444	-		MIT1002_01199	0.88	-0.2
1,320,444	-		MIT1002_01199	0.88	-0.0
1,320,444	-		MIT1002_01199	0.88	+2.1
1,320,454	-		MIT1002_01199	0.88	-0.6
1,320,467	+		MIT1002_01199	0.88	-0.6
1,320,477	-		MIT1002_01199	0.89	+1.0
1,320,519	-		MIT1002_01199	0.90	+0.6
1,320,519	-		MIT1002_01199	0.90	+0.8
1,320,556	+				-1.3
1,320,564	+				-0.3
1,320,617	+				+1.6
1,320,625	-				-0.7
1,320,637	+				+0.5
1,320,645	-				+0.3
1,320,645	-				-0.4
1,320,662	+				-2.6
1,320,662	+				+0.0
1,320,664	+				-1.1
1,320,685	+				-1.2
1,320,756	+				-0.6
1,320,773	+				+0.6
1,320,773	+				-2.3
1,320,774	-				+0.3
1,320,776	-				-0.5
1,320,781	-				-0.2
1,320,781	-				-0.4
1,320,810	+				+0.5
1,320,950	+				-0.5
1,321,033	-				+0.1
1,321,070	-				-0.0
1,321,124	-				+0.4
1,321,129	+				+0.5
1,321,237	-		MIT1002_01200	0.15	-1.2
1,321,296	-		MIT1002_01200	0.20	-0.1
1,321,370	+		MIT1002_01200	0.26	-0.3
1,321,454	-		MIT1002_01200	0.33	+0.2
1,321,456	+		MIT1002_01200	0.33	+0.1
1,321,483	+		MIT1002_01200	0.35	+0.3
1,321,496	-		MIT1002_01200	0.36	+0.1
1,321,571	+		MIT1002_01200	0.42	-1.0
1,321,571	+		MIT1002_01200	0.42	+0.4
1,321,576	+		MIT1002_01200	0.42	-0.8
1,321,579	-		MIT1002_01200	0.43	-0.6
1,321,609	+		MIT1002_01200	0.45	+1.9
1,321,699	+		MIT1002_01200	0.52	-0.6
1,321,729	+		MIT1002_01200	0.55	+0.7
1,321,731	+		MIT1002_01200	0.55	-0.5
1,321,731	+		MIT1002_01200	0.55	-1.7
1,321,731	+		MIT1002_01200	0.55	-2.2
1,321,731	+		MIT1002_01200	0.55	-2.9
1,321,731	+		MIT1002_01200	0.55	-0.4
1,321,731	+		MIT1002_01200	0.55	-2.3
1,321,739	-		MIT1002_01200	0.55	-1.3
1,321,739	-		MIT1002_01200	0.55	+1.0
1,321,764	+		MIT1002_01200	0.57	+0.7
1,321,765	+		MIT1002_01200	0.57	-1.2
1,321,860	+		MIT1002_01200	0.65	-1.0
1,321,860	+		MIT1002_01200	0.65	-0.1
1,321,870	-		MIT1002_01200	0.66	-2.3
1,321,889	+		MIT1002_01200	0.67	+0.1
1,321,932	+		MIT1002_01200	0.71	-1.7
1,321,940	-		MIT1002_01200	0.71	+1.2
1,321,940	-		MIT1002_01200	0.71	+0.7
1,322,000	+		MIT1002_01200	0.76	+0.9
1,322,008	-		MIT1002_01200	0.77	+0.0
1,322,008	-		MIT1002_01200	0.77	+0.0
1,322,008	-		MIT1002_01200	0.77	+1.1
1,322,067	+		MIT1002_01200	0.81	+0.2
1,322,105	-		MIT1002_01200	0.84	+0.9
1,322,190	-				+0.0
1,322,193	-				-0.1
1,322,250	-				+0.6
1,322,265	+				+0.0
1,322,277	+				-2.3
1,322,284	+				-1.0
1,322,285	-				-0.8
1,322,296	+				-0.3
1,322,311	+				+1.1
1,322,311	+				+0.0
1,322,319	-				-2.6
1,322,393	+				-0.3
1,322,396	+				-1.2
1,322,517	+		MIT1002_01201	0.17	-0.1
1,322,527	-		MIT1002_01201	0.18	-0.7
1,322,623	+		MIT1002_01201	0.27	-0.1
1,322,645	+		MIT1002_01201	0.29	+0.8
1,322,662	+		MIT1002_01201	0.31	-1.4
1,322,671	+		MIT1002_01201	0.32	+0.6
1,322,695	+		MIT1002_01201	0.34	-1.9
1,322,771	+		MIT1002_01201	0.41	+0.3
1,322,772	-		MIT1002_01201	0.42	-0.8
1,322,832	-		MIT1002_01201	0.47	+0.5
1,322,840	-		MIT1002_01201	0.48	-1.7
1,322,842	-		MIT1002_01201	0.48	-0.5
1,322,844	-		MIT1002_01201	0.48	-2.2
1,322,846	+		MIT1002_01201	0.49	+1.5
1,322,846	+		MIT1002_01201	0.49	-0.5
1,322,846	+		MIT1002_01201	0.49	-0.8
1,322,846	+		MIT1002_01201	0.49	+0.9
1,322,854	-		MIT1002_01201	0.49	+2.9
1,322,854	-		MIT1002_01201	0.49	-0.6
1,322,854	-		MIT1002_01201	0.49	+0.9
1,322,854	-		MIT1002_01201	0.49	-2.5
1,322,854	-		MIT1002_01201	0.49	-0.2
1,322,854	-		MIT1002_01201	0.49	-4.3
1,322,883	+		MIT1002_01201	0.52	+0.2
1,322,886	-		MIT1002_01201	0.52	-2.8
1,322,893	+		MIT1002_01201	0.53	+0.5
1,322,925	-		MIT1002_01201	0.56	+0.2
1,323,021	+		MIT1002_01201	0.65	-0.8
1,323,126	+		MIT1002_01201	0.75	+0.4
1,323,134	-		MIT1002_01201	0.76	-0.9
1,323,144	-		MIT1002_01201	0.77	+0.5
1,323,144	-		MIT1002_01201	0.77	+0.3
1,323,155	+		MIT1002_01201	0.78	-0.2
1,323,156	+		MIT1002_01201	0.78	+0.9
1,323,166	+		MIT1002_01201	0.79	-3.0
1,323,166	+		MIT1002_01201	0.79	-0.1
1,323,216	-		MIT1002_01201	0.84	+0.6
1,323,226	-		MIT1002_01201	0.85	+0.3
1,323,228	-		MIT1002_01201	0.85	+0.6
1,323,232	+		MIT1002_01201	0.85	-0.1
1,323,232	+		MIT1002_01201	0.85	-1.1
1,323,232	+		MIT1002_01201	0.85	-0.8
1,323,232	+		MIT1002_01201	0.85	+2.0
1,323,232	+		MIT1002_01201	0.85	+1.6
1,323,240	-		MIT1002_01201	0.86	-0.6
1,323,240	-		MIT1002_01201	0.86	+0.5
1,323,257	+		MIT1002_01201	0.88	+0.1
1,323,286	+				-1.8