Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01124

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
1,235,142	+		MIT1002_01123	0.64	-1.2
1,235,161	-		MIT1002_01123	0.64	+0.0
1,235,186	+		MIT1002_01123	0.65	-1.2
1,235,282	+		MIT1002_01123	0.69	-1.4
1,235,390	-		MIT1002_01123	0.74	-0.8
1,235,447	+		MIT1002_01123	0.76	+2.2
1,235,447	-		MIT1002_01123	0.76	-1.4
1,235,448	+		MIT1002_01123	0.76	-0.9
1,235,455	-		MIT1002_01123	0.77	+0.8
1,235,456	-		MIT1002_01123	0.77	+1.9
1,235,456	-		MIT1002_01123	0.77	-3.2
1,235,456	-		MIT1002_01123	0.77	+1.1
1,235,496	+		MIT1002_01123	0.78	-0.7
1,235,504	-		MIT1002_01123	0.79	-2.2
1,235,622	+		MIT1002_01123	0.83	-1.2
1,235,716	+		MIT1002_01123	0.87	+0.5
1,235,771	-		MIT1002_01123	0.90	-1.4
1,235,822	+				-0.5
1,235,835	+				+0.1
1,235,870	+				-0.0
1,235,908	+				-0.4
1,235,953	-				+2.6
1,235,993	+				-1.9
1,236,001	-				-1.8
1,236,008	+				+0.1
1,236,016	-				+1.1
1,236,016	-				+0.2
1,236,105	-				+1.3
1,236,112	-				+0.8
1,236,183	+		MIT1002_01124	0.15	+0.3
1,236,216	-		MIT1002_01124	0.21	+1.6
1,236,235	-		MIT1002_01124	0.24	-1.4
1,236,415	-		MIT1002_01124	0.55	-1.0
1,236,435	+		MIT1002_01124	0.59	-0.5
1,236,452	+		MIT1002_01124	0.62	+0.1
1,236,454	+		MIT1002_01124	0.62	+1.5
1,236,454	+		MIT1002_01124	0.62	+1.0
1,236,454	+		MIT1002_01124	0.62	-0.4
1,236,454	+		MIT1002_01124	0.62	+0.4
1,236,462	-		MIT1002_01124	0.64	-2.5
1,236,468	+		MIT1002_01124	0.65	-0.0
1,236,506	+		MIT1002_01124	0.71	+1.4
1,236,506	+		MIT1002_01124	0.71	+1.7
1,236,506	+		MIT1002_01124	0.71	+2.4
1,236,506	+		MIT1002_01124	0.71	+1.1
1,236,506	+		MIT1002_01124	0.71	-1.0
1,236,506	+		MIT1002_01124	0.71	+0.5
1,236,511	+		MIT1002_01124	0.72	-0.9
1,236,519	-		MIT1002_01124	0.73	+0.2
1,236,519	-		MIT1002_01124	0.73	+0.9
1,236,519	-		MIT1002_01124	0.73	-2.6
1,236,521	+		MIT1002_01124	0.74	-0.6
1,236,545	-		MIT1002_01124	0.78	+0.5
1,236,549	+		MIT1002_01124	0.79	+0.6
1,236,725	+				+0.1
1,236,725	+				+0.5
1,236,757	+				-1.2
1,236,828	-				-1.8
1,236,829	-				-1.0
1,236,845	+				+1.9
1,236,883	+				-1.2
1,236,891	-				-0.4
1,236,928	-				+1.3
1,236,938	+				-2.5
1,236,946	-				-0.8
1,237,003	+				+2.2
1,237,019	+				+1.0
1,237,019	+				-0.9
1,237,020	+				+1.6
1,237,157	+		MIT1002_01125	0.12	-2.2
1,237,157	+		MIT1002_01125	0.12	+0.6
1,237,182	-		MIT1002_01125	0.14	+0.2
1,237,186	-		MIT1002_01125	0.14	-3.2
1,237,216	-		MIT1002_01125	0.15	-0.1
1,237,247	-		MIT1002_01125	0.17	+0.0
1,237,318	+		MIT1002_01125	0.20	-3.1
1,237,326	-		MIT1002_01125	0.21	+0.4
1,237,326	-		MIT1002_01125	0.21	-1.0
1,237,416	+		MIT1002_01125	0.25	-1.1
1,237,498	+		MIT1002_01125	0.29	-2.1
1,237,511	-		MIT1002_01125	0.29	-0.5
1,237,528	+		MIT1002_01125	0.30	+0.7
1,237,534	-		MIT1002_01125	0.31	+1.1
1,237,536	-		MIT1002_01125	0.31	-2.6
1,237,536	-		MIT1002_01125	0.31	-0.9
1,237,536	-		MIT1002_01125	0.31	+0.6
1,237,536	-		MIT1002_01125	0.31	-3.3
1,237,536	-		MIT1002_01125	0.31	-3.0
1,237,637	+		MIT1002_01125	0.36	+0.2