Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00903

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00902 and MIT1002_00903 are separated by 192 nucleotidesMIT1002_00903 and MIT1002_00904 are separated by 105 nucleotides MIT1002_00902: MIT1002_00902 - Imidazolonepropionase, at 997,664 to 998,923 _00902 MIT1002_00903: MIT1002_00903 - putative HTH-type transcriptional regulator YurK, at 999,116 to 999,940 _00903 MIT1002_00904: MIT1002_00904 - Urocanate hydratase, at 1,000,046 to 1,001,785 _00904 Position (kb) 999 1000Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 998.179 kb on + strand, within MIT1002_00902at 998.182 kb on + strand, within MIT1002_00902at 998.187 kb on - strand, within MIT1002_00902at 998.187 kb on - strand, within MIT1002_00902at 998.190 kb on - strand, within MIT1002_00902at 998.190 kb on - strand, within MIT1002_00902at 998.190 kb on - strand, within MIT1002_00902at 998.195 kb on - strand, within MIT1002_00902at 998.348 kb on - strand, within MIT1002_00902at 998.392 kb on + strand, within MIT1002_00902at 998.392 kb on + strand, within MIT1002_00902at 998.392 kb on + strand, within MIT1002_00902at 998.392 kb on + strand, within MIT1002_00902at 998.441 kb on - strand, within MIT1002_00902at 998.469 kb on + strand, within MIT1002_00902at 998.512 kb on - strand, within MIT1002_00902at 998.522 kb on - strand, within MIT1002_00902at 998.536 kb on - strand, within MIT1002_00902at 998.593 kb on + strand, within MIT1002_00902at 998.659 kb on - strand, within MIT1002_00902at 998.659 kb on - strand, within MIT1002_00902at 998.743 kb on + strand, within MIT1002_00902at 998.751 kb on + strand, within MIT1002_00902at 998.759 kb on - strand, within MIT1002_00902at 998.759 kb on - strand, within MIT1002_00902at 998.759 kb on - strand, within MIT1002_00902at 998.759 kb on - strand, within MIT1002_00902at 998.759 kb on - strand, within MIT1002_00902at 998.761 kb on + strand, within MIT1002_00902at 998.773 kb on + strand, within MIT1002_00902at 998.850 kb on - strandat 998.858 kb on - strandat 998.858 kb on - strandat 998.881 kb on - strandat 998.912 kb on + strandat 998.920 kb on - strandat 998.927 kb on - strandat 998.927 kb on - strandat 998.929 kb on + strandat 998.942 kb on - strandat 998.996 kb on - strandat 999.130 kb on - strandat 999.130 kb on - strandat 999.130 kb on - strandat 999.135 kb on - strandat 999.135 kb on - strandat 999.198 kb on - strandat 999.228 kb on + strand, within MIT1002_00903at 999.261 kb on + strand, within MIT1002_00903at 999.300 kb on - strand, within MIT1002_00903at 999.312 kb on - strand, within MIT1002_00903at 999.336 kb on + strand, within MIT1002_00903at 999.336 kb on + strand, within MIT1002_00903at 999.369 kb on + strand, within MIT1002_00903at 999.377 kb on - strand, within MIT1002_00903at 999.388 kb on + strand, within MIT1002_00903at 999.491 kb on + strand, within MIT1002_00903at 999.491 kb on + strand, within MIT1002_00903at 999.491 kb on + strand, within MIT1002_00903at 999.499 kb on - strand, within MIT1002_00903at 999.499 kb on - strand, within MIT1002_00903at 999.499 kb on - strand, within MIT1002_00903at 999.515 kb on + strand, within MIT1002_00903at 999.538 kb on + strand, within MIT1002_00903at 999.538 kb on + strand, within MIT1002_00903at 999.546 kb on - strand, within MIT1002_00903at 999.546 kb on - strand, within MIT1002_00903at 999.546 kb on - strand, within MIT1002_00903at 999.546 kb on - strand, within MIT1002_00903at 999.546 kb on - strand, within MIT1002_00903at 999.632 kb on + strand, within MIT1002_00903at 999.632 kb on + strand, within MIT1002_00903at 999.640 kb on - strand, within MIT1002_00903at 999.676 kb on - strand, within MIT1002_00903at 999.683 kb on + strand, within MIT1002_00903at 999.693 kb on + strand, within MIT1002_00903at 999.732 kb on + strand, within MIT1002_00903at 999.740 kb on - strand, within MIT1002_00903at 999.779 kb on - strand, within MIT1002_00903at 999.804 kb on - strand, within MIT1002_00903at 999.813 kb on + strand, within MIT1002_00903at 999.820 kb on + strand, within MIT1002_00903at 999.837 kb on - strand, within MIT1002_00903at 999.880 kb on - strandat 999.880 kb on - strandat 999.887 kb on + strandat 999.887 kb on + strandat 999.887 kb on + strandat 999.887 kb on + strandat 999.895 kb on - strandat 999.895 kb on - strandat 999.895 kb on - strandat 999.895 kb on - strandat 999.896 kb on + strandat 999.900 kb on - strandat 999.900 kb on - strandat 999.900 kb on - strandat 999.905 kb on + strandat 1000.061 kb on - strandat 1000.190 kb on - strandat 1000.207 kb on - strandat 1000.214 kb on + strandat 1000.222 kb on - strand, within MIT1002_00904at 1000.269 kb on - strand, within MIT1002_00904at 1000.354 kb on + strand, within MIT1002_00904at 1000.359 kb on + strand, within MIT1002_00904at 1000.361 kb on - strand, within MIT1002_00904at 1000.362 kb on - strand, within MIT1002_00904at 1000.390 kb on + strand, within MIT1002_00904at 1000.390 kb on + strand, within MIT1002_00904at 1000.390 kb on + strand, within MIT1002_00904at 1000.398 kb on - strand, within MIT1002_00904at 1000.402 kb on + strand, within MIT1002_00904at 1000.420 kb on - strand, within MIT1002_00904at 1000.452 kb on - strand, within MIT1002_00904at 1000.470 kb on + strand, within MIT1002_00904at 1000.475 kb on + strand, within MIT1002_00904at 1000.478 kb on - strand, within MIT1002_00904at 1000.493 kb on + strand, within MIT1002_00904at 1000.573 kb on + strand, within MIT1002_00904at 1000.576 kb on - strand, within MIT1002_00904at 1000.580 kb on + strand, within MIT1002_00904at 1000.581 kb on - strand, within MIT1002_00904at 1000.585 kb on + strand, within MIT1002_00904at 1000.586 kb on - strand, within MIT1002_00904at 1000.593 kb on - strand, within MIT1002_00904at 1000.598 kb on + strand, within MIT1002_00904at 1000.620 kb on + strand, within MIT1002_00904at 1000.780 kb on - strand, within MIT1002_00904at 1000.802 kb on + strand, within MIT1002_00904at 1000.826 kb on + strand, within MIT1002_00904at 1000.908 kb on - strand, within MIT1002_00904at 1000.924 kb on + strand, within MIT1002_00904at 1000.932 kb on + strand, within MIT1002_00904at 1000.940 kb on - strand, within MIT1002_00904

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
remove
998,179 + MIT1002_00902 0.41 -0.3
998,182 + MIT1002_00902 0.41 -0.2
998,187 - MIT1002_00902 0.42 +1.2
998,187 - MIT1002_00902 0.42 +0.2
998,190 - MIT1002_00902 0.42 +0.8
998,190 - MIT1002_00902 0.42 -2.0
998,190 - MIT1002_00902 0.42 -0.3
998,195 - MIT1002_00902 0.42 -0.4
998,348 - MIT1002_00902 0.54 +0.2
998,392 + MIT1002_00902 0.58 -1.0
998,392 + MIT1002_00902 0.58 +0.5
998,392 + MIT1002_00902 0.58 +0.8
998,392 + MIT1002_00902 0.58 +0.2
998,441 - MIT1002_00902 0.62 +0.4
998,469 + MIT1002_00902 0.64 -3.2
998,512 - MIT1002_00902 0.67 -0.8
998,522 - MIT1002_00902 0.68 -0.7
998,536 - MIT1002_00902 0.69 +0.2
998,593 + MIT1002_00902 0.74 -1.1
998,659 - MIT1002_00902 0.79 -0.7
998,659 - MIT1002_00902 0.79 +0.4
998,743 + MIT1002_00902 0.86 -0.0
998,751 + MIT1002_00902 0.86 +0.2
998,759 - MIT1002_00902 0.87 +0.6
998,759 - MIT1002_00902 0.87 +1.2
998,759 - MIT1002_00902 0.87 -1.3
998,759 - MIT1002_00902 0.87 +0.1
998,759 - MIT1002_00902 0.87 -2.5
998,761 + MIT1002_00902 0.87 -0.5
998,773 + MIT1002_00902 0.88 -1.4
998,850 - +0.2
998,858 - -0.6
998,858 - +0.1
998,881 - +0.7
998,912 + -0.5
998,920 - +2.0
998,927 - -2.8
998,927 - -0.2
998,929 + -0.2
998,942 - +0.4
998,996 - -2.9
999,130 - +0.8
999,130 - +0.2
999,130 - +0.3
999,135 - +2.1
999,135 - +0.1
999,198 - -0.3
999,228 + MIT1002_00903 0.14 +0.5
999,261 + MIT1002_00903 0.18 +0.4
999,300 - MIT1002_00903 0.22 +0.5
999,312 - MIT1002_00903 0.24 +0.0
999,336 + MIT1002_00903 0.27 -1.5
999,336 + MIT1002_00903 0.27 -1.2
999,369 + MIT1002_00903 0.31 +0.4
999,377 - MIT1002_00903 0.32 -3.2
999,388 + MIT1002_00903 0.33 -1.7
999,491 + MIT1002_00903 0.45 +1.9
999,491 + MIT1002_00903 0.45 -0.5
999,491 + MIT1002_00903 0.45 +0.3
999,499 - MIT1002_00903 0.46 -1.4
999,499 - MIT1002_00903 0.46 -0.7
999,499 - MIT1002_00903 0.46 -1.8
999,515 + MIT1002_00903 0.48 -1.4
999,538 + MIT1002_00903 0.51 -1.0
999,538 + MIT1002_00903 0.51 -3.7
999,546 - MIT1002_00903 0.52 -0.7
999,546 - MIT1002_00903 0.52 +1.4
999,546 - MIT1002_00903 0.52 +0.8
999,546 - MIT1002_00903 0.52 -0.4
999,546 - MIT1002_00903 0.52 -1.3
999,632 + MIT1002_00903 0.63 -0.0
999,632 + MIT1002_00903 0.63 +0.1
999,640 - MIT1002_00903 0.64 -1.4
999,676 - MIT1002_00903 0.68 +0.8
999,683 + MIT1002_00903 0.69 -1.1
999,693 + MIT1002_00903 0.70 -0.2
999,732 + MIT1002_00903 0.75 -1.5
999,740 - MIT1002_00903 0.76 +0.8
999,779 - MIT1002_00903 0.80 -2.5
999,804 - MIT1002_00903 0.83 -1.7
999,813 + MIT1002_00903 0.84 +0.1
999,820 + MIT1002_00903 0.85 -0.4
999,837 - MIT1002_00903 0.87 -2.6
999,880 - -2.6
999,880 - -0.3
999,887 + -0.9
999,887 + -1.0
999,887 + -1.0
999,887 + -1.0
999,895 - -1.5
999,895 - -0.8
999,895 - -2.6
999,895 - -1.4
999,896 + +0.6
999,900 - +1.1
999,900 - +2.2
999,900 - +2.3
999,905 + -1.6
1,000,061 - -0.2
1,000,190 - -3.4
1,000,207 - -0.7
1,000,214 + -0.5
1,000,222 - MIT1002_00904 0.10 +0.5
1,000,269 - MIT1002_00904 0.13 +1.4
1,000,354 + MIT1002_00904 0.18 -1.7
1,000,359 + MIT1002_00904 0.18 -0.3
1,000,361 - MIT1002_00904 0.18 +0.4
1,000,362 - MIT1002_00904 0.18 -0.6
1,000,390 + MIT1002_00904 0.20 -0.1
1,000,390 + MIT1002_00904 0.20 -0.7
1,000,390 + MIT1002_00904 0.20 +0.2
1,000,398 - MIT1002_00904 0.20 +1.2
1,000,402 + MIT1002_00904 0.20 -0.5
1,000,420 - MIT1002_00904 0.21 -0.7
1,000,452 - MIT1002_00904 0.23 -0.1
1,000,470 + MIT1002_00904 0.24 +0.4
1,000,475 + MIT1002_00904 0.25 +0.1
1,000,478 - MIT1002_00904 0.25 -0.5
1,000,493 + MIT1002_00904 0.26 -1.3
1,000,573 + MIT1002_00904 0.30 -0.7
1,000,576 - MIT1002_00904 0.30 +0.6
1,000,580 + MIT1002_00904 0.31 -0.4
1,000,581 - MIT1002_00904 0.31 -0.1
1,000,585 + MIT1002_00904 0.31 +0.4
1,000,586 - MIT1002_00904 0.31 +0.5
1,000,593 - MIT1002_00904 0.31 +0.1
1,000,598 + MIT1002_00904 0.32 -1.3
1,000,620 + MIT1002_00904 0.33 +0.8
1,000,780 - MIT1002_00904 0.42 -0.2
1,000,802 + MIT1002_00904 0.43 +1.9
1,000,826 + MIT1002_00904 0.45 +1.0
1,000,908 - MIT1002_00904 0.50 +0.0
1,000,924 + MIT1002_00904 0.50 -0.0
1,000,932 + MIT1002_00904 0.51 +0.5
1,000,940 - MIT1002_00904 0.51 -0.3

Or see this region's nucleotide sequence