Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00895

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00893 and MIT1002_00894 are separated by 322 nucleotidesMIT1002_00894 and MIT1002_00895 are separated by 125 nucleotidesMIT1002_00895 and MIT1002_00896 are separated by 209 nucleotides MIT1002_00893: MIT1002_00893 - IMPACT family member YigZ, at 984,058 to 984,660 _00893 MIT1002_00894: MIT1002_00894 - hypothetical protein, at 984,983 to 985,306 _00894 MIT1002_00895: MIT1002_00895 - Chemotaxis regulator BdlA, at 985,432 to 986,730 _00895 MIT1002_00896: MIT1002_00896 - hypothetical protein, at 986,940 to 988,232 _00896 Position (kb) 985 986 987Strain fitness (log2 ratio) -2 -1 0 1 2at 984.454 kb on + strand, within MIT1002_00893at 984.476 kb on + strand, within MIT1002_00893at 984.503 kb on + strand, within MIT1002_00893at 984.503 kb on + strand, within MIT1002_00893at 984.626 kb on + strandat 984.631 kb on + strandat 984.650 kb on + strandat 984.713 kb on - strandat 984.756 kb on + strandat 984.756 kb on + strandat 984.762 kb on + strandat 984.764 kb on - strandat 984.912 kb on - strandat 984.936 kb on - strandat 984.936 kb on - strandat 984.941 kb on + strandat 984.949 kb on - strandat 984.949 kb on - strandat 985.028 kb on + strand, within MIT1002_00894at 985.033 kb on - strand, within MIT1002_00894at 985.043 kb on + strand, within MIT1002_00894at 985.086 kb on + strand, within MIT1002_00894at 985.086 kb on + strand, within MIT1002_00894at 985.086 kb on + strand, within MIT1002_00894at 985.086 kb on + strand, within MIT1002_00894at 985.086 kb on + strand, within MIT1002_00894at 985.086 kb on + strand, within MIT1002_00894at 985.086 kb on + strand, within MIT1002_00894at 985.086 kb on + strand, within MIT1002_00894at 985.086 kb on + strand, within MIT1002_00894at 985.086 kb on + strand, within MIT1002_00894at 985.086 kb on + strand, within MIT1002_00894at 985.094 kb on - strand, within MIT1002_00894at 985.094 kb on - strand, within MIT1002_00894at 985.094 kb on - strand, within MIT1002_00894at 985.094 kb on - strand, within MIT1002_00894at 985.094 kb on - strand, within MIT1002_00894at 985.094 kb on - strand, within MIT1002_00894at 985.094 kb on - strand, within MIT1002_00894at 985.094 kb on - strand, within MIT1002_00894at 985.094 kb on - strand, within MIT1002_00894at 985.094 kb on - strand, within MIT1002_00894at 985.094 kb on - strand, within MIT1002_00894at 985.094 kb on - strand, within MIT1002_00894at 985.094 kb on - strand, within MIT1002_00894at 985.094 kb on - strand, within MIT1002_00894at 985.094 kb on - strand, within MIT1002_00894at 985.094 kb on - strand, within MIT1002_00894at 985.094 kb on - strand, within MIT1002_00894at 985.094 kb on - strand, within MIT1002_00894at 985.094 kb on - strand, within MIT1002_00894at 985.313 kb on + strandat 985.321 kb on - strandat 985.323 kb on + strandat 985.331 kb on - strandat 985.331 kb on - strandat 985.454 kb on + strandat 985.869 kb on + strand, within MIT1002_00895at 986.030 kb on + strand, within MIT1002_00895at 986.032 kb on + strand, within MIT1002_00895at 986.032 kb on + strand, within MIT1002_00895at 986.038 kb on - strand, within MIT1002_00895at 986.040 kb on - strand, within MIT1002_00895at 986.040 kb on - strand, within MIT1002_00895at 986.042 kb on + strand, within MIT1002_00895at 986.042 kb on + strand, within MIT1002_00895at 986.057 kb on + strand, within MIT1002_00895at 986.057 kb on + strand, within MIT1002_00895at 986.065 kb on - strand, within MIT1002_00895at 986.208 kb on - strand, within MIT1002_00895at 986.382 kb on + strand, within MIT1002_00895at 986.382 kb on + strand, within MIT1002_00895at 986.405 kb on - strand, within MIT1002_00895at 986.464 kb on + strand, within MIT1002_00895at 986.472 kb on - strand, within MIT1002_00895at 986.472 kb on - strand, within MIT1002_00895at 986.502 kb on + strand, within MIT1002_00895at 986.602 kb on - strandat 986.674 kb on + strandat 986.811 kb on - strandat 986.827 kb on + strandat 986.827 kb on + strandat 986.827 kb on + strandat 986.835 kb on - strandat 986.934 kb on - strandat 986.973 kb on + strandat 987.014 kb on - strandat 987.019 kb on - strandat 987.070 kb on + strand, within MIT1002_00896at 987.136 kb on + strand, within MIT1002_00896at 987.136 kb on + strand, within MIT1002_00896at 987.206 kb on + strand, within MIT1002_00896at 987.283 kb on - strand, within MIT1002_00896at 987.474 kb on + strand, within MIT1002_00896at 987.482 kb on + strand, within MIT1002_00896at 987.572 kb on - strand, within MIT1002_00896at 987.620 kb on - strand, within MIT1002_00896at 987.625 kb on + strand, within MIT1002_00896at 987.625 kb on + strand, within MIT1002_00896at 987.667 kb on - strand, within MIT1002_00896at 987.729 kb on - strand, within MIT1002_00896

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
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984,454 + MIT1002_00893 0.66 -1.2
984,476 + MIT1002_00893 0.69 -0.7
984,503 + MIT1002_00893 0.74 -0.3
984,503 + MIT1002_00893 0.74 +0.3
984,626 + -0.7
984,631 + +1.0
984,650 + +1.5
984,713 - +0.7
984,756 + -0.6
984,756 + +0.6
984,762 + +0.1
984,764 - +0.1
984,912 - +0.6
984,936 - -0.5
984,936 - +1.8
984,941 + -2.6
984,949 - -0.7
984,949 - -1.3
985,028 + MIT1002_00894 0.14 -1.7
985,033 - MIT1002_00894 0.15 +1.2
985,043 + MIT1002_00894 0.19 -0.1
985,086 + MIT1002_00894 0.32 +0.3
985,086 + MIT1002_00894 0.32 -1.7
985,086 + MIT1002_00894 0.32 +0.2
985,086 + MIT1002_00894 0.32 -1.0
985,086 + MIT1002_00894 0.32 +0.0
985,086 + MIT1002_00894 0.32 -0.9
985,086 + MIT1002_00894 0.32 +0.2
985,086 + MIT1002_00894 0.32 +1.0
985,086 + MIT1002_00894 0.32 +1.2
985,086 + MIT1002_00894 0.32 +0.1
985,086 + MIT1002_00894 0.32 -0.0
985,094 - MIT1002_00894 0.34 -2.4
985,094 - MIT1002_00894 0.34 +0.5
985,094 - MIT1002_00894 0.34 -1.0
985,094 - MIT1002_00894 0.34 -1.4
985,094 - MIT1002_00894 0.34 -0.0
985,094 - MIT1002_00894 0.34 +1.5
985,094 - MIT1002_00894 0.34 +0.1
985,094 - MIT1002_00894 0.34 +2.4
985,094 - MIT1002_00894 0.34 +0.7
985,094 - MIT1002_00894 0.34 +0.2
985,094 - MIT1002_00894 0.34 -1.7
985,094 - MIT1002_00894 0.34 +0.3
985,094 - MIT1002_00894 0.34 +0.1
985,094 - MIT1002_00894 0.34 +0.5
985,094 - MIT1002_00894 0.34 +0.5
985,094 - MIT1002_00894 0.34 -0.7
985,094 - MIT1002_00894 0.34 -0.9
985,094 - MIT1002_00894 0.34 +0.0
985,094 - MIT1002_00894 0.34 +0.1
985,313 + -1.7
985,321 - -1.2
985,323 + -2.0
985,331 - +0.7
985,331 - -0.1
985,454 + +0.1
985,869 + MIT1002_00895 0.34 -1.3
986,030 + MIT1002_00895 0.46 +0.0
986,032 + MIT1002_00895 0.46 +1.0
986,032 + MIT1002_00895 0.46 -1.2
986,038 - MIT1002_00895 0.47 -0.7
986,040 - MIT1002_00895 0.47 +0.3
986,040 - MIT1002_00895 0.47 +0.4
986,042 + MIT1002_00895 0.47 +0.9
986,042 + MIT1002_00895 0.47 -2.4
986,057 + MIT1002_00895 0.48 +0.2
986,057 + MIT1002_00895 0.48 -0.5
986,065 - MIT1002_00895 0.49 +0.8
986,208 - MIT1002_00895 0.60 -0.2
986,382 + MIT1002_00895 0.73 -0.4
986,382 + MIT1002_00895 0.73 +2.2
986,405 - MIT1002_00895 0.75 -1.7
986,464 + MIT1002_00895 0.79 -0.8
986,472 - MIT1002_00895 0.80 -1.7
986,472 - MIT1002_00895 0.80 -1.9
986,502 + MIT1002_00895 0.82 +0.4
986,602 - -2.2
986,674 + +0.4
986,811 - -2.2
986,827 + +1.6
986,827 + +0.5
986,827 + -1.1
986,835 - +1.1
986,934 - +0.2
986,973 + -0.6
987,014 - +1.0
987,019 - +0.7
987,070 + MIT1002_00896 0.10 +2.5
987,136 + MIT1002_00896 0.15 -1.9
987,136 + MIT1002_00896 0.15 -0.2
987,206 + MIT1002_00896 0.21 +0.2
987,283 - MIT1002_00896 0.27 -0.6
987,474 + MIT1002_00896 0.41 +0.7
987,482 + MIT1002_00896 0.42 +0.1
987,572 - MIT1002_00896 0.49 -2.1
987,620 - MIT1002_00896 0.53 +0.0
987,625 + MIT1002_00896 0.53 +0.4
987,625 + MIT1002_00896 0.53 +0.6
987,667 - MIT1002_00896 0.56 -0.6
987,729 - MIT1002_00896 0.61 -1.2

Or see this region's nucleotide sequence