Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00856 and MIT1002_00857 overlap by 4 nucleotides MIT1002_00857 and MIT1002_00858 are separated by 336 nucleotides MIT1002_00858 and MIT1002_00859 are separated by 72 nucleotides
MIT1002_00856: MIT1002_00856 - Autoinducer 2 sensor kinase/phosphatase LuxQ, at 938,152 to 941,031
_00856
MIT1002_00857: MIT1002_00857 - leucine ABC transporter subunit substrate-binding protein LivK, at 941,028 to 942,206
_00857
MIT1002_00858: MIT1002_00858 - Exonuclease, at 942,543 to 943,040
_00858
MIT1002_00859: MIT1002_00859 - hypothetical protein, at 943,113 to 943,583
_00859
Position (kb) 941
942
943 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 940.069 kb on - strand, within MIT1002_00856 at 940.128 kb on + strand, within MIT1002_00856 at 940.199 kb on - strand, within MIT1002_00856 at 940.222 kb on - strand, within MIT1002_00856 at 940.257 kb on - strand, within MIT1002_00856 at 940.272 kb on - strand, within MIT1002_00856 at 940.304 kb on + strand, within MIT1002_00856 at 940.314 kb on + strand, within MIT1002_00856 at 940.314 kb on + strand, within MIT1002_00856 at 940.322 kb on - strand, within MIT1002_00856 at 940.330 kb on + strand, within MIT1002_00856 at 940.332 kb on - strand, within MIT1002_00856 at 940.397 kb on - strand, within MIT1002_00856 at 940.421 kb on + strand, within MIT1002_00856 at 940.421 kb on + strand, within MIT1002_00856 at 940.424 kb on - strand, within MIT1002_00856 at 940.431 kb on + strand, within MIT1002_00856 at 940.447 kb on - strand, within MIT1002_00856 at 940.447 kb on - strand, within MIT1002_00856 at 940.470 kb on + strand, within MIT1002_00856 at 940.470 kb on + strand, within MIT1002_00856 at 940.470 kb on + strand, within MIT1002_00856 at 940.470 kb on + strand, within MIT1002_00856 at 940.470 kb on + strand, within MIT1002_00856 at 940.474 kb on + strand, within MIT1002_00856 at 940.474 kb on + strand, within MIT1002_00856 at 940.478 kb on - strand, within MIT1002_00856 at 940.478 kb on - strand, within MIT1002_00856 at 940.478 kb on - strand, within MIT1002_00856 at 940.478 kb on - strand, within MIT1002_00856 at 940.478 kb on - strand, within MIT1002_00856 at 940.495 kb on - strand, within MIT1002_00856 at 940.502 kb on - strand, within MIT1002_00856 at 940.521 kb on - strand, within MIT1002_00856 at 940.538 kb on + strand, within MIT1002_00856 at 940.538 kb on + strand, within MIT1002_00856 at 940.546 kb on - strand, within MIT1002_00856 at 940.546 kb on - strand, within MIT1002_00856 at 940.584 kb on - strand, within MIT1002_00856 at 940.584 kb on - strand, within MIT1002_00856 at 940.586 kb on + strand, within MIT1002_00856 at 940.605 kb on + strand, within MIT1002_00856 at 940.605 kb on + strand, within MIT1002_00856 at 940.613 kb on - strand, within MIT1002_00856 at 940.613 kb on - strand, within MIT1002_00856 at 940.613 kb on - strand, within MIT1002_00856 at 940.631 kb on + strand, within MIT1002_00856 at 940.631 kb on + strand, within MIT1002_00856 at 940.631 kb on + strand, within MIT1002_00856 at 940.631 kb on + strand, within MIT1002_00856 at 940.639 kb on - strand, within MIT1002_00856 at 940.639 kb on - strand, within MIT1002_00856 at 940.819 kb on + strand at 940.830 kb on + strand at 940.830 kb on + strand at 940.830 kb on + strand at 940.830 kb on + strand at 940.830 kb on + strand at 940.838 kb on - strand at 940.838 kb on - strand at 940.972 kb on - strand at 941.019 kb on - strand at 941.020 kb on - strand at 941.102 kb on + strand at 941.128 kb on + strand at 941.131 kb on + strand at 941.136 kb on - strand at 941.139 kb on - strand at 941.139 kb on - strand at 941.139 kb on - strand at 941.139 kb on - strand at 941.141 kb on + strand at 941.156 kb on - strand, within MIT1002_00857 at 941.169 kb on + strand, within MIT1002_00857 at 941.177 kb on - strand, within MIT1002_00857 at 941.177 kb on - strand, within MIT1002_00857 at 941.179 kb on - strand, within MIT1002_00857 at 941.195 kb on + strand, within MIT1002_00857 at 941.195 kb on + strand, within MIT1002_00857 at 941.275 kb on + strand, within MIT1002_00857 at 941.316 kb on - strand, within MIT1002_00857 at 941.395 kb on + strand, within MIT1002_00857 at 941.411 kb on + strand, within MIT1002_00857 at 941.440 kb on + strand, within MIT1002_00857 at 941.493 kb on + strand, within MIT1002_00857 at 941.506 kb on - strand, within MIT1002_00857 at 941.506 kb on - strand, within MIT1002_00857 at 941.573 kb on - strand, within MIT1002_00857 at 941.588 kb on - strand, within MIT1002_00857 at 941.614 kb on - strand, within MIT1002_00857 at 941.614 kb on - strand, within MIT1002_00857 at 941.670 kb on + strand, within MIT1002_00857 at 941.670 kb on + strand, within MIT1002_00857 at 941.670 kb on + strand, within MIT1002_00857 at 941.680 kb on + strand, within MIT1002_00857 at 941.688 kb on - strand, within MIT1002_00857 at 941.688 kb on - strand, within MIT1002_00857 at 941.858 kb on + strand, within MIT1002_00857 at 941.863 kb on + strand, within MIT1002_00857 at 941.880 kb on + strand, within MIT1002_00857 at 941.946 kb on + strand, within MIT1002_00857 at 941.946 kb on + strand, within MIT1002_00857 at 941.954 kb on - strand, within MIT1002_00857 at 941.956 kb on - strand, within MIT1002_00857 at 942.001 kb on - strand, within MIT1002_00857 at 942.045 kb on + strand, within MIT1002_00857 at 942.075 kb on + strand, within MIT1002_00857 at 942.084 kb on + strand, within MIT1002_00857 at 942.143 kb on - strand at 942.212 kb on - strand at 942.237 kb on - strand at 942.256 kb on + strand at 942.349 kb on - strand at 942.364 kb on + strand at 942.380 kb on + strand at 942.400 kb on + strand at 942.596 kb on - strand, within MIT1002_00858 at 942.610 kb on - strand, within MIT1002_00858 at 942.640 kb on + strand, within MIT1002_00858 at 942.715 kb on + strand, within MIT1002_00858 at 942.715 kb on + strand, within MIT1002_00858 at 942.718 kb on - strand, within MIT1002_00858 at 942.723 kb on - strand, within MIT1002_00858 at 942.728 kb on + strand, within MIT1002_00858 at 942.728 kb on - strand, within MIT1002_00858 at 942.728 kb on - strand, within MIT1002_00858 at 942.823 kb on + strand, within MIT1002_00858 at 942.837 kb on - strand, within MIT1002_00858 at 942.853 kb on - strand, within MIT1002_00858 at 942.880 kb on + strand, within MIT1002_00858 at 942.928 kb on + strand, within MIT1002_00858 at 943.100 kb on + strand at 943.103 kb on - strand at 943.194 kb on + strand, within MIT1002_00859 at 943.194 kb on + strand, within MIT1002_00859 at 943.202 kb on - strand, within MIT1002_00859 at 943.202 kb on - strand, within MIT1002_00859
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3 remove 940,069 - MIT1002_00856 0.67 +1.1 940,128 + MIT1002_00856 0.69 +1.2 940,199 - MIT1002_00856 0.71 +0.4 940,222 - MIT1002_00856 0.72 +1.2 940,257 - MIT1002_00856 0.73 -0.0 940,272 - MIT1002_00856 0.74 +1.4 940,304 + MIT1002_00856 0.75 +0.3 940,314 + MIT1002_00856 0.75 -0.0 940,314 + MIT1002_00856 0.75 +1.6 940,322 - MIT1002_00856 0.75 +0.5 940,330 + MIT1002_00856 0.76 -0.9 940,332 - MIT1002_00856 0.76 +2.2 940,397 - MIT1002_00856 0.78 -0.5 940,421 + MIT1002_00856 0.79 -0.4 940,421 + MIT1002_00856 0.79 +1.2 940,424 - MIT1002_00856 0.79 -0.6 940,431 + MIT1002_00856 0.79 +0.3 940,447 - MIT1002_00856 0.80 +1.5 940,447 - MIT1002_00856 0.80 +2.6 940,470 + MIT1002_00856 0.80 -1.7 940,470 + MIT1002_00856 0.80 +1.2 940,470 + MIT1002_00856 0.80 -0.8 940,470 + MIT1002_00856 0.80 +0.3 940,470 + MIT1002_00856 0.80 +0.4 940,474 + MIT1002_00856 0.81 -0.0 940,474 + MIT1002_00856 0.81 +1.0 940,478 - MIT1002_00856 0.81 +1.6 940,478 - MIT1002_00856 0.81 -0.4 940,478 - MIT1002_00856 0.81 +0.8 940,478 - MIT1002_00856 0.81 +0.2 940,478 - MIT1002_00856 0.81 -0.4 940,495 - MIT1002_00856 0.81 +0.1 940,502 - MIT1002_00856 0.82 +1.8 940,521 - MIT1002_00856 0.82 +0.2 940,538 + MIT1002_00856 0.83 +0.3 940,538 + MIT1002_00856 0.83 -2.4 940,546 - MIT1002_00856 0.83 -0.4 940,546 - MIT1002_00856 0.83 +0.1 940,584 - MIT1002_00856 0.84 +0.6 940,584 - MIT1002_00856 0.84 +0.6 940,586 + MIT1002_00856 0.85 +1.9 940,605 + MIT1002_00856 0.85 +0.0 940,605 + MIT1002_00856 0.85 +0.4 940,613 - MIT1002_00856 0.85 +0.7 940,613 - MIT1002_00856 0.85 +0.4 940,613 - MIT1002_00856 0.85 +0.6 940,631 + MIT1002_00856 0.86 +0.6 940,631 + MIT1002_00856 0.86 -0.9 940,631 + MIT1002_00856 0.86 -1.8 940,631 + MIT1002_00856 0.86 -2.9 940,639 - MIT1002_00856 0.86 +1.6 940,639 - MIT1002_00856 0.86 -0.2 940,819 + +1.3 940,830 + +2.0 940,830 + +0.3 940,830 + +2.9 940,830 + +0.1 940,830 + -0.5 940,838 - +0.2 940,838 - -0.1 940,972 - +2.7 941,019 - -2.7 941,020 - +1.4 941,102 + +1.4 941,128 + +0.7 941,131 + -1.4 941,136 - -0.4 941,139 - -0.5 941,139 - -1.4 941,139 - -0.6 941,139 - -2.1 941,141 + +2.0 941,156 - MIT1002_00857 0.11 -0.6 941,169 + MIT1002_00857 0.12 +0.7 941,177 - MIT1002_00857 0.13 +1.9 941,177 - MIT1002_00857 0.13 +0.9 941,179 - MIT1002_00857 0.13 -0.9 941,195 + MIT1002_00857 0.14 +2.2 941,195 + MIT1002_00857 0.14 -0.7 941,275 + MIT1002_00857 0.21 +0.8 941,316 - MIT1002_00857 0.24 -2.1 941,395 + MIT1002_00857 0.31 +1.3 941,411 + MIT1002_00857 0.32 -0.7 941,440 + MIT1002_00857 0.35 +0.5 941,493 + MIT1002_00857 0.39 +0.3 941,506 - MIT1002_00857 0.41 -0.6 941,506 - MIT1002_00857 0.41 -2.5 941,573 - MIT1002_00857 0.46 +0.6 941,588 - MIT1002_00857 0.47 +0.8 941,614 - MIT1002_00857 0.50 +1.4 941,614 - MIT1002_00857 0.50 -0.2 941,670 + MIT1002_00857 0.54 -1.5 941,670 + MIT1002_00857 0.54 -0.8 941,670 + MIT1002_00857 0.54 +0.5 941,680 + MIT1002_00857 0.55 +1.0 941,688 - MIT1002_00857 0.56 -0.4 941,688 - MIT1002_00857 0.56 +0.4 941,858 + MIT1002_00857 0.70 -0.6 941,863 + MIT1002_00857 0.71 +0.9 941,880 + MIT1002_00857 0.72 -1.5 941,946 + MIT1002_00857 0.78 +0.5 941,946 + MIT1002_00857 0.78 -3.3 941,954 - MIT1002_00857 0.79 +0.4 941,956 - MIT1002_00857 0.79 +0.2 942,001 - MIT1002_00857 0.83 +1.5 942,045 + MIT1002_00857 0.86 +0.9 942,075 + MIT1002_00857 0.89 +0.8 942,084 + MIT1002_00857 0.90 -1.2 942,143 - +1.5 942,212 - +1.1 942,237 - -0.3 942,256 + -2.1 942,349 - +1.3 942,364 + -0.9 942,380 + +0.6 942,400 + +1.8 942,596 - MIT1002_00858 0.11 +0.3 942,610 - MIT1002_00858 0.13 +1.2 942,640 + MIT1002_00858 0.19 +0.3 942,715 + MIT1002_00858 0.35 -0.7 942,715 + MIT1002_00858 0.35 +0.4 942,718 - MIT1002_00858 0.35 -0.7 942,723 - MIT1002_00858 0.36 +0.4 942,728 + MIT1002_00858 0.37 -1.0 942,728 - MIT1002_00858 0.37 +0.2 942,728 - MIT1002_00858 0.37 +1.3 942,823 + MIT1002_00858 0.56 +0.0 942,837 - MIT1002_00858 0.59 +1.6 942,853 - MIT1002_00858 0.62 +1.0 942,880 + MIT1002_00858 0.68 +0.7 942,928 + MIT1002_00858 0.77 -0.6 943,100 + +0.8 943,103 - -1.7 943,194 + MIT1002_00859 0.17 -1.2 943,194 + MIT1002_00859 0.17 -2.4 943,202 - MIT1002_00859 0.19 -2.6 943,202 - MIT1002_00859 0.19 +0.6
Or see this region's nucleotide sequence