Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00841 and MIT1002_00842 are separated by 419 nucleotides MIT1002_00842 and MIT1002_00843 are separated by 82 nucleotides MIT1002_00843 and MIT1002_00844 are separated by 255 nucleotides
MIT1002_00841: MIT1002_00841 - Serine endoprotease DegS precursor, at 921,336 to 922,406
_00841
MIT1002_00842: MIT1002_00842 - Periplasmic pH-dependent serine endoprotease DegQ precursor, at 922,826 to 924,193
_00842
MIT1002_00843: MIT1002_00843 - hypothetical protein, at 924,276 to 924,710
_00843
MIT1002_00844: MIT1002_00844 - AFG1-like ATPase, at 924,966 to 926,063
_00844
Position (kb) 922
923
924
925 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 922.238 kb on - strand, within MIT1002_00841 at 922.238 kb on - strand, within MIT1002_00841 at 922.463 kb on - strand at 922.523 kb on - strand at 922.588 kb on + strand at 922.588 kb on - strand at 922.588 kb on - strand at 922.588 kb on - strand at 922.596 kb on - strand at 922.607 kb on + strand at 922.698 kb on - strand at 922.701 kb on - strand at 922.751 kb on + strand at 922.769 kb on + strand at 922.775 kb on + strand at 922.777 kb on - strand at 922.825 kb on - strand at 922.864 kb on + strand at 922.894 kb on - strand at 922.894 kb on - strand at 922.894 kb on - strand at 922.916 kb on + strand at 922.916 kb on - strand at 922.918 kb on + strand at 922.926 kb on - strand at 922.943 kb on - strand at 923.017 kb on + strand, within MIT1002_00842 at 923.059 kb on + strand, within MIT1002_00842 at 923.059 kb on + strand, within MIT1002_00842 at 923.059 kb on + strand, within MIT1002_00842 at 923.059 kb on + strand, within MIT1002_00842 at 923.067 kb on - strand, within MIT1002_00842 at 923.069 kb on + strand, within MIT1002_00842 at 923.077 kb on - strand, within MIT1002_00842 at 923.092 kb on - strand, within MIT1002_00842 at 923.115 kb on - strand, within MIT1002_00842 at 923.215 kb on + strand, within MIT1002_00842 at 923.270 kb on + strand, within MIT1002_00842 at 923.467 kb on + strand, within MIT1002_00842 at 923.590 kb on - strand, within MIT1002_00842 at 923.596 kb on + strand, within MIT1002_00842 at 923.620 kb on - strand, within MIT1002_00842 at 923.627 kb on + strand, within MIT1002_00842 at 923.627 kb on + strand, within MIT1002_00842 at 923.635 kb on - strand, within MIT1002_00842 at 923.635 kb on - strand, within MIT1002_00842 at 923.644 kb on + strand, within MIT1002_00842 at 923.703 kb on + strand, within MIT1002_00842 at 923.711 kb on - strand, within MIT1002_00842 at 923.768 kb on - strand, within MIT1002_00842 at 923.961 kb on + strand, within MIT1002_00842 at 923.988 kb on + strand, within MIT1002_00842 at 923.988 kb on + strand, within MIT1002_00842 at 923.998 kb on + strand, within MIT1002_00842 at 923.998 kb on + strand, within MIT1002_00842 at 923.998 kb on + strand, within MIT1002_00842 at 923.998 kb on + strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.064 kb on + strand at 924.135 kb on - strand at 924.238 kb on + strand at 924.248 kb on + strand at 924.374 kb on - strand, within MIT1002_00843 at 924.381 kb on - strand, within MIT1002_00843 at 924.452 kb on + strand, within MIT1002_00843 at 924.460 kb on - strand, within MIT1002_00843 at 924.530 kb on + strand, within MIT1002_00843 at 924.530 kb on + strand, within MIT1002_00843 at 924.538 kb on - strand, within MIT1002_00843 at 924.539 kb on - strand, within MIT1002_00843 at 924.564 kb on - strand, within MIT1002_00843 at 924.608 kb on + strand, within MIT1002_00843 at 924.608 kb on + strand, within MIT1002_00843 at 924.608 kb on + strand, within MIT1002_00843 at 924.613 kb on + strand, within MIT1002_00843 at 924.627 kb on + strand, within MIT1002_00843 at 924.694 kb on + strand at 924.727 kb on + strand at 924.812 kb on - strand at 924.899 kb on - strand at 924.915 kb on + strand at 925.002 kb on - strand at 925.087 kb on - strand, within MIT1002_00844 at 925.150 kb on - strand, within MIT1002_00844 at 925.152 kb on - strand, within MIT1002_00844 at 925.157 kb on - strand, within MIT1002_00844
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3 remove 922,238 - MIT1002_00841 0.84 -1.5 922,238 - MIT1002_00841 0.84 -1.8 922,463 - -2.5 922,523 - +0.1 922,588 + -0.5 922,588 - -0.8 922,588 - +1.7 922,588 - +0.1 922,596 - -1.2 922,607 + -0.2 922,698 - +1.2 922,701 - -0.6 922,751 + -0.4 922,769 + +1.4 922,775 + +1.4 922,777 - -0.4 922,825 - -0.2 922,864 + -1.4 922,894 - -1.1 922,894 - -1.5 922,894 - -1.5 922,916 + -2.6 922,916 - -1.3 922,918 + +2.1 922,926 - -0.2 922,943 - -2.4 923,017 + MIT1002_00842 0.14 -2.1 923,059 + MIT1002_00842 0.17 -0.9 923,059 + MIT1002_00842 0.17 -0.8 923,059 + MIT1002_00842 0.17 -3.8 923,059 + MIT1002_00842 0.17 +0.2 923,067 - MIT1002_00842 0.18 -0.4 923,069 + MIT1002_00842 0.18 -3.3 923,077 - MIT1002_00842 0.18 -0.2 923,092 - MIT1002_00842 0.19 -1.0 923,115 - MIT1002_00842 0.21 -0.2 923,215 + MIT1002_00842 0.28 -1.3 923,270 + MIT1002_00842 0.32 +0.8 923,467 + MIT1002_00842 0.47 -2.6 923,590 - MIT1002_00842 0.56 -2.7 923,596 + MIT1002_00842 0.56 -0.1 923,620 - MIT1002_00842 0.58 +0.2 923,627 + MIT1002_00842 0.59 -0.9 923,627 + MIT1002_00842 0.59 +0.6 923,635 - MIT1002_00842 0.59 -2.3 923,635 - MIT1002_00842 0.59 -0.9 923,644 + MIT1002_00842 0.60 -0.8 923,703 + MIT1002_00842 0.64 -2.5 923,711 - MIT1002_00842 0.65 -0.9 923,768 - MIT1002_00842 0.69 +3.5 923,961 + MIT1002_00842 0.83 +1.4 923,988 + MIT1002_00842 0.85 -0.0 923,988 + MIT1002_00842 0.85 +0.9 923,998 + MIT1002_00842 0.86 -2.6 923,998 + MIT1002_00842 0.86 -1.2 923,998 + MIT1002_00842 0.86 +2.0 923,998 + MIT1002_00842 0.86 -1.8 924,006 - MIT1002_00842 0.86 +0.2 924,006 - MIT1002_00842 0.86 -1.6 924,006 - MIT1002_00842 0.86 +1.2 924,006 - MIT1002_00842 0.86 -0.0 924,006 - MIT1002_00842 0.86 -1.2 924,006 - MIT1002_00842 0.86 -3.7 924,006 - MIT1002_00842 0.86 -0.8 924,064 + +1.4 924,135 - +0.5 924,238 + +1.1 924,248 + -2.2 924,374 - MIT1002_00843 0.23 -4.2 924,381 - MIT1002_00843 0.24 -4.4 924,452 + MIT1002_00843 0.40 -4.7 924,460 - MIT1002_00843 0.42 -0.7 924,530 + MIT1002_00843 0.58 -2.3 924,530 + MIT1002_00843 0.58 -3.4 924,538 - MIT1002_00843 0.60 -4.7 924,539 - MIT1002_00843 0.60 -3.9 924,564 - MIT1002_00843 0.66 -2.4 924,608 + MIT1002_00843 0.76 -0.7 924,608 + MIT1002_00843 0.76 -4.1 924,608 + MIT1002_00843 0.76 -5.4 924,613 + MIT1002_00843 0.77 -1.7 924,627 + MIT1002_00843 0.81 -3.0 924,694 + -1.3 924,727 + -2.2 924,812 - +0.4 924,899 - -3.2 924,915 + +0.0 925,002 - -3.0 925,087 - MIT1002_00844 0.11 -2.9 925,150 - MIT1002_00844 0.17 -3.5 925,152 - MIT1002_00844 0.17 +1.2 925,157 - MIT1002_00844 0.17 -1.9
Or see this region's nucleotide sequence