Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00831 and MIT1002_00832 are separated by 0 nucleotides MIT1002_00832 and MIT1002_00833 are separated by 2 nucleotides MIT1002_00833 and MIT1002_00834 are separated by 848 nucleotides
MIT1002_00831: MIT1002_00831 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC, at 913,146 to 913,694
_00831
MIT1002_00832: MIT1002_00832 - Arabinose 5-phosphate isomerase KdsD, at 913,695 to 914,675
_00832
MIT1002_00833: MIT1002_00833 - Inner membrane protein YrbG, at 914,678 to 915,634
_00833
MIT1002_00834: MIT1002_00834 - putative ABC transporter ATP-binding protein, at 916,483 to 917,283
_00834
Position (kb) 914
915
916 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 914.751 kb on - strand at 914.842 kb on + strand, within MIT1002_00833 at 914.844 kb on - strand, within MIT1002_00833 at 914.904 kb on - strand, within MIT1002_00833 at 914.910 kb on + strand, within MIT1002_00833 at 914.918 kb on - strand, within MIT1002_00833 at 914.918 kb on - strand, within MIT1002_00833 at 914.918 kb on - strand, within MIT1002_00833 at 914.920 kb on + strand, within MIT1002_00833 at 914.928 kb on - strand, within MIT1002_00833 at 915.027 kb on + strand, within MIT1002_00833 at 915.093 kb on - strand, within MIT1002_00833 at 915.095 kb on + strand, within MIT1002_00833 at 915.095 kb on + strand, within MIT1002_00833 at 915.103 kb on - strand, within MIT1002_00833 at 915.103 kb on - strand, within MIT1002_00833 at 915.103 kb on - strand, within MIT1002_00833 at 915.103 kb on - strand, within MIT1002_00833 at 915.143 kb on - strand, within MIT1002_00833 at 915.270 kb on + strand, within MIT1002_00833 at 915.337 kb on - strand, within MIT1002_00833 at 915.365 kb on - strand, within MIT1002_00833 at 915.365 kb on - strand, within MIT1002_00833 at 915.769 kb on + strand at 915.775 kb on - strand at 915.845 kb on + strand at 915.845 kb on + strand at 916.251 kb on + strand at 916.251 kb on + strand at 916.251 kb on + strand at 916.251 kb on + strand at 916.251 kb on + strand at 916.259 kb on - strand at 916.259 kb on - strand at 916.259 kb on - strand at 916.259 kb on - strand at 916.259 kb on - strand at 916.355 kb on - strand at 916.358 kb on + strand at 916.388 kb on + strand at 916.444 kb on + strand at 916.481 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3 remove 914,751 - +1.1 914,842 + MIT1002_00833 0.17 -2.6 914,844 - MIT1002_00833 0.17 -0.5 914,904 - MIT1002_00833 0.24 -0.3 914,910 + MIT1002_00833 0.24 -2.3 914,918 - MIT1002_00833 0.25 -2.2 914,918 - MIT1002_00833 0.25 -2.8 914,918 - MIT1002_00833 0.25 -2.3 914,920 + MIT1002_00833 0.25 -0.4 914,928 - MIT1002_00833 0.26 +0.3 915,027 + MIT1002_00833 0.36 -3.4 915,093 - MIT1002_00833 0.43 -3.8 915,095 + MIT1002_00833 0.44 -2.3 915,095 + MIT1002_00833 0.44 -2.3 915,103 - MIT1002_00833 0.44 -3.1 915,103 - MIT1002_00833 0.44 -1.4 915,103 - MIT1002_00833 0.44 -2.3 915,103 - MIT1002_00833 0.44 -2.5 915,143 - MIT1002_00833 0.49 -3.2 915,270 + MIT1002_00833 0.62 -1.9 915,337 - MIT1002_00833 0.69 -3.7 915,365 - MIT1002_00833 0.72 -2.4 915,365 - MIT1002_00833 0.72 -2.9 915,769 + +0.8 915,775 - +1.1 915,845 + -1.9 915,845 + -0.7 916,251 + +0.7 916,251 + -0.2 916,251 + -1.7 916,251 + +0.9 916,251 + +0.2 916,259 - +0.2 916,259 - -3.1 916,259 - +0.5 916,259 - +1.4 916,259 - +1.8 916,355 - +0.9 916,358 + -0.2 916,388 + +2.5 916,444 + -1.6 916,481 + -1.7
Or see this region's nucleotide sequence