Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00764 and MIT1002_00765 are separated by 137 nucleotides MIT1002_00765 and MIT1002_00766 are separated by 112 nucleotides MIT1002_00766 and MIT1002_00767 are separated by 117 nucleotides
MIT1002_00764: MIT1002_00764 - Signal transduction histidine-protein kinase BarA, at 839,649 to 842,276
_00764
MIT1002_00765: MIT1002_00765 - Long-chain-fatty-acid--CoA ligase, at 842,414 to 843,982
_00765
MIT1002_00766: MIT1002_00766 - hypothetical protein, at 844,095 to 844,568
_00766
MIT1002_00767: MIT1002_00767 - Soluble aldose sugar dehydrogenase YliI precursor, at 844,686 to 845,912
_00767
Position (kb) 842
843
844 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 841.493 kb on + strand, within MIT1002_00764 at 841.494 kb on + strand, within MIT1002_00764 at 841.495 kb on + strand, within MIT1002_00764 at 841.495 kb on + strand, within MIT1002_00764 at 841.503 kb on - strand, within MIT1002_00764 at 841.503 kb on - strand, within MIT1002_00764 at 841.577 kb on + strand, within MIT1002_00764 at 841.577 kb on + strand, within MIT1002_00764 at 841.582 kb on - strand, within MIT1002_00764 at 841.584 kb on - strand, within MIT1002_00764 at 841.585 kb on - strand, within MIT1002_00764 at 841.585 kb on - strand, within MIT1002_00764 at 841.707 kb on + strand, within MIT1002_00764 at 841.817 kb on - strand, within MIT1002_00764 at 841.836 kb on + strand, within MIT1002_00764 at 841.896 kb on - strand, within MIT1002_00764 at 841.909 kb on + strand, within MIT1002_00764 at 841.909 kb on + strand, within MIT1002_00764 at 841.909 kb on + strand, within MIT1002_00764 at 841.909 kb on + strand, within MIT1002_00764 at 841.909 kb on + strand, within MIT1002_00764 at 841.909 kb on + strand, within MIT1002_00764 at 841.909 kb on + strand, within MIT1002_00764 at 841.909 kb on + strand, within MIT1002_00764 at 841.917 kb on - strand, within MIT1002_00764 at 841.917 kb on - strand, within MIT1002_00764 at 841.917 kb on - strand, within MIT1002_00764 at 841.917 kb on - strand, within MIT1002_00764 at 841.917 kb on - strand, within MIT1002_00764 at 841.917 kb on - strand, within MIT1002_00764 at 841.917 kb on - strand, within MIT1002_00764 at 841.917 kb on - strand, within MIT1002_00764 at 841.939 kb on - strand, within MIT1002_00764 at 841.965 kb on - strand, within MIT1002_00764 at 842.038 kb on - strand at 842.072 kb on + strand at 842.130 kb on + strand at 842.156 kb on + strand at 842.258 kb on - strand at 842.268 kb on - strand at 842.271 kb on + strand at 842.271 kb on + strand at 842.396 kb on + strand at 842.411 kb on + strand at 842.488 kb on + strand at 842.545 kb on - strand at 842.664 kb on - strand, within MIT1002_00765 at 842.704 kb on + strand, within MIT1002_00765 at 842.738 kb on - strand, within MIT1002_00765 at 842.777 kb on + strand, within MIT1002_00765 at 842.783 kb on + strand, within MIT1002_00765 at 842.825 kb on - strand, within MIT1002_00765 at 842.839 kb on - strand, within MIT1002_00765 at 842.839 kb on - strand, within MIT1002_00765 at 842.917 kb on + strand, within MIT1002_00765 at 842.993 kb on - strand, within MIT1002_00765 at 842.995 kb on + strand, within MIT1002_00765 at 843.004 kb on - strand, within MIT1002_00765 at 843.004 kb on - strand, within MIT1002_00765 at 843.009 kb on + strand, within MIT1002_00765 at 843.147 kb on + strand, within MIT1002_00765 at 843.147 kb on + strand, within MIT1002_00765 at 843.155 kb on - strand, within MIT1002_00765 at 843.155 kb on - strand, within MIT1002_00765 at 843.155 kb on - strand, within MIT1002_00765 at 843.263 kb on + strand, within MIT1002_00765 at 843.340 kb on + strand, within MIT1002_00765 at 843.389 kb on + strand, within MIT1002_00765 at 843.389 kb on + strand, within MIT1002_00765 at 843.397 kb on - strand, within MIT1002_00765 at 843.412 kb on + strand, within MIT1002_00765 at 843.412 kb on + strand, within MIT1002_00765 at 843.414 kb on - strand, within MIT1002_00765 at 843.423 kb on - strand, within MIT1002_00765 at 843.462 kb on + strand, within MIT1002_00765 at 843.462 kb on + strand, within MIT1002_00765 at 843.487 kb on + strand, within MIT1002_00765 at 843.487 kb on + strand, within MIT1002_00765 at 843.495 kb on - strand, within MIT1002_00765 at 843.495 kb on - strand, within MIT1002_00765 at 843.497 kb on - strand, within MIT1002_00765 at 843.497 kb on - strand, within MIT1002_00765 at 843.499 kb on - strand, within MIT1002_00765 at 843.502 kb on - strand, within MIT1002_00765 at 843.502 kb on - strand, within MIT1002_00765 at 843.546 kb on + strand, within MIT1002_00765 at 843.546 kb on + strand, within MIT1002_00765 at 843.546 kb on + strand, within MIT1002_00765 at 843.554 kb on - strand, within MIT1002_00765 at 843.567 kb on + strand, within MIT1002_00765 at 843.733 kb on - strand, within MIT1002_00765 at 843.737 kb on + strand, within MIT1002_00765 at 843.737 kb on + strand, within MIT1002_00765 at 843.742 kb on + strand, within MIT1002_00765 at 843.755 kb on - strand, within MIT1002_00765 at 843.764 kb on - strand, within MIT1002_00765 at 843.804 kb on - strand, within MIT1002_00765 at 843.839 kb on + strand at 843.839 kb on + strand at 843.847 kb on - strand at 843.847 kb on - strand at 843.852 kb on - strand at 843.998 kb on - strand at 844.144 kb on - strand, within MIT1002_00766 at 844.149 kb on - strand, within MIT1002_00766 at 844.161 kb on - strand, within MIT1002_00766 at 844.172 kb on + strand, within MIT1002_00766 at 844.180 kb on - strand, within MIT1002_00766 at 844.181 kb on - strand, within MIT1002_00766 at 844.183 kb on + strand, within MIT1002_00766 at 844.406 kb on - strand, within MIT1002_00766 at 844.546 kb on - strand at 844.553 kb on + strand at 844.553 kb on + strand at 844.553 kb on + strand at 844.553 kb on + strand at 844.553 kb on + strand at 844.553 kb on + strand at 844.553 kb on + strand at 844.553 kb on + strand at 844.561 kb on - strand at 844.595 kb on + strand at 844.603 kb on - strand at 844.628 kb on - strand at 844.637 kb on - strand at 844.646 kb on + strand at 844.779 kb on - strand at 844.779 kb on - strand at 844.796 kb on + strand at 844.804 kb on - strand at 844.833 kb on - strand, within MIT1002_00767 at 844.862 kb on + strand, within MIT1002_00767 at 844.904 kb on + strand, within MIT1002_00767 at 844.929 kb on + strand, within MIT1002_00767 at 844.937 kb on - strand, within MIT1002_00767 at 844.942 kb on + strand, within MIT1002_00767 at 844.950 kb on - strand, within MIT1002_00767 at 844.950 kb on - strand, within MIT1002_00767 at 844.950 kb on - strand, within MIT1002_00767
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3 remove 841,493 + MIT1002_00764 0.70 -0.2 841,494 + MIT1002_00764 0.70 -0.2 841,495 + MIT1002_00764 0.70 +0.5 841,495 + MIT1002_00764 0.70 +1.2 841,503 - MIT1002_00764 0.71 -1.2 841,503 - MIT1002_00764 0.71 -0.2 841,577 + MIT1002_00764 0.73 -0.4 841,577 + MIT1002_00764 0.73 +0.8 841,582 - MIT1002_00764 0.74 -1.8 841,584 - MIT1002_00764 0.74 +0.8 841,585 - MIT1002_00764 0.74 +2.4 841,585 - MIT1002_00764 0.74 -0.9 841,707 + MIT1002_00764 0.78 -0.1 841,817 - MIT1002_00764 0.82 +2.5 841,836 + MIT1002_00764 0.83 -0.3 841,896 - MIT1002_00764 0.86 -0.1 841,909 + MIT1002_00764 0.86 -2.5 841,909 + MIT1002_00764 0.86 +0.0 841,909 + MIT1002_00764 0.86 +0.3 841,909 + MIT1002_00764 0.86 -2.4 841,909 + MIT1002_00764 0.86 +3.1 841,909 + MIT1002_00764 0.86 +0.7 841,909 + MIT1002_00764 0.86 -0.3 841,909 + MIT1002_00764 0.86 -1.0 841,917 - MIT1002_00764 0.86 -0.7 841,917 - MIT1002_00764 0.86 -0.9 841,917 - MIT1002_00764 0.86 -3.1 841,917 - MIT1002_00764 0.86 +1.0 841,917 - MIT1002_00764 0.86 +0.8 841,917 - MIT1002_00764 0.86 -0.4 841,917 - MIT1002_00764 0.86 -0.1 841,917 - MIT1002_00764 0.86 +0.7 841,939 - MIT1002_00764 0.87 +0.2 841,965 - MIT1002_00764 0.88 +1.7 842,038 - +1.1 842,072 + +1.1 842,130 + -1.0 842,156 + -1.5 842,258 - +0.3 842,268 - +1.2 842,271 + +1.3 842,271 + -0.9 842,396 + +0.5 842,411 + -0.7 842,488 + -0.3 842,545 - -0.1 842,664 - MIT1002_00765 0.16 +0.8 842,704 + MIT1002_00765 0.18 +0.4 842,738 - MIT1002_00765 0.21 -2.0 842,777 + MIT1002_00765 0.23 -0.7 842,783 + MIT1002_00765 0.24 -1.2 842,825 - MIT1002_00765 0.26 +1.0 842,839 - MIT1002_00765 0.27 -0.1 842,839 - MIT1002_00765 0.27 -0.9 842,917 + MIT1002_00765 0.32 +0.2 842,993 - MIT1002_00765 0.37 -0.2 842,995 + MIT1002_00765 0.37 +0.3 843,004 - MIT1002_00765 0.38 -0.1 843,004 - MIT1002_00765 0.38 +1.3 843,009 + MIT1002_00765 0.38 -1.0 843,147 + MIT1002_00765 0.47 +0.8 843,147 + MIT1002_00765 0.47 +0.5 843,155 - MIT1002_00765 0.47 +0.2 843,155 - MIT1002_00765 0.47 +0.5 843,155 - MIT1002_00765 0.47 +0.7 843,263 + MIT1002_00765 0.54 +1.1 843,340 + MIT1002_00765 0.59 +0.9 843,389 + MIT1002_00765 0.62 +1.3 843,389 + MIT1002_00765 0.62 -0.5 843,397 - MIT1002_00765 0.63 +0.1 843,412 + MIT1002_00765 0.64 -0.5 843,412 + MIT1002_00765 0.64 -0.8 843,414 - MIT1002_00765 0.64 +0.6 843,423 - MIT1002_00765 0.64 -0.4 843,462 + MIT1002_00765 0.67 -0.4 843,462 + MIT1002_00765 0.67 -2.2 843,487 + MIT1002_00765 0.68 +1.0 843,487 + MIT1002_00765 0.68 +0.2 843,495 - MIT1002_00765 0.69 +0.1 843,495 - MIT1002_00765 0.69 +0.3 843,497 - MIT1002_00765 0.69 +1.4 843,497 - MIT1002_00765 0.69 +1.2 843,499 - MIT1002_00765 0.69 +1.4 843,502 - MIT1002_00765 0.69 -0.2 843,502 - MIT1002_00765 0.69 -0.1 843,546 + MIT1002_00765 0.72 +3.0 843,546 + MIT1002_00765 0.72 +0.3 843,546 + MIT1002_00765 0.72 -2.5 843,554 - MIT1002_00765 0.73 -0.4 843,567 + MIT1002_00765 0.73 -0.8 843,733 - MIT1002_00765 0.84 +1.2 843,737 + MIT1002_00765 0.84 +1.7 843,737 + MIT1002_00765 0.84 -1.0 843,742 + MIT1002_00765 0.85 +0.0 843,755 - MIT1002_00765 0.85 +1.1 843,764 - MIT1002_00765 0.86 -3.3 843,804 - MIT1002_00765 0.89 -1.5 843,839 + +0.5 843,839 + -0.7 843,847 - -1.4 843,847 - +1.4 843,852 - -0.2 843,998 - +1.6 844,144 - MIT1002_00766 0.10 -0.9 844,149 - MIT1002_00766 0.11 +1.5 844,161 - MIT1002_00766 0.14 +0.6 844,172 + MIT1002_00766 0.16 -2.5 844,180 - MIT1002_00766 0.18 -0.6 844,181 - MIT1002_00766 0.18 -0.6 844,183 + MIT1002_00766 0.19 -0.0 844,406 - MIT1002_00766 0.66 +1.1 844,546 - +0.3 844,553 + -0.2 844,553 + -1.1 844,553 + -0.5 844,553 + -0.4 844,553 + -0.2 844,553 + -0.1 844,553 + -0.4 844,553 + -0.4 844,561 - -0.2 844,595 + +1.0 844,603 - -0.3 844,628 - -0.8 844,637 - +0.3 844,646 + +0.0 844,779 - +0.2 844,779 - -0.1 844,796 + +0.6 844,804 - +0.0 844,833 - MIT1002_00767 0.12 +2.0 844,862 + MIT1002_00767 0.14 +1.0 844,904 + MIT1002_00767 0.18 +0.7 844,929 + MIT1002_00767 0.20 +0.1 844,937 - MIT1002_00767 0.20 +0.1 844,942 + MIT1002_00767 0.21 +0.5 844,950 - MIT1002_00767 0.22 +0.6 844,950 - MIT1002_00767 0.22 -0.2 844,950 - MIT1002_00767 0.22 -0.3
Or see this region's nucleotide sequence