Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00728

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00726 and MIT1002_00727 are separated by 65 nucleotidesMIT1002_00727 and MIT1002_00728 are separated by 227 nucleotidesMIT1002_00728 and MIT1002_00729 are separated by 13 nucleotides MIT1002_00726: MIT1002_00726 - aldolase II superfamily protein, at 794,564 to 795,331 _00726 MIT1002_00727: MIT1002_00727 - nucleoside triphosphatase YtkD, at 795,397 to 795,942 _00727 MIT1002_00728: MIT1002_00728 - Multidrug transporter MdtA, at 796,170 to 797,219 _00728 MIT1002_00729: MIT1002_00729 - putative efflux pump membrane transporter TtgB, at 797,233 to 800,340 _00729 Position (kb) 796 797 798Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 795.188 kb on - strand, within MIT1002_00726at 795.199 kb on + strand, within MIT1002_00726at 795.237 kb on + strand, within MIT1002_00726at 795.307 kb on + strandat 795.307 kb on + strandat 795.308 kb on + strandat 795.344 kb on + strandat 795.429 kb on - strandat 795.449 kb on - strandat 795.480 kb on + strand, within MIT1002_00727at 795.480 kb on + strand, within MIT1002_00727at 795.480 kb on + strand, within MIT1002_00727at 795.480 kb on + strand, within MIT1002_00727at 795.488 kb on - strand, within MIT1002_00727at 795.488 kb on - strand, within MIT1002_00727at 795.488 kb on - strand, within MIT1002_00727at 795.490 kb on - strand, within MIT1002_00727at 795.494 kb on + strand, within MIT1002_00727at 795.537 kb on + strand, within MIT1002_00727at 795.545 kb on - strand, within MIT1002_00727at 795.600 kb on + strand, within MIT1002_00727at 795.637 kb on + strand, within MIT1002_00727at 795.669 kb on + strand, within MIT1002_00727at 795.677 kb on - strand, within MIT1002_00727at 795.798 kb on + strand, within MIT1002_00727at 795.808 kb on + strand, within MIT1002_00727at 795.808 kb on + strand, within MIT1002_00727at 795.833 kb on + strand, within MIT1002_00727at 795.833 kb on + strand, within MIT1002_00727at 796.064 kb on - strandat 796.072 kb on - strandat 796.121 kb on - strandat 796.166 kb on + strandat 796.166 kb on + strandat 796.167 kb on - strandat 796.215 kb on - strandat 796.215 kb on - strandat 796.225 kb on + strandat 796.233 kb on - strandat 796.270 kb on + strandat 796.397 kb on - strand, within MIT1002_00728at 796.486 kb on + strand, within MIT1002_00728at 796.486 kb on + strand, within MIT1002_00728at 796.486 kb on + strand, within MIT1002_00728at 796.507 kb on + strand, within MIT1002_00728at 796.564 kb on - strand, within MIT1002_00728at 796.578 kb on - strand, within MIT1002_00728at 796.601 kb on + strand, within MIT1002_00728at 796.601 kb on + strand, within MIT1002_00728at 796.601 kb on + strand, within MIT1002_00728at 796.601 kb on + strand, within MIT1002_00728at 796.601 kb on + strand, within MIT1002_00728at 796.609 kb on - strand, within MIT1002_00728at 796.609 kb on - strand, within MIT1002_00728at 796.609 kb on - strand, within MIT1002_00728at 796.609 kb on - strand, within MIT1002_00728at 796.630 kb on - strand, within MIT1002_00728at 796.632 kb on + strand, within MIT1002_00728at 796.680 kb on + strand, within MIT1002_00728at 796.751 kb on + strand, within MIT1002_00728at 796.754 kb on - strand, within MIT1002_00728at 796.763 kb on - strand, within MIT1002_00728at 796.782 kb on + strand, within MIT1002_00728at 796.838 kb on + strand, within MIT1002_00728at 796.838 kb on + strand, within MIT1002_00728at 796.846 kb on - strand, within MIT1002_00728at 796.846 kb on - strand, within MIT1002_00728at 796.909 kb on + strand, within MIT1002_00728at 796.911 kb on + strand, within MIT1002_00728at 796.911 kb on + strand, within MIT1002_00728at 796.917 kb on - strand, within MIT1002_00728at 796.919 kb on - strand, within MIT1002_00728at 796.936 kb on + strand, within MIT1002_00728at 796.940 kb on + strand, within MIT1002_00728at 796.957 kb on + strand, within MIT1002_00728at 797.087 kb on - strand, within MIT1002_00728at 797.118 kb on - strandat 797.137 kb on + strandat 797.142 kb on + strandat 797.173 kb on + strandat 797.173 kb on + strandat 797.173 kb on + strandat 797.181 kb on - strandat 797.181 kb on - strandat 797.201 kb on - strandat 797.323 kb on + strandat 797.383 kb on - strandat 797.392 kb on - strandat 797.435 kb on - strandat 797.450 kb on + strandat 797.476 kb on - strandat 797.491 kb on - strandat 797.571 kb on - strand, within MIT1002_00729at 797.578 kb on + strand, within MIT1002_00729at 797.606 kb on + strand, within MIT1002_00729at 797.614 kb on - strand, within MIT1002_00729at 797.614 kb on - strand, within MIT1002_00729at 797.655 kb on - strand, within MIT1002_00729at 797.681 kb on + strand, within MIT1002_00729at 797.681 kb on - strand, within MIT1002_00729at 797.767 kb on + strand, within MIT1002_00729at 797.767 kb on + strand, within MIT1002_00729at 797.858 kb on - strand, within MIT1002_00729at 797.930 kb on + strand, within MIT1002_00729at 797.938 kb on - strand, within MIT1002_00729at 797.971 kb on - strand, within MIT1002_00729at 798.026 kb on + strand, within MIT1002_00729at 798.096 kb on + strand, within MIT1002_00729at 798.104 kb on - strand, within MIT1002_00729at 798.104 kb on - strand, within MIT1002_00729at 798.110 kb on + strand, within MIT1002_00729at 798.110 kb on + strand, within MIT1002_00729at 798.118 kb on - strand, within MIT1002_00729at 798.118 kb on - strand, within MIT1002_00729at 798.144 kb on - strand, within MIT1002_00729at 798.199 kb on - strand, within MIT1002_00729

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
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795,188 - MIT1002_00726 0.81 +0.3
795,199 + MIT1002_00726 0.83 +0.3
795,237 + MIT1002_00726 0.88 +1.2
795,307 + +0.3
795,307 + -0.4
795,308 + +0.0
795,344 + -1.1
795,429 - +0.5
795,449 - +1.3
795,480 + MIT1002_00727 0.15 +0.6
795,480 + MIT1002_00727 0.15 +0.6
795,480 + MIT1002_00727 0.15 -2.0
795,480 + MIT1002_00727 0.15 +1.9
795,488 - MIT1002_00727 0.17 +1.1
795,488 - MIT1002_00727 0.17 -0.1
795,488 - MIT1002_00727 0.17 +0.7
795,490 - MIT1002_00727 0.17 +0.3
795,494 + MIT1002_00727 0.18 -0.5
795,537 + MIT1002_00727 0.26 +1.5
795,545 - MIT1002_00727 0.27 +0.4
795,600 + MIT1002_00727 0.37 -0.6
795,637 + MIT1002_00727 0.44 -0.2
795,669 + MIT1002_00727 0.50 +0.3
795,677 - MIT1002_00727 0.51 +0.2
795,798 + MIT1002_00727 0.73 -1.6
795,808 + MIT1002_00727 0.75 +1.0
795,808 + MIT1002_00727 0.75 +1.6
795,833 + MIT1002_00727 0.80 +0.6
795,833 + MIT1002_00727 0.80 -0.9
796,064 - -1.0
796,072 - -0.3
796,121 - -0.1
796,166 + -0.4
796,166 + +0.2
796,167 - -0.9
796,215 - +0.9
796,215 - +1.0
796,225 + +1.7
796,233 - -2.9
796,270 + +0.4
796,397 - MIT1002_00728 0.22 +2.3
796,486 + MIT1002_00728 0.30 -0.1
796,486 + MIT1002_00728 0.30 +0.4
796,486 + MIT1002_00728 0.30 +0.6
796,507 + MIT1002_00728 0.32 +1.0
796,564 - MIT1002_00728 0.38 +0.4
796,578 - MIT1002_00728 0.39 +1.4
796,601 + MIT1002_00728 0.41 +0.5
796,601 + MIT1002_00728 0.41 -0.4
796,601 + MIT1002_00728 0.41 +0.4
796,601 + MIT1002_00728 0.41 +1.7
796,601 + MIT1002_00728 0.41 +1.6
796,609 - MIT1002_00728 0.42 -0.7
796,609 - MIT1002_00728 0.42 +0.0
796,609 - MIT1002_00728 0.42 +0.0
796,609 - MIT1002_00728 0.42 +1.0
796,630 - MIT1002_00728 0.44 -0.8
796,632 + MIT1002_00728 0.44 +0.6
796,680 + MIT1002_00728 0.49 -0.3
796,751 + MIT1002_00728 0.55 +1.3
796,754 - MIT1002_00728 0.56 +0.4
796,763 - MIT1002_00728 0.56 +2.7
796,782 + MIT1002_00728 0.58 -1.9
796,838 + MIT1002_00728 0.64 -3.4
796,838 + MIT1002_00728 0.64 -0.6
796,846 - MIT1002_00728 0.64 +1.1
796,846 - MIT1002_00728 0.64 +0.0
796,909 + MIT1002_00728 0.70 -2.9
796,911 + MIT1002_00728 0.71 -0.8
796,911 + MIT1002_00728 0.71 -0.6
796,917 - MIT1002_00728 0.71 +1.6
796,919 - MIT1002_00728 0.71 -0.2
796,936 + MIT1002_00728 0.73 +0.6
796,940 + MIT1002_00728 0.73 +0.4
796,957 + MIT1002_00728 0.75 +0.3
797,087 - MIT1002_00728 0.87 +0.6
797,118 - -0.3
797,137 + +0.5
797,142 + +1.3
797,173 + +0.3
797,173 + +1.3
797,173 + -0.1
797,181 - -0.6
797,181 - +0.0
797,201 - +0.5
797,323 + +0.2
797,383 - -1.7
797,392 - -0.3
797,435 - +0.7
797,450 + -1.6
797,476 - +0.5
797,491 - -0.0
797,571 - MIT1002_00729 0.11 -1.6
797,578 + MIT1002_00729 0.11 -0.2
797,606 + MIT1002_00729 0.12 +2.0
797,614 - MIT1002_00729 0.12 +0.2
797,614 - MIT1002_00729 0.12 -1.6
797,655 - MIT1002_00729 0.14 -1.2
797,681 + MIT1002_00729 0.14 +1.4
797,681 - MIT1002_00729 0.14 -1.0
797,767 + MIT1002_00729 0.17 -0.2
797,767 + MIT1002_00729 0.17 +0.3
797,858 - MIT1002_00729 0.20 +0.6
797,930 + MIT1002_00729 0.22 -1.6
797,938 - MIT1002_00729 0.23 -0.1
797,971 - MIT1002_00729 0.24 -0.6
798,026 + MIT1002_00729 0.26 -1.3
798,096 + MIT1002_00729 0.28 -1.0
798,104 - MIT1002_00729 0.28 +0.6
798,104 - MIT1002_00729 0.28 +0.5
798,110 + MIT1002_00729 0.28 -0.3
798,110 + MIT1002_00729 0.28 +0.2
798,118 - MIT1002_00729 0.28 +0.2
798,118 - MIT1002_00729 0.28 +1.2
798,144 - MIT1002_00729 0.29 +0.5
798,199 - MIT1002_00729 0.31 +0.7

Or see this region's nucleotide sequence