Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00711 and MIT1002_00712 are separated by 392 nucleotides MIT1002_00712 and MIT1002_00713 are separated by 58 nucleotides MIT1002_00713 and MIT1002_00714 are separated by 86 nucleotides
MIT1002_00711: MIT1002_00711 - Bicarbonate transport ATP-binding protein CmpD, at 778,766 to 779,668
_00711
MIT1002_00712: MIT1002_00712 - hypothetical protein, at 780,061 to 781,281
_00712
MIT1002_00713: MIT1002_00713 - 5'-nucleotidase, at 781,340 to 781,930
_00713
MIT1002_00714: MIT1002_00714 - Thiol:disulfide interchange protein DsbA precursor, at 782,017 to 782,649
_00714
Position (kb) 780
781
782 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 779.130 kb on + strand, within MIT1002_00711 at 779.130 kb on + strand, within MIT1002_00711 at 779.130 kb on + strand, within MIT1002_00711 at 779.130 kb on + strand, within MIT1002_00711 at 779.130 kb on + strand, within MIT1002_00711 at 779.130 kb on + strand, within MIT1002_00711 at 779.130 kb on + strand, within MIT1002_00711 at 779.130 kb on + strand, within MIT1002_00711 at 779.130 kb on + strand, within MIT1002_00711 at 779.130 kb on + strand, within MIT1002_00711 at 779.130 kb on + strand, within MIT1002_00711 at 779.138 kb on - strand, within MIT1002_00711 at 779.138 kb on - strand, within MIT1002_00711 at 779.138 kb on - strand, within MIT1002_00711 at 779.138 kb on - strand, within MIT1002_00711 at 779.138 kb on - strand, within MIT1002_00711 at 779.158 kb on - strand, within MIT1002_00711 at 779.158 kb on - strand, within MIT1002_00711 at 779.190 kb on + strand, within MIT1002_00711 at 779.190 kb on + strand, within MIT1002_00711 at 779.198 kb on - strand, within MIT1002_00711 at 779.253 kb on - strand, within MIT1002_00711 at 779.285 kb on - strand, within MIT1002_00711 at 779.302 kb on - strand, within MIT1002_00711 at 779.324 kb on + strand, within MIT1002_00711 at 779.352 kb on + strand, within MIT1002_00711 at 779.466 kb on + strand, within MIT1002_00711 at 779.673 kb on + strand at 779.683 kb on + strand at 779.686 kb on - strand at 779.711 kb on - strand at 779.721 kb on - strand at 779.726 kb on + strand at 779.736 kb on + strand at 779.744 kb on - strand at 779.759 kb on + strand at 779.767 kb on - strand at 779.783 kb on - strand at 780.037 kb on + strand at 780.055 kb on + strand at 780.068 kb on - strand at 780.105 kb on + strand at 780.115 kb on + strand at 780.128 kb on - strand at 780.172 kb on - strand at 780.176 kb on + strand at 780.189 kb on - strand, within MIT1002_00712 at 780.208 kb on + strand, within MIT1002_00712 at 780.216 kb on - strand, within MIT1002_00712 at 780.264 kb on - strand, within MIT1002_00712 at 780.276 kb on - strand, within MIT1002_00712 at 780.287 kb on - strand, within MIT1002_00712 at 780.307 kb on + strand, within MIT1002_00712 at 780.328 kb on - strand, within MIT1002_00712 at 780.345 kb on - strand, within MIT1002_00712 at 780.356 kb on + strand, within MIT1002_00712 at 780.361 kb on - strand, within MIT1002_00712 at 780.363 kb on + strand, within MIT1002_00712 at 780.368 kb on + strand, within MIT1002_00712 at 780.386 kb on - strand, within MIT1002_00712 at 780.404 kb on - strand, within MIT1002_00712 at 780.430 kb on - strand, within MIT1002_00712 at 780.432 kb on + strand, within MIT1002_00712 at 780.432 kb on + strand, within MIT1002_00712 at 780.432 kb on + strand, within MIT1002_00712 at 780.432 kb on + strand, within MIT1002_00712 at 780.432 kb on + strand, within MIT1002_00712 at 780.440 kb on - strand, within MIT1002_00712 at 780.440 kb on - strand, within MIT1002_00712 at 780.466 kb on - strand, within MIT1002_00712 at 780.466 kb on - strand, within MIT1002_00712 at 780.572 kb on + strand, within MIT1002_00712 at 780.572 kb on + strand, within MIT1002_00712 at 780.580 kb on - strand, within MIT1002_00712 at 780.580 kb on - strand, within MIT1002_00712 at 780.582 kb on + strand, within MIT1002_00712 at 780.582 kb on + strand, within MIT1002_00712 at 780.582 kb on + strand, within MIT1002_00712 at 780.590 kb on - strand, within MIT1002_00712 at 780.631 kb on + strand, within MIT1002_00712 at 780.664 kb on + strand, within MIT1002_00712 at 780.664 kb on + strand, within MIT1002_00712 at 780.699 kb on + strand, within MIT1002_00712 at 780.707 kb on + strand, within MIT1002_00712 at 780.746 kb on + strand, within MIT1002_00712 at 780.754 kb on - strand, within MIT1002_00712 at 780.771 kb on + strand, within MIT1002_00712 at 780.858 kb on - strand, within MIT1002_00712 at 780.959 kb on - strand, within MIT1002_00712 at 781.022 kb on + strand, within MIT1002_00712 at 781.022 kb on + strand, within MIT1002_00712 at 781.022 kb on + strand, within MIT1002_00712 at 781.022 kb on + strand, within MIT1002_00712 at 781.022 kb on + strand, within MIT1002_00712 at 781.022 kb on + strand, within MIT1002_00712 at 781.027 kb on + strand, within MIT1002_00712 at 781.027 kb on + strand, within MIT1002_00712 at 781.030 kb on - strand, within MIT1002_00712 at 781.030 kb on - strand, within MIT1002_00712 at 781.030 kb on - strand, within MIT1002_00712 at 781.030 kb on - strand, within MIT1002_00712 at 781.030 kb on - strand, within MIT1002_00712 at 781.032 kb on - strand, within MIT1002_00712 at 781.122 kb on + strand, within MIT1002_00712 at 781.196 kb on - strand at 781.332 kb on - strand at 781.333 kb on - strand at 781.372 kb on + strand at 781.372 kb on + strand at 781.379 kb on - strand at 781.387 kb on - strand at 781.389 kb on + strand at 781.392 kb on - strand at 781.428 kb on + strand, within MIT1002_00713 at 781.436 kb on - strand, within MIT1002_00713 at 781.436 kb on - strand, within MIT1002_00713 at 781.460 kb on + strand, within MIT1002_00713 at 781.568 kb on - strand, within MIT1002_00713 at 781.661 kb on + strand, within MIT1002_00713 at 781.793 kb on - strand, within MIT1002_00713 at 781.814 kb on - strand, within MIT1002_00713 at 782.123 kb on + strand, within MIT1002_00714
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3 remove 779,130 + MIT1002_00711 0.40 -0.7 779,130 + MIT1002_00711 0.40 +0.1 779,130 + MIT1002_00711 0.40 -0.6 779,130 + MIT1002_00711 0.40 +0.9 779,130 + MIT1002_00711 0.40 -2.1 779,130 + MIT1002_00711 0.40 -0.3 779,130 + MIT1002_00711 0.40 +0.5 779,130 + MIT1002_00711 0.40 +0.6 779,130 + MIT1002_00711 0.40 +0.6 779,130 + MIT1002_00711 0.40 -1.4 779,130 + MIT1002_00711 0.40 +0.9 779,138 - MIT1002_00711 0.41 +1.2 779,138 - MIT1002_00711 0.41 -0.9 779,138 - MIT1002_00711 0.41 -3.2 779,138 - MIT1002_00711 0.41 +0.4 779,138 - MIT1002_00711 0.41 +0.0 779,158 - MIT1002_00711 0.43 -1.0 779,158 - MIT1002_00711 0.43 +2.7 779,190 + MIT1002_00711 0.47 -0.5 779,190 + MIT1002_00711 0.47 -0.6 779,198 - MIT1002_00711 0.48 +1.3 779,253 - MIT1002_00711 0.54 -0.3 779,285 - MIT1002_00711 0.57 +1.2 779,302 - MIT1002_00711 0.59 +0.8 779,324 + MIT1002_00711 0.62 -1.5 779,352 + MIT1002_00711 0.65 +0.3 779,466 + MIT1002_00711 0.78 +2.4 779,673 + -0.3 779,683 + +0.4 779,686 - -2.7 779,711 - -0.3 779,721 - +1.4 779,726 + -0.6 779,736 + +0.5 779,744 - +0.7 779,759 + -0.2 779,767 - +0.4 779,783 - +0.6 780,037 + -0.3 780,055 + +1.6 780,068 - +0.8 780,105 + +0.3 780,115 + +0.6 780,128 - +0.7 780,172 - +0.1 780,176 + -2.6 780,189 - MIT1002_00712 0.10 -0.5 780,208 + MIT1002_00712 0.12 -0.2 780,216 - MIT1002_00712 0.13 +0.5 780,264 - MIT1002_00712 0.17 +1.2 780,276 - MIT1002_00712 0.18 -0.3 780,287 - MIT1002_00712 0.19 -0.5 780,307 + MIT1002_00712 0.20 +1.4 780,328 - MIT1002_00712 0.22 +0.4 780,345 - MIT1002_00712 0.23 +0.3 780,356 + MIT1002_00712 0.24 +0.0 780,361 - MIT1002_00712 0.25 -0.4 780,363 + MIT1002_00712 0.25 -1.4 780,368 + MIT1002_00712 0.25 -2.0 780,386 - MIT1002_00712 0.27 -1.5 780,404 - MIT1002_00712 0.28 -0.0 780,430 - MIT1002_00712 0.30 +1.3 780,432 + MIT1002_00712 0.30 -2.5 780,432 + MIT1002_00712 0.30 -1.9 780,432 + MIT1002_00712 0.30 +1.0 780,432 + MIT1002_00712 0.30 -0.1 780,432 + MIT1002_00712 0.30 +0.9 780,440 - MIT1002_00712 0.31 +1.9 780,440 - MIT1002_00712 0.31 +0.8 780,466 - MIT1002_00712 0.33 +0.6 780,466 - MIT1002_00712 0.33 +1.3 780,572 + MIT1002_00712 0.42 +2.0 780,572 + MIT1002_00712 0.42 +0.2 780,580 - MIT1002_00712 0.43 -0.3 780,580 - MIT1002_00712 0.43 -1.9 780,582 + MIT1002_00712 0.43 -0.4 780,582 + MIT1002_00712 0.43 +0.3 780,582 + MIT1002_00712 0.43 +0.3 780,590 - MIT1002_00712 0.43 +0.1 780,631 + MIT1002_00712 0.47 -3.4 780,664 + MIT1002_00712 0.49 +2.1 780,664 + MIT1002_00712 0.49 +0.8 780,699 + MIT1002_00712 0.52 +0.3 780,707 + MIT1002_00712 0.53 -0.5 780,746 + MIT1002_00712 0.56 +0.6 780,754 - MIT1002_00712 0.57 -0.4 780,771 + MIT1002_00712 0.58 +0.1 780,858 - MIT1002_00712 0.65 -0.6 780,959 - MIT1002_00712 0.74 +0.3 781,022 + MIT1002_00712 0.79 +0.1 781,022 + MIT1002_00712 0.79 -0.1 781,022 + MIT1002_00712 0.79 +0.1 781,022 + MIT1002_00712 0.79 +0.1 781,022 + MIT1002_00712 0.79 -0.9 781,022 + MIT1002_00712 0.79 +0.4 781,027 + MIT1002_00712 0.79 -0.2 781,027 + MIT1002_00712 0.79 +1.1 781,030 - MIT1002_00712 0.79 +0.0 781,030 - MIT1002_00712 0.79 +0.8 781,030 - MIT1002_00712 0.79 +1.6 781,030 - MIT1002_00712 0.79 -0.8 781,030 - MIT1002_00712 0.79 -1.2 781,032 - MIT1002_00712 0.80 -2.3 781,122 + MIT1002_00712 0.87 -1.6 781,196 - +0.3 781,332 - +0.6 781,333 - +0.4 781,372 + -1.0 781,372 + +1.8 781,379 - +1.4 781,387 - +0.1 781,389 + +0.1 781,392 - -2.0 781,428 + MIT1002_00713 0.15 -0.3 781,436 - MIT1002_00713 0.16 +0.2 781,436 - MIT1002_00713 0.16 +2.2 781,460 + MIT1002_00713 0.20 +0.7 781,568 - MIT1002_00713 0.39 +1.7 781,661 + MIT1002_00713 0.54 -0.7 781,793 - MIT1002_00713 0.77 +0.0 781,814 - MIT1002_00713 0.80 -1.4 782,123 + MIT1002_00714 0.17 -1.0
Or see this region's nucleotide sequence