Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00707 and MIT1002_00708 are separated by 193 nucleotides MIT1002_00708 and MIT1002_00709 are separated by 242 nucleotides
MIT1002_00707: MIT1002_00707 - Chemotaxis regulator BdlA, at 774,369 to 775,685
_00707
MIT1002_00708: MIT1002_00708 - hypothetical protein, at 775,879 to 776,013
_00708
MIT1002_00709: MIT1002_00709 - Nitrate transport protein NrtA precursor, at 776,256 to 777,665
_00709
Position (kb) 775
776
777 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 774.903 kb on - strand, within MIT1002_00707 at 774.941 kb on + strand, within MIT1002_00707 at 774.949 kb on - strand, within MIT1002_00707 at 774.949 kb on - strand, within MIT1002_00707 at 774.959 kb on - strand, within MIT1002_00707 at 774.959 kb on - strand, within MIT1002_00707 at 774.994 kb on + strand, within MIT1002_00707 at 775.010 kb on + strand, within MIT1002_00707 at 775.033 kb on - strand, within MIT1002_00707 at 775.056 kb on - strand, within MIT1002_00707 at 775.063 kb on - strand, within MIT1002_00707 at 775.068 kb on - strand, within MIT1002_00707 at 775.073 kb on + strand, within MIT1002_00707 at 775.081 kb on - strand, within MIT1002_00707 at 775.130 kb on + strand, within MIT1002_00707 at 775.130 kb on + strand, within MIT1002_00707 at 775.195 kb on - strand, within MIT1002_00707 at 775.250 kb on + strand, within MIT1002_00707 at 775.251 kb on - strand, within MIT1002_00707 at 775.251 kb on - strand, within MIT1002_00707 at 775.300 kb on + strand, within MIT1002_00707 at 775.300 kb on + strand, within MIT1002_00707 at 775.388 kb on + strand, within MIT1002_00707 at 775.497 kb on - strand, within MIT1002_00707 at 775.584 kb on + strand at 775.584 kb on + strand at 775.584 kb on + strand at 775.584 kb on + strand at 775.584 kb on + strand at 775.584 kb on + strand at 775.585 kb on + strand at 775.592 kb on - strand at 775.592 kb on - strand at 775.592 kb on - strand at 775.592 kb on - strand at 775.655 kb on - strand at 775.709 kb on + strand at 775.717 kb on - strand at 775.721 kb on + strand at 775.770 kb on - strand at 775.772 kb on - strand at 775.909 kb on + strand, within MIT1002_00708 at 775.909 kb on + strand, within MIT1002_00708 at 775.961 kb on - strand, within MIT1002_00708 at 775.963 kb on - strand, within MIT1002_00708 at 775.963 kb on - strand, within MIT1002_00708 at 775.966 kb on + strand, within MIT1002_00708 at 775.970 kb on - strand, within MIT1002_00708 at 776.102 kb on + strand at 776.114 kb on - strand at 776.151 kb on - strand at 776.190 kb on + strand at 776.207 kb on + strand at 776.305 kb on + strand at 776.311 kb on + strand at 776.317 kb on + strand at 776.320 kb on - strand at 776.386 kb on + strand at 776.436 kb on + strand, within MIT1002_00709 at 776.574 kb on + strand, within MIT1002_00709 at 776.628 kb on - strand, within MIT1002_00709 at 776.779 kb on + strand, within MIT1002_00709 at 776.835 kb on - strand, within MIT1002_00709 at 776.879 kb on - strand, within MIT1002_00709 at 776.879 kb on - strand, within MIT1002_00709 at 776.992 kb on + strand, within MIT1002_00709 at 776.995 kb on - strand, within MIT1002_00709 at 777.000 kb on - strand, within MIT1002_00709
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3 remove 774,903 - MIT1002_00707 0.41 -0.2 774,941 + MIT1002_00707 0.43 -1.1 774,949 - MIT1002_00707 0.44 -0.1 774,949 - MIT1002_00707 0.44 +0.8 774,959 - MIT1002_00707 0.45 +1.6 774,959 - MIT1002_00707 0.45 +0.8 774,994 + MIT1002_00707 0.47 -0.8 775,010 + MIT1002_00707 0.49 +1.1 775,033 - MIT1002_00707 0.50 +1.2 775,056 - MIT1002_00707 0.52 -0.5 775,063 - MIT1002_00707 0.53 -1.0 775,068 - MIT1002_00707 0.53 +0.3 775,073 + MIT1002_00707 0.53 -1.3 775,081 - MIT1002_00707 0.54 -2.5 775,130 + MIT1002_00707 0.58 +0.4 775,130 + MIT1002_00707 0.58 +1.7 775,195 - MIT1002_00707 0.63 -1.9 775,250 + MIT1002_00707 0.67 -0.8 775,251 - MIT1002_00707 0.67 -1.7 775,251 - MIT1002_00707 0.67 +0.7 775,300 + MIT1002_00707 0.71 +0.9 775,300 + MIT1002_00707 0.71 -1.4 775,388 + MIT1002_00707 0.77 +0.4 775,497 - MIT1002_00707 0.86 -0.4 775,584 + -1.4 775,584 + +2.2 775,584 + +0.1 775,584 + +0.3 775,584 + -1.0 775,584 + +0.0 775,585 + -0.1 775,592 - -0.5 775,592 - -0.1 775,592 - -0.1 775,592 - -0.5 775,655 - -0.7 775,709 + +0.7 775,717 - +0.7 775,721 + +1.2 775,770 - +0.9 775,772 - +1.5 775,909 + MIT1002_00708 0.22 +0.2 775,909 + MIT1002_00708 0.22 +0.8 775,961 - MIT1002_00708 0.61 +1.1 775,963 - MIT1002_00708 0.62 +0.3 775,963 - MIT1002_00708 0.62 +0.6 775,966 + MIT1002_00708 0.64 +0.7 775,970 - MIT1002_00708 0.67 +0.8 776,102 + -0.3 776,114 - +0.2 776,151 - -2.0 776,190 + -0.0 776,207 + +0.2 776,305 + +0.1 776,311 + -2.9 776,317 + +0.4 776,320 - -0.4 776,386 + +0.3 776,436 + MIT1002_00709 0.13 -0.5 776,574 + MIT1002_00709 0.23 +0.1 776,628 - MIT1002_00709 0.26 +1.6 776,779 + MIT1002_00709 0.37 +1.0 776,835 - MIT1002_00709 0.41 -0.4 776,879 - MIT1002_00709 0.44 -1.3 776,879 - MIT1002_00709 0.44 +1.7 776,992 + MIT1002_00709 0.52 -1.3 776,995 - MIT1002_00709 0.52 -2.6 777,000 - MIT1002_00709 0.53 -0.7
Or see this region's nucleotide sequence