Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00707

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00706 and MIT1002_00707 are separated by 282 nucleotidesMIT1002_00707 and MIT1002_00708 are separated by 193 nucleotidesMIT1002_00708 and MIT1002_00709 are separated by 242 nucleotides MIT1002_00706: MIT1002_00706 - Bacteriophytochrome cph2, at 772,488 to 774,086 _00706 MIT1002_00707: MIT1002_00707 - Chemotaxis regulator BdlA, at 774,369 to 775,685 _00707 MIT1002_00708: MIT1002_00708 - hypothetical protein, at 775,879 to 776,013 _00708 MIT1002_00709: MIT1002_00709 - Nitrate transport protein NrtA precursor, at 776,256 to 777,665 _00709 Position (kb) 774 775 776Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 773.516 kb on - strand, within MIT1002_00706at 773.516 kb on - strand, within MIT1002_00706at 773.516 kb on - strand, within MIT1002_00706at 773.516 kb on - strand, within MIT1002_00706at 773.523 kb on - strand, within MIT1002_00706at 773.561 kb on - strand, within MIT1002_00706at 773.633 kb on + strand, within MIT1002_00706at 773.641 kb on - strand, within MIT1002_00706at 773.641 kb on - strand, within MIT1002_00706at 773.714 kb on + strand, within MIT1002_00706at 773.726 kb on + strand, within MIT1002_00706at 773.726 kb on + strand, within MIT1002_00706at 773.726 kb on + strand, within MIT1002_00706at 773.726 kb on + strand, within MIT1002_00706at 773.726 kb on + strand, within MIT1002_00706at 773.726 kb on + strand, within MIT1002_00706at 773.734 kb on - strand, within MIT1002_00706at 773.734 kb on - strand, within MIT1002_00706at 773.734 kb on - strand, within MIT1002_00706at 773.734 kb on - strand, within MIT1002_00706at 773.734 kb on - strand, within MIT1002_00706at 773.734 kb on - strand, within MIT1002_00706at 773.744 kb on + strand, within MIT1002_00706at 773.783 kb on + strand, within MIT1002_00706at 773.814 kb on + strand, within MIT1002_00706at 773.814 kb on + strand, within MIT1002_00706at 773.820 kb on - strand, within MIT1002_00706at 773.822 kb on - strand, within MIT1002_00706at 773.822 kb on - strand, within MIT1002_00706at 773.872 kb on - strand, within MIT1002_00706at 773.913 kb on - strand, within MIT1002_00706at 773.923 kb on - strand, within MIT1002_00706at 773.949 kb on + strandat 774.008 kb on + strandat 774.008 kb on + strandat 774.008 kb on + strandat 774.028 kb on - strandat 774.035 kb on - strandat 774.035 kb on - strandat 774.113 kb on + strandat 774.213 kb on - strandat 774.440 kb on + strandat 774.445 kb on + strandat 774.473 kb on - strandat 774.609 kb on + strand, within MIT1002_00707at 774.663 kb on + strand, within MIT1002_00707at 774.703 kb on + strand, within MIT1002_00707at 774.790 kb on + strand, within MIT1002_00707at 774.903 kb on - strand, within MIT1002_00707at 774.941 kb on + strand, within MIT1002_00707at 774.949 kb on - strand, within MIT1002_00707at 774.949 kb on - strand, within MIT1002_00707at 774.959 kb on - strand, within MIT1002_00707at 774.959 kb on - strand, within MIT1002_00707at 774.994 kb on + strand, within MIT1002_00707at 775.010 kb on + strand, within MIT1002_00707at 775.033 kb on - strand, within MIT1002_00707at 775.056 kb on - strand, within MIT1002_00707at 775.063 kb on - strand, within MIT1002_00707at 775.068 kb on - strand, within MIT1002_00707at 775.073 kb on + strand, within MIT1002_00707at 775.081 kb on - strand, within MIT1002_00707at 775.130 kb on + strand, within MIT1002_00707at 775.130 kb on + strand, within MIT1002_00707at 775.195 kb on - strand, within MIT1002_00707at 775.250 kb on + strand, within MIT1002_00707at 775.251 kb on - strand, within MIT1002_00707at 775.251 kb on - strand, within MIT1002_00707at 775.300 kb on + strand, within MIT1002_00707at 775.300 kb on + strand, within MIT1002_00707at 775.388 kb on + strand, within MIT1002_00707at 775.497 kb on - strand, within MIT1002_00707at 775.584 kb on + strandat 775.584 kb on + strandat 775.584 kb on + strandat 775.584 kb on + strandat 775.584 kb on + strandat 775.584 kb on + strandat 775.585 kb on + strandat 775.592 kb on - strandat 775.592 kb on - strandat 775.592 kb on - strandat 775.592 kb on - strandat 775.655 kb on - strandat 775.709 kb on + strandat 775.717 kb on - strandat 775.721 kb on + strandat 775.770 kb on - strandat 775.772 kb on - strandat 775.909 kb on + strand, within MIT1002_00708at 775.909 kb on + strand, within MIT1002_00708at 775.961 kb on - strand, within MIT1002_00708at 775.963 kb on - strand, within MIT1002_00708at 775.963 kb on - strand, within MIT1002_00708at 775.966 kb on + strand, within MIT1002_00708at 775.970 kb on - strand, within MIT1002_00708at 776.102 kb on + strandat 776.114 kb on - strandat 776.151 kb on - strandat 776.190 kb on + strandat 776.207 kb on + strandat 776.305 kb on + strandat 776.311 kb on + strandat 776.317 kb on + strandat 776.320 kb on - strandat 776.386 kb on + strandat 776.436 kb on + strand, within MIT1002_00709at 776.574 kb on + strand, within MIT1002_00709at 776.628 kb on - strand, within MIT1002_00709

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
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773,516 - MIT1002_00706 0.64 -0.3
773,516 - MIT1002_00706 0.64 -0.5
773,516 - MIT1002_00706 0.64 -0.1
773,516 - MIT1002_00706 0.64 +0.7
773,523 - MIT1002_00706 0.65 +0.1
773,561 - MIT1002_00706 0.67 -1.7
773,633 + MIT1002_00706 0.72 +1.0
773,641 - MIT1002_00706 0.72 -2.5
773,641 - MIT1002_00706 0.72 -3.0
773,714 + MIT1002_00706 0.77 +0.2
773,726 + MIT1002_00706 0.77 +0.2
773,726 + MIT1002_00706 0.77 -0.2
773,726 + MIT1002_00706 0.77 +0.7
773,726 + MIT1002_00706 0.77 +0.1
773,726 + MIT1002_00706 0.77 +0.3
773,726 + MIT1002_00706 0.77 -1.5
773,734 - MIT1002_00706 0.78 +2.5
773,734 - MIT1002_00706 0.78 -0.3
773,734 - MIT1002_00706 0.78 -0.2
773,734 - MIT1002_00706 0.78 +1.1
773,734 - MIT1002_00706 0.78 +0.6
773,734 - MIT1002_00706 0.78 -1.2
773,744 + MIT1002_00706 0.79 -0.5
773,783 + MIT1002_00706 0.81 +0.7
773,814 + MIT1002_00706 0.83 +1.2
773,814 + MIT1002_00706 0.83 -1.8
773,820 - MIT1002_00706 0.83 +0.1
773,822 - MIT1002_00706 0.83 +1.0
773,822 - MIT1002_00706 0.83 +0.6
773,872 - MIT1002_00706 0.87 -0.8
773,913 - MIT1002_00706 0.89 -2.0
773,923 - MIT1002_00706 0.90 -0.2
773,949 + +0.0
774,008 + +1.6
774,008 + -0.7
774,008 + +0.7
774,028 - -3.2
774,035 - -0.0
774,035 - +0.8
774,113 + +1.6
774,213 - -0.1
774,440 + -0.8
774,445 + +0.9
774,473 - +0.3
774,609 + MIT1002_00707 0.18 -0.1
774,663 + MIT1002_00707 0.22 +3.2
774,703 + MIT1002_00707 0.25 -0.0
774,790 + MIT1002_00707 0.32 +1.2
774,903 - MIT1002_00707 0.41 -0.2
774,941 + MIT1002_00707 0.43 -1.1
774,949 - MIT1002_00707 0.44 -0.1
774,949 - MIT1002_00707 0.44 +0.8
774,959 - MIT1002_00707 0.45 +1.6
774,959 - MIT1002_00707 0.45 +0.8
774,994 + MIT1002_00707 0.47 -0.8
775,010 + MIT1002_00707 0.49 +1.1
775,033 - MIT1002_00707 0.50 +1.2
775,056 - MIT1002_00707 0.52 -0.5
775,063 - MIT1002_00707 0.53 -1.0
775,068 - MIT1002_00707 0.53 +0.3
775,073 + MIT1002_00707 0.53 -1.3
775,081 - MIT1002_00707 0.54 -2.5
775,130 + MIT1002_00707 0.58 +0.4
775,130 + MIT1002_00707 0.58 +1.7
775,195 - MIT1002_00707 0.63 -1.9
775,250 + MIT1002_00707 0.67 -0.8
775,251 - MIT1002_00707 0.67 -1.7
775,251 - MIT1002_00707 0.67 +0.7
775,300 + MIT1002_00707 0.71 +0.9
775,300 + MIT1002_00707 0.71 -1.4
775,388 + MIT1002_00707 0.77 +0.4
775,497 - MIT1002_00707 0.86 -0.4
775,584 + -1.4
775,584 + +2.2
775,584 + +0.1
775,584 + +0.3
775,584 + -1.0
775,584 + +0.0
775,585 + -0.1
775,592 - -0.5
775,592 - -0.1
775,592 - -0.1
775,592 - -0.5
775,655 - -0.7
775,709 + +0.7
775,717 - +0.7
775,721 + +1.2
775,770 - +0.9
775,772 - +1.5
775,909 + MIT1002_00708 0.22 +0.2
775,909 + MIT1002_00708 0.22 +0.8
775,961 - MIT1002_00708 0.61 +1.1
775,963 - MIT1002_00708 0.62 +0.3
775,963 - MIT1002_00708 0.62 +0.6
775,966 + MIT1002_00708 0.64 +0.7
775,970 - MIT1002_00708 0.67 +0.8
776,102 + -0.3
776,114 - +0.2
776,151 - -2.0
776,190 + -0.0
776,207 + +0.2
776,305 + +0.1
776,311 + -2.9
776,317 + +0.4
776,320 - -0.4
776,386 + +0.3
776,436 + MIT1002_00709 0.13 -0.5
776,574 + MIT1002_00709 0.23 +0.1
776,628 - MIT1002_00709 0.26 +1.6

Or see this region's nucleotide sequence