Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00681 and MIT1002_00682 are separated by 36 nucleotides MIT1002_00682 and MIT1002_00683 are separated by 255 nucleotides MIT1002_00683 and MIT1002_00684 are separated by 623 nucleotides
MIT1002_00681: MIT1002_00681 - L-lysine 2,3-aminomutase, at 744,558 to 745,583
_00681
MIT1002_00682: MIT1002_00682 - Elongation factor P, at 745,620 to 746,189
_00682
MIT1002_00683: MIT1002_00683 - Elongation factor P--(R)-beta-lysine ligase, at 746,445 to 747,518
_00683
MIT1002_00684: MIT1002_00684 - Transposase, at 748,142 to 748,657
_00684
Position (kb) 746
747
748 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 745.508 kb on + strand at 745.547 kb on - strand at 745.589 kb on + strand at 746.204 kb on - strand at 746.241 kb on - strand at 746.390 kb on - strand at 746.435 kb on + strand at 746.450 kb on + strand at 746.493 kb on + strand at 746.494 kb on - strand at 746.539 kb on + strand at 746.539 kb on + strand at 746.562 kb on - strand, within MIT1002_00683 at 746.564 kb on + strand, within MIT1002_00683 at 746.564 kb on + strand, within MIT1002_00683 at 746.572 kb on - strand, within MIT1002_00683 at 746.572 kb on - strand, within MIT1002_00683 at 746.606 kb on + strand, within MIT1002_00683 at 746.609 kb on - strand, within MIT1002_00683 at 746.696 kb on - strand, within MIT1002_00683 at 746.780 kb on - strand, within MIT1002_00683 at 746.866 kb on + strand, within MIT1002_00683 at 746.869 kb on - strand, within MIT1002_00683 at 746.874 kb on - strand, within MIT1002_00683 at 747.041 kb on - strand, within MIT1002_00683 at 747.220 kb on + strand, within MIT1002_00683 at 747.237 kb on + strand, within MIT1002_00683 at 747.244 kb on + strand, within MIT1002_00683 at 747.244 kb on + strand, within MIT1002_00683 at 747.262 kb on - strand, within MIT1002_00683 at 747.359 kb on - strand, within MIT1002_00683 at 747.360 kb on - strand, within MIT1002_00683 at 747.364 kb on + strand, within MIT1002_00683 at 747.374 kb on - strand, within MIT1002_00683 at 747.440 kb on - strand at 747.453 kb on - strand at 747.466 kb on - strand at 747.506 kb on + strand at 747.506 kb on + strand at 747.506 kb on + strand at 747.506 kb on + strand at 747.513 kb on + strand at 747.513 kb on + strand at 747.514 kb on - strand at 747.514 kb on - strand at 747.518 kb on + strand at 747.521 kb on - strand at 747.547 kb on + strand at 747.552 kb on + strand at 747.555 kb on - strand at 747.562 kb on - strand at 747.572 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3 remove 745,508 + -0.7 745,547 - -1.0 745,589 + +0.0 746,204 - -2.8 746,241 - +0.3 746,390 - +0.7 746,435 + +0.6 746,450 + -0.0 746,493 + +0.2 746,494 - -0.4 746,539 + -1.0 746,539 + +1.1 746,562 - MIT1002_00683 0.11 -1.2 746,564 + MIT1002_00683 0.11 -3.3 746,564 + MIT1002_00683 0.11 +1.9 746,572 - MIT1002_00683 0.12 -0.1 746,572 - MIT1002_00683 0.12 -1.7 746,606 + MIT1002_00683 0.15 -1.7 746,609 - MIT1002_00683 0.15 +1.6 746,696 - MIT1002_00683 0.23 -1.0 746,780 - MIT1002_00683 0.31 -0.7 746,866 + MIT1002_00683 0.39 -2.4 746,869 - MIT1002_00683 0.39 -2.2 746,874 - MIT1002_00683 0.40 -0.1 747,041 - MIT1002_00683 0.55 -2.5 747,220 + MIT1002_00683 0.72 -2.4 747,237 + MIT1002_00683 0.74 -2.0 747,244 + MIT1002_00683 0.74 -1.6 747,244 + MIT1002_00683 0.74 +0.6 747,262 - MIT1002_00683 0.76 -2.5 747,359 - MIT1002_00683 0.85 -1.2 747,360 - MIT1002_00683 0.85 -3.4 747,364 + MIT1002_00683 0.86 -1.6 747,374 - MIT1002_00683 0.86 -0.6 747,440 - -0.7 747,453 - -2.4 747,466 - -1.2 747,506 + -2.1 747,506 + +0.3 747,506 + -1.2 747,506 + -0.6 747,513 + -1.8 747,513 + +0.4 747,514 - +0.5 747,514 - +1.6 747,518 + +0.7 747,521 - -0.4 747,547 + -1.5 747,552 + +0.5 747,555 - -1.7 747,562 - -0.4 747,572 - +0.9
Or see this region's nucleotide sequence