Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00633

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00631 and MIT1002_00632 are separated by 5 nucleotidesMIT1002_00632 and MIT1002_00633 are separated by 99 nucleotidesMIT1002_00633 and MIT1002_00634 are separated by 342 nucleotides MIT1002_00631: MIT1002_00631 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 678,612 to 679,373 _00631 MIT1002_00632: MIT1002_00632 - Cell division protein FtsB, at 679,379 to 679,669 _00632 MIT1002_00633: MIT1002_00633 - putative protein involved in outer membrane biogenesis, at 679,769 to 681,484 _00633 MIT1002_00634: MIT1002_00634 - Methyl-accepting chemotaxis protein 4, at 681,827 to 683,449 _00634 Position (kb) 679 680 681 682Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 679.727 kb on - strandat 679.846 kb on - strandat 679.867 kb on + strandat 679.875 kb on - strandat 679.877 kb on + strandat 679.885 kb on + strandat 680.001 kb on + strand, within MIT1002_00633at 680.030 kb on - strand, within MIT1002_00633at 680.044 kb on + strand, within MIT1002_00633at 680.092 kb on + strand, within MIT1002_00633at 680.134 kb on + strand, within MIT1002_00633at 680.142 kb on - strand, within MIT1002_00633at 680.164 kb on - strand, within MIT1002_00633at 680.244 kb on + strand, within MIT1002_00633at 680.254 kb on + strand, within MIT1002_00633at 680.259 kb on + strand, within MIT1002_00633at 680.259 kb on + strand, within MIT1002_00633at 680.262 kb on - strand, within MIT1002_00633at 680.267 kb on - strand, within MIT1002_00633at 680.267 kb on - strand, within MIT1002_00633at 680.267 kb on - strand, within MIT1002_00633at 680.267 kb on - strand, within MIT1002_00633at 680.267 kb on - strand, within MIT1002_00633at 680.301 kb on + strand, within MIT1002_00633at 680.333 kb on + strand, within MIT1002_00633at 680.335 kb on - strand, within MIT1002_00633at 680.341 kb on - strand, within MIT1002_00633at 680.344 kb on + strand, within MIT1002_00633at 680.351 kb on - strand, within MIT1002_00633at 680.427 kb on + strand, within MIT1002_00633at 680.435 kb on - strand, within MIT1002_00633at 680.438 kb on + strand, within MIT1002_00633at 680.438 kb on + strand, within MIT1002_00633at 680.438 kb on + strand, within MIT1002_00633at 680.438 kb on + strand, within MIT1002_00633at 680.446 kb on - strand, within MIT1002_00633at 680.571 kb on + strand, within MIT1002_00633at 680.604 kb on + strand, within MIT1002_00633at 680.627 kb on - strand, within MIT1002_00633at 680.686 kb on + strand, within MIT1002_00633at 680.686 kb on + strand, within MIT1002_00633at 680.686 kb on + strand, within MIT1002_00633at 680.702 kb on - strand, within MIT1002_00633at 680.735 kb on - strand, within MIT1002_00633at 680.745 kb on - strand, within MIT1002_00633at 680.965 kb on - strand, within MIT1002_00633at 681.032 kb on + strand, within MIT1002_00633at 681.144 kb on + strand, within MIT1002_00633at 681.267 kb on + strand, within MIT1002_00633at 681.267 kb on - strand, within MIT1002_00633at 681.277 kb on + strand, within MIT1002_00633at 681.293 kb on - strand, within MIT1002_00633at 681.300 kb on - strand, within MIT1002_00633at 681.343 kb on - strandat 681.348 kb on - strandat 681.348 kb on - strandat 681.372 kb on - strandat 681.459 kb on + strandat 681.459 kb on + strandat 681.467 kb on - strandat 681.467 kb on - strandat 681.469 kb on + strandat 681.475 kb on - strandat 681.521 kb on - strandat 681.538 kb on - strandat 681.550 kb on + strandat 681.550 kb on + strandat 681.550 kb on + strandat 681.552 kb on + strandat 681.595 kb on + strandat 681.603 kb on + strandat 681.613 kb on - strandat 681.637 kb on + strandat 681.652 kb on + strandat 681.653 kb on - strandat 681.740 kb on + strandat 681.740 kb on + strandat 681.750 kb on + strandat 681.784 kb on - strandat 681.796 kb on + strandat 681.804 kb on - strandat 681.832 kb on + strandat 681.832 kb on + strandat 681.832 kb on + strandat 681.840 kb on - strandat 681.881 kb on + strandat 681.931 kb on - strandat 681.933 kb on + strandat 681.933 kb on + strandat 681.936 kb on + strandat 681.945 kb on + strandat 681.945 kb on + strandat 681.951 kb on - strandat 682.072 kb on + strand, within MIT1002_00634at 682.080 kb on - strand, within MIT1002_00634at 682.276 kb on - strand, within MIT1002_00634at 682.352 kb on - strand, within MIT1002_00634at 682.399 kb on + strand, within MIT1002_00634at 682.416 kb on - strand, within MIT1002_00634at 682.425 kb on + strand, within MIT1002_00634at 682.425 kb on + strand, within MIT1002_00634at 682.455 kb on + strand, within MIT1002_00634at 682.463 kb on - strand, within MIT1002_00634

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
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679,727 - +0.2
679,846 - +0.3
679,867 + +0.4
679,875 - -2.4
679,877 + +1.3
679,885 + +0.4
680,001 + MIT1002_00633 0.14 -2.0
680,030 - MIT1002_00633 0.15 -0.2
680,044 + MIT1002_00633 0.16 +1.4
680,092 + MIT1002_00633 0.19 -1.0
680,134 + MIT1002_00633 0.21 -0.3
680,142 - MIT1002_00633 0.22 -0.2
680,164 - MIT1002_00633 0.23 +0.1
680,244 + MIT1002_00633 0.28 -0.1
680,254 + MIT1002_00633 0.28 +2.6
680,259 + MIT1002_00633 0.29 -1.2
680,259 + MIT1002_00633 0.29 +1.0
680,262 - MIT1002_00633 0.29 +1.9
680,267 - MIT1002_00633 0.29 +2.4
680,267 - MIT1002_00633 0.29 -0.1
680,267 - MIT1002_00633 0.29 -0.1
680,267 - MIT1002_00633 0.29 +0.4
680,267 - MIT1002_00633 0.29 +1.2
680,301 + MIT1002_00633 0.31 +0.4
680,333 + MIT1002_00633 0.33 -1.3
680,335 - MIT1002_00633 0.33 -1.7
680,341 - MIT1002_00633 0.33 -2.6
680,344 + MIT1002_00633 0.34 +0.6
680,351 - MIT1002_00633 0.34 -0.4
680,427 + MIT1002_00633 0.38 +0.9
680,435 - MIT1002_00633 0.39 +0.4
680,438 + MIT1002_00633 0.39 -0.6
680,438 + MIT1002_00633 0.39 +1.5
680,438 + MIT1002_00633 0.39 +0.1
680,438 + MIT1002_00633 0.39 +2.9
680,446 - MIT1002_00633 0.39 +1.7
680,571 + MIT1002_00633 0.47 -0.4
680,604 + MIT1002_00633 0.49 +1.7
680,627 - MIT1002_00633 0.50 -1.2
680,686 + MIT1002_00633 0.53 -0.5
680,686 + MIT1002_00633 0.53 -3.4
680,686 + MIT1002_00633 0.53 +0.2
680,702 - MIT1002_00633 0.54 +2.2
680,735 - MIT1002_00633 0.56 +1.0
680,745 - MIT1002_00633 0.57 +0.4
680,965 - MIT1002_00633 0.70 +0.9
681,032 + MIT1002_00633 0.74 -0.0
681,144 + MIT1002_00633 0.80 +0.4
681,267 + MIT1002_00633 0.87 -0.2
681,267 - MIT1002_00633 0.87 -0.7
681,277 + MIT1002_00633 0.88 +1.6
681,293 - MIT1002_00633 0.89 +1.6
681,300 - MIT1002_00633 0.89 +0.2
681,343 - +0.8
681,348 - +2.5
681,348 - +2.6
681,372 - +1.4
681,459 + -0.8
681,459 + -1.0
681,467 - +0.3
681,467 - -2.7
681,469 + +1.0
681,475 - +0.9
681,521 - -0.4
681,538 - -0.1
681,550 + -0.7
681,550 + +0.3
681,550 + +2.6
681,552 + +1.1
681,595 + +0.0
681,603 + +0.5
681,613 - +0.3
681,637 + +0.6
681,652 + +0.5
681,653 - -0.2
681,740 + -0.4
681,740 + +1.4
681,750 + +0.7
681,784 - +0.2
681,796 + -1.0
681,804 - +2.4
681,832 + -0.1
681,832 + -0.0
681,832 + +0.8
681,840 - -1.2
681,881 + -1.8
681,931 - +0.3
681,933 + +2.6
681,933 + +0.3
681,936 + +0.7
681,945 + +2.0
681,945 + -0.7
681,951 - +0.8
682,072 + MIT1002_00634 0.15 -0.2
682,080 - MIT1002_00634 0.16 -0.2
682,276 - MIT1002_00634 0.28 +1.3
682,352 - MIT1002_00634 0.32 -1.2
682,399 + MIT1002_00634 0.35 -1.1
682,416 - MIT1002_00634 0.36 -0.4
682,425 + MIT1002_00634 0.37 -3.4
682,425 + MIT1002_00634 0.37 +0.0
682,455 + MIT1002_00634 0.39 +0.9
682,463 - MIT1002_00634 0.39 +0.3

Or see this region's nucleotide sequence