Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00598

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00597 and MIT1002_00598 are separated by 13 nucleotidesMIT1002_00598 and MIT1002_00599 overlap by 10 nucleotides MIT1002_00597: MIT1002_00597 - Site-specific recombinase XerD, at 646,652 to 648,193 _00597 MIT1002_00598: MIT1002_00598 - hypothetical protein, at 648,207 to 650,120 _00598 MIT1002_00599: MIT1002_00599 - hypothetical protein, at 650,111 to 652,126 _00599 Position (kb) 648 649 650 651Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 647.261 kb on + strand, within MIT1002_00597at 647.261 kb on + strand, within MIT1002_00597at 647.261 kb on + strand, within MIT1002_00597at 647.261 kb on + strand, within MIT1002_00597at 647.261 kb on + strand, within MIT1002_00597at 647.261 kb on + strand, within MIT1002_00597at 647.261 kb on + strand, within MIT1002_00597at 647.269 kb on - strand, within MIT1002_00597at 647.269 kb on - strand, within MIT1002_00597at 647.269 kb on - strand, within MIT1002_00597at 647.269 kb on - strand, within MIT1002_00597at 647.269 kb on - strand, within MIT1002_00597at 647.279 kb on - strand, within MIT1002_00597at 647.287 kb on + strand, within MIT1002_00597at 647.304 kb on + strand, within MIT1002_00597at 647.323 kb on - strand, within MIT1002_00597at 647.365 kb on + strand, within MIT1002_00597at 647.418 kb on + strand, within MIT1002_00597at 647.549 kb on + strand, within MIT1002_00597at 647.549 kb on + strand, within MIT1002_00597at 647.605 kb on + strand, within MIT1002_00597at 647.746 kb on + strand, within MIT1002_00597at 647.746 kb on + strand, within MIT1002_00597at 647.746 kb on + strand, within MIT1002_00597at 647.746 kb on + strand, within MIT1002_00597at 647.754 kb on - strand, within MIT1002_00597at 647.774 kb on - strand, within MIT1002_00597at 647.778 kb on + strand, within MIT1002_00597at 647.784 kb on + strand, within MIT1002_00597at 647.802 kb on + strand, within MIT1002_00597at 647.879 kb on - strand, within MIT1002_00597at 648.031 kb on - strand, within MIT1002_00597at 648.160 kb on + strandat 648.168 kb on - strandat 648.168 kb on - strandat 648.219 kb on + strandat 648.331 kb on - strandat 648.354 kb on + strandat 648.357 kb on - strandat 648.357 kb on - strandat 648.357 kb on - strandat 648.482 kb on + strand, within MIT1002_00598at 648.522 kb on + strand, within MIT1002_00598at 648.530 kb on - strand, within MIT1002_00598at 648.540 kb on + strand, within MIT1002_00598at 648.548 kb on - strand, within MIT1002_00598at 648.548 kb on - strand, within MIT1002_00598at 648.582 kb on + strand, within MIT1002_00598at 648.670 kb on + strand, within MIT1002_00598at 648.837 kb on + strand, within MIT1002_00598at 648.890 kb on + strand, within MIT1002_00598at 648.895 kb on + strand, within MIT1002_00598at 648.898 kb on - strand, within MIT1002_00598at 648.962 kb on + strand, within MIT1002_00598at 649.011 kb on - strand, within MIT1002_00598at 649.023 kb on + strand, within MIT1002_00598at 649.031 kb on - strand, within MIT1002_00598at 649.036 kb on + strand, within MIT1002_00598at 649.051 kb on - strand, within MIT1002_00598at 649.127 kb on - strand, within MIT1002_00598at 649.135 kb on - strand, within MIT1002_00598at 649.191 kb on + strand, within MIT1002_00598at 649.303 kb on + strand, within MIT1002_00598at 649.403 kb on - strand, within MIT1002_00598at 649.610 kb on - strand, within MIT1002_00598at 649.635 kb on - strand, within MIT1002_00598at 649.635 kb on - strand, within MIT1002_00598at 649.701 kb on + strand, within MIT1002_00598at 649.701 kb on + strand, within MIT1002_00598at 649.701 kb on + strand, within MIT1002_00598at 649.709 kb on - strand, within MIT1002_00598at 649.709 kb on - strand, within MIT1002_00598at 649.709 kb on - strand, within MIT1002_00598at 649.709 kb on - strand, within MIT1002_00598at 649.709 kb on - strand, within MIT1002_00598at 649.709 kb on - strand, within MIT1002_00598at 649.709 kb on - strand, within MIT1002_00598at 649.757 kb on - strand, within MIT1002_00598at 649.783 kb on + strand, within MIT1002_00598at 649.791 kb on - strand, within MIT1002_00598at 649.791 kb on - strand, within MIT1002_00598at 649.791 kb on - strand, within MIT1002_00598at 649.874 kb on + strand, within MIT1002_00598at 649.917 kb on + strand, within MIT1002_00598at 649.970 kb on - strandat 650.068 kb on + strandat 650.076 kb on - strandat 650.114 kb on + strandat 650.122 kb on - strandat 650.178 kb on - strandat 650.245 kb on + strandat 650.248 kb on - strandat 650.321 kb on + strand, within MIT1002_00599at 650.399 kb on - strand, within MIT1002_00599at 650.399 kb on - strand, within MIT1002_00599at 650.559 kb on + strand, within MIT1002_00599at 650.567 kb on - strand, within MIT1002_00599at 650.567 kb on - strand, within MIT1002_00599at 650.666 kb on + strand, within MIT1002_00599at 650.666 kb on + strand, within MIT1002_00599at 650.674 kb on - strand, within MIT1002_00599at 650.697 kb on + strand, within MIT1002_00599at 650.829 kb on + strand, within MIT1002_00599at 651.077 kb on - strand, within MIT1002_00599at 651.077 kb on - strand, within MIT1002_00599at 651.077 kb on - strand, within MIT1002_00599at 651.077 kb on - strand, within MIT1002_00599

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
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647,261 + MIT1002_00597 0.39 +0.4
647,261 + MIT1002_00597 0.39 +0.3
647,261 + MIT1002_00597 0.39 -0.2
647,261 + MIT1002_00597 0.39 +0.3
647,261 + MIT1002_00597 0.39 +0.6
647,261 + MIT1002_00597 0.39 +0.8
647,261 + MIT1002_00597 0.39 +0.4
647,269 - MIT1002_00597 0.40 -2.5
647,269 - MIT1002_00597 0.40 +0.6
647,269 - MIT1002_00597 0.40 +1.3
647,269 - MIT1002_00597 0.40 -1.0
647,269 - MIT1002_00597 0.40 -1.9
647,279 - MIT1002_00597 0.41 +0.7
647,287 + MIT1002_00597 0.41 -0.7
647,304 + MIT1002_00597 0.42 -0.0
647,323 - MIT1002_00597 0.44 +1.2
647,365 + MIT1002_00597 0.46 -0.7
647,418 + MIT1002_00597 0.50 +1.3
647,549 + MIT1002_00597 0.58 +0.2
647,549 + MIT1002_00597 0.58 -4.0
647,605 + MIT1002_00597 0.62 -0.1
647,746 + MIT1002_00597 0.71 +1.7
647,746 + MIT1002_00597 0.71 -0.1
647,746 + MIT1002_00597 0.71 +0.3
647,746 + MIT1002_00597 0.71 -0.7
647,754 - MIT1002_00597 0.71 +0.5
647,774 - MIT1002_00597 0.73 +0.5
647,778 + MIT1002_00597 0.73 +0.1
647,784 + MIT1002_00597 0.73 +0.2
647,802 + MIT1002_00597 0.75 +0.2
647,879 - MIT1002_00597 0.80 -1.8
648,031 - MIT1002_00597 0.89 +0.9
648,160 + -2.9
648,168 - -0.1
648,168 - +1.2
648,219 + -2.1
648,331 - +0.3
648,354 + -0.9
648,357 - +0.2
648,357 - +1.4
648,357 - -3.6
648,482 + MIT1002_00598 0.14 +0.3
648,522 + MIT1002_00598 0.16 +2.4
648,530 - MIT1002_00598 0.17 -0.4
648,540 + MIT1002_00598 0.17 -1.2
648,548 - MIT1002_00598 0.18 +0.3
648,548 - MIT1002_00598 0.18 -1.9
648,582 + MIT1002_00598 0.20 +0.2
648,670 + MIT1002_00598 0.24 +0.2
648,837 + MIT1002_00598 0.33 +1.3
648,890 + MIT1002_00598 0.36 -0.0
648,895 + MIT1002_00598 0.36 -2.5
648,898 - MIT1002_00598 0.36 -0.1
648,962 + MIT1002_00598 0.39 +0.4
649,011 - MIT1002_00598 0.42 +0.1
649,023 + MIT1002_00598 0.43 +0.4
649,031 - MIT1002_00598 0.43 +0.1
649,036 + MIT1002_00598 0.43 +1.2
649,051 - MIT1002_00598 0.44 +0.3
649,127 - MIT1002_00598 0.48 +1.5
649,135 - MIT1002_00598 0.48 +0.7
649,191 + MIT1002_00598 0.51 +0.2
649,303 + MIT1002_00598 0.57 -0.8
649,403 - MIT1002_00598 0.62 -0.3
649,610 - MIT1002_00598 0.73 -0.2
649,635 - MIT1002_00598 0.75 +1.7
649,635 - MIT1002_00598 0.75 +1.7
649,701 + MIT1002_00598 0.78 +0.8
649,701 + MIT1002_00598 0.78 +0.0
649,701 + MIT1002_00598 0.78 -0.7
649,709 - MIT1002_00598 0.78 -0.4
649,709 - MIT1002_00598 0.78 -0.7
649,709 - MIT1002_00598 0.78 -0.3
649,709 - MIT1002_00598 0.78 -1.0
649,709 - MIT1002_00598 0.78 +0.7
649,709 - MIT1002_00598 0.78 +0.8
649,709 - MIT1002_00598 0.78 +2.2
649,757 - MIT1002_00598 0.81 -0.4
649,783 + MIT1002_00598 0.82 -0.1
649,791 - MIT1002_00598 0.83 +0.4
649,791 - MIT1002_00598 0.83 -0.1
649,791 - MIT1002_00598 0.83 +0.5
649,874 + MIT1002_00598 0.87 +0.9
649,917 + MIT1002_00598 0.89 -0.9
649,970 - +0.6
650,068 + +1.0
650,076 - -0.4
650,114 + -1.1
650,122 - -1.0
650,178 - +1.1
650,245 + +1.4
650,248 - +0.7
650,321 + MIT1002_00599 0.10 +0.9
650,399 - MIT1002_00599 0.14 +0.8
650,399 - MIT1002_00599 0.14 -1.6
650,559 + MIT1002_00599 0.22 -0.7
650,567 - MIT1002_00599 0.23 -0.3
650,567 - MIT1002_00599 0.23 -1.6
650,666 + MIT1002_00599 0.28 +1.8
650,666 + MIT1002_00599 0.28 -0.2
650,674 - MIT1002_00599 0.28 +1.0
650,697 + MIT1002_00599 0.29 +0.5
650,829 + MIT1002_00599 0.36 -1.8
651,077 - MIT1002_00599 0.48 -2.2
651,077 - MIT1002_00599 0.48 +0.1
651,077 - MIT1002_00599 0.48 +1.2
651,077 - MIT1002_00599 0.48 +0.8

Or see this region's nucleotide sequence