Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00595

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00594 and MIT1002_00595 are separated by 425 nucleotidesMIT1002_00595 and MIT1002_00596 are separated by 178 nucleotidesMIT1002_00596 and MIT1002_00597 are separated by 330 nucleotides MIT1002_00594: MIT1002_00594 - hypothetical protein, at 643,733 to 644,767 _00594 MIT1002_00595: MIT1002_00595 - hypothetical protein, at 645,193 to 645,717 _00595 MIT1002_00596: MIT1002_00596 - putative toxin-antitoxin system antitoxin component, at 645,896 to 646,321 _00596 MIT1002_00597: MIT1002_00597 - Site-specific recombinase XerD, at 646,652 to 648,193 _00597 Position (kb) 645 646Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 644.403 kb on + strand, within MIT1002_00594at 644.403 kb on + strand, within MIT1002_00594at 644.416 kb on + strand, within MIT1002_00594at 644.438 kb on - strand, within MIT1002_00594at 644.466 kb on + strand, within MIT1002_00594at 644.474 kb on - strand, within MIT1002_00594at 644.752 kb on + strandat 644.752 kb on + strandat 644.752 kb on + strandat 644.760 kb on - strandat 644.833 kb on + strandat 644.933 kb on - strandat 644.986 kb on - strandat 644.986 kb on - strandat 644.993 kb on - strandat 645.050 kb on + strandat 645.058 kb on - strandat 645.058 kb on - strandat 645.196 kb on - strandat 645.234 kb on + strandat 645.273 kb on + strand, within MIT1002_00595at 645.273 kb on + strand, within MIT1002_00595at 645.291 kb on + strand, within MIT1002_00595at 645.299 kb on + strand, within MIT1002_00595at 645.300 kb on - strand, within MIT1002_00595at 645.307 kb on - strand, within MIT1002_00595at 645.385 kb on + strand, within MIT1002_00595at 645.388 kb on - strand, within MIT1002_00595at 645.390 kb on + strand, within MIT1002_00595at 645.390 kb on + strand, within MIT1002_00595at 645.390 kb on + strand, within MIT1002_00595at 645.398 kb on - strand, within MIT1002_00595at 645.398 kb on - strand, within MIT1002_00595at 645.403 kb on - strand, within MIT1002_00595at 645.405 kb on + strand, within MIT1002_00595at 645.405 kb on + strand, within MIT1002_00595at 645.413 kb on - strand, within MIT1002_00595at 645.430 kb on - strand, within MIT1002_00595at 645.493 kb on + strand, within MIT1002_00595at 645.501 kb on - strand, within MIT1002_00595at 645.589 kb on + strand, within MIT1002_00595at 645.605 kb on + strand, within MIT1002_00595at 645.640 kb on + strand, within MIT1002_00595at 645.648 kb on - strand, within MIT1002_00595at 645.699 kb on + strandat 645.706 kb on + strandat 645.711 kb on + strandat 645.711 kb on + strandat 645.711 kb on + strandat 645.719 kb on - strandat 645.719 kb on - strandat 645.746 kb on + strandat 645.754 kb on - strandat 645.754 kb on - strandat 645.781 kb on + strandat 645.822 kb on + strandat 645.858 kb on - strandat 645.942 kb on + strand, within MIT1002_00596at 645.988 kb on + strand, within MIT1002_00596at 645.988 kb on + strand, within MIT1002_00596at 645.988 kb on + strand, within MIT1002_00596at 645.996 kb on - strand, within MIT1002_00596at 645.998 kb on + strand, within MIT1002_00596at 646.006 kb on - strand, within MIT1002_00596at 646.051 kb on + strand, within MIT1002_00596at 646.072 kb on - strand, within MIT1002_00596at 646.072 kb on - strand, within MIT1002_00596at 646.108 kb on - strand, within MIT1002_00596at 646.110 kb on - strand, within MIT1002_00596at 646.120 kb on - strand, within MIT1002_00596at 646.123 kb on - strand, within MIT1002_00596at 646.164 kb on + strand, within MIT1002_00596at 646.187 kb on + strand, within MIT1002_00596at 646.245 kb on + strand, within MIT1002_00596at 646.253 kb on - strand, within MIT1002_00596at 646.253 kb on - strand, within MIT1002_00596at 646.263 kb on + strand, within MIT1002_00596at 646.263 kb on + strand, within MIT1002_00596at 646.271 kb on - strand, within MIT1002_00596at 646.303 kb on + strandat 646.387 kb on + strandat 646.387 kb on + strandat 646.394 kb on - strandat 646.458 kb on + strandat 646.468 kb on + strandat 646.490 kb on + strandat 646.491 kb on + strandat 646.501 kb on + strandat 646.509 kb on - strandat 646.550 kb on + strandat 646.550 kb on + strandat 646.575 kb on + strandat 646.583 kb on - strandat 646.583 kb on - strandat 646.583 kb on - strandat 646.583 kb on - strandat 646.583 kb on - strandat 646.590 kb on + strandat 646.598 kb on - strandat 646.687 kb on + strandat 646.687 kb on - strandat 646.702 kb on - strandat 646.711 kb on + strandat 646.713 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
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644,403 + MIT1002_00594 0.65 -2.1
644,403 + MIT1002_00594 0.65 -0.3
644,416 + MIT1002_00594 0.66 -0.9
644,438 - MIT1002_00594 0.68 +1.6
644,466 + MIT1002_00594 0.71 +0.0
644,474 - MIT1002_00594 0.72 -3.2
644,752 + +2.1
644,752 + +0.5
644,752 + -0.4
644,760 - +2.8
644,833 + +0.3
644,933 - +1.2
644,986 - +0.8
644,986 - -0.3
644,993 - -0.2
645,050 + +2.4
645,058 - -0.3
645,058 - -0.1
645,196 - +0.7
645,234 + +1.0
645,273 + MIT1002_00595 0.15 -1.2
645,273 + MIT1002_00595 0.15 -0.6
645,291 + MIT1002_00595 0.19 +0.3
645,299 + MIT1002_00595 0.20 -0.6
645,300 - MIT1002_00595 0.20 +0.4
645,307 - MIT1002_00595 0.22 -0.3
645,385 + MIT1002_00595 0.37 -3.4
645,388 - MIT1002_00595 0.37 -0.7
645,390 + MIT1002_00595 0.38 +0.6
645,390 + MIT1002_00595 0.38 +0.8
645,390 + MIT1002_00595 0.38 -0.1
645,398 - MIT1002_00595 0.39 +0.5
645,398 - MIT1002_00595 0.39 +0.4
645,403 - MIT1002_00595 0.40 +0.0
645,405 + MIT1002_00595 0.40 +2.9
645,405 + MIT1002_00595 0.40 -2.0
645,413 - MIT1002_00595 0.42 -1.7
645,430 - MIT1002_00595 0.45 +0.8
645,493 + MIT1002_00595 0.57 -2.7
645,501 - MIT1002_00595 0.59 +1.6
645,589 + MIT1002_00595 0.75 +0.3
645,605 + MIT1002_00595 0.78 -0.2
645,640 + MIT1002_00595 0.85 +0.9
645,648 - MIT1002_00595 0.87 -0.3
645,699 + -3.3
645,706 + +0.8
645,711 + +0.5
645,711 + +0.5
645,711 + +0.5
645,719 - +1.2
645,719 - -0.5
645,746 + -0.1
645,754 - +0.2
645,754 - -0.8
645,781 + +0.4
645,822 + -0.2
645,858 - -0.4
645,942 + MIT1002_00596 0.11 -2.4
645,988 + MIT1002_00596 0.22 +0.2
645,988 + MIT1002_00596 0.22 +0.9
645,988 + MIT1002_00596 0.22 +0.9
645,996 - MIT1002_00596 0.23 +1.4
645,998 + MIT1002_00596 0.24 -1.6
646,006 - MIT1002_00596 0.26 -2.8
646,051 + MIT1002_00596 0.36 -0.5
646,072 - MIT1002_00596 0.41 +1.5
646,072 - MIT1002_00596 0.41 +0.5
646,108 - MIT1002_00596 0.50 -0.5
646,110 - MIT1002_00596 0.50 +0.1
646,120 - MIT1002_00596 0.53 -0.5
646,123 - MIT1002_00596 0.53 -0.5
646,164 + MIT1002_00596 0.63 +0.6
646,187 + MIT1002_00596 0.68 -0.4
646,245 + MIT1002_00596 0.82 -1.1
646,253 - MIT1002_00596 0.84 +0.5
646,253 - MIT1002_00596 0.84 +1.7
646,263 + MIT1002_00596 0.86 -0.9
646,263 + MIT1002_00596 0.86 +1.0
646,271 - MIT1002_00596 0.88 -0.7
646,303 + -0.6
646,387 + -4.0
646,387 + -0.4
646,394 - +0.8
646,458 + -1.0
646,468 + +0.6
646,490 + +0.9
646,491 + +1.1
646,501 + -0.1
646,509 - +1.1
646,550 + +0.3
646,550 + +0.4
646,575 + +0.8
646,583 - +2.2
646,583 - +0.8
646,583 - -0.1
646,583 - +0.1
646,583 - -2.1
646,590 + +0.2
646,598 - -0.8
646,687 + +0.6
646,687 - +0.2
646,702 - +1.3
646,711 + -2.1
646,713 + +1.4

Or see this region's nucleotide sequence