Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00577

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00576 and MIT1002_00577 are separated by 167 nucleotidesMIT1002_00577 and MIT1002_00578 are separated by 280 nucleotides MIT1002_00576: MIT1002_00576 - Soluble lytic murein transglycosylase precursor, at 621,279 to 623,342 _00576 MIT1002_00577: MIT1002_00577 - Xaa-Pro dipeptidase, at 623,510 to 624,841 _00577 MIT1002_00578: MIT1002_00578 - ZIP Zinc transporter, at 625,122 to 625,838 _00578 Position (kb) 623 624 625Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 622.549 kb on - strand, within MIT1002_00576at 622.554 kb on - strand, within MIT1002_00576at 622.554 kb on - strand, within MIT1002_00576at 622.554 kb on - strand, within MIT1002_00576at 622.570 kb on - strand, within MIT1002_00576at 622.692 kb on - strand, within MIT1002_00576at 622.802 kb on - strand, within MIT1002_00576at 622.918 kb on + strand, within MIT1002_00576at 622.918 kb on + strand, within MIT1002_00576at 622.926 kb on - strand, within MIT1002_00576at 622.948 kb on - strand, within MIT1002_00576at 622.991 kb on + strand, within MIT1002_00576at 622.999 kb on - strand, within MIT1002_00576at 623.027 kb on + strand, within MIT1002_00576at 623.030 kb on - strand, within MIT1002_00576at 623.075 kb on - strand, within MIT1002_00576at 623.106 kb on + strand, within MIT1002_00576at 623.135 kb on - strand, within MIT1002_00576at 623.190 kb on - strandat 623.199 kb on + strandat 623.307 kb on - strandat 623.351 kb on + strandat 623.351 kb on + strandat 623.357 kb on + strandat 623.359 kb on - strandat 623.365 kb on + strandat 623.367 kb on - strandat 623.422 kb on - strandat 623.422 kb on - strandat 623.432 kb on - strandat 623.442 kb on + strandat 623.518 kb on + strandat 623.526 kb on - strandat 623.571 kb on + strandat 623.573 kb on + strandat 623.573 kb on + strandat 623.573 kb on + strandat 623.581 kb on - strandat 623.588 kb on + strandat 623.588 kb on + strandat 623.588 kb on + strandat 623.596 kb on - strandat 623.596 kb on - strandat 623.610 kb on + strandat 623.610 kb on + strandat 623.620 kb on + strandat 623.623 kb on - strandat 623.628 kb on - strandat 623.710 kb on + strand, within MIT1002_00577at 623.712 kb on - strand, within MIT1002_00577at 623.718 kb on - strand, within MIT1002_00577at 623.738 kb on - strand, within MIT1002_00577at 623.738 kb on - strand, within MIT1002_00577at 623.742 kb on - strand, within MIT1002_00577at 623.742 kb on - strand, within MIT1002_00577at 623.834 kb on + strand, within MIT1002_00577at 623.912 kb on - strand, within MIT1002_00577at 623.935 kb on - strand, within MIT1002_00577at 623.945 kb on - strand, within MIT1002_00577at 624.015 kb on - strand, within MIT1002_00577at 624.041 kb on + strand, within MIT1002_00577at 624.100 kb on + strand, within MIT1002_00577at 624.140 kb on + strand, within MIT1002_00577at 624.196 kb on + strand, within MIT1002_00577at 624.301 kb on - strand, within MIT1002_00577at 624.352 kb on - strand, within MIT1002_00577at 624.353 kb on + strand, within MIT1002_00577at 624.356 kb on - strand, within MIT1002_00577at 624.360 kb on + strand, within MIT1002_00577at 624.383 kb on + strand, within MIT1002_00577at 624.396 kb on - strand, within MIT1002_00577at 624.516 kb on + strand, within MIT1002_00577at 624.534 kb on + strand, within MIT1002_00577at 624.582 kb on + strand, within MIT1002_00577at 624.583 kb on + strand, within MIT1002_00577at 624.583 kb on + strand, within MIT1002_00577at 624.604 kb on - strand, within MIT1002_00577at 624.636 kb on + strand, within MIT1002_00577at 624.638 kb on - strand, within MIT1002_00577at 624.665 kb on + strand, within MIT1002_00577at 624.696 kb on + strand, within MIT1002_00577at 624.696 kb on + strand, within MIT1002_00577at 624.696 kb on + strand, within MIT1002_00577at 624.705 kb on - strand, within MIT1002_00577at 624.738 kb on + strandat 624.746 kb on - strandat 624.889 kb on + strandat 624.894 kb on + strandat 624.894 kb on + strandat 624.894 kb on + strandat 624.902 kb on - strandat 624.902 kb on - strandat 624.902 kb on - strandat 625.061 kb on + strandat 625.099 kb on - strandat 625.121 kb on - strandat 625.206 kb on + strand, within MIT1002_00578at 625.220 kb on + strand, within MIT1002_00578at 625.247 kb on - strand, within MIT1002_00578at 625.273 kb on - strand, within MIT1002_00578at 625.294 kb on + strand, within MIT1002_00578at 625.313 kb on - strand, within MIT1002_00578at 625.323 kb on - strand, within MIT1002_00578at 625.323 kb on - strand, within MIT1002_00578at 625.388 kb on - strand, within MIT1002_00578at 625.436 kb on + strand, within MIT1002_00578at 625.517 kb on - strand, within MIT1002_00578at 625.543 kb on + strand, within MIT1002_00578at 625.552 kb on - strand, within MIT1002_00578at 625.552 kb on - strand, within MIT1002_00578at 625.588 kb on + strand, within MIT1002_00578at 625.596 kb on - strand, within MIT1002_00578at 625.625 kb on + strand, within MIT1002_00578at 625.633 kb on - strand, within MIT1002_00578at 625.636 kb on + strand, within MIT1002_00578at 625.675 kb on + strand, within MIT1002_00578at 625.685 kb on - strand, within MIT1002_00578at 625.685 kb on - strand, within MIT1002_00578at 625.685 kb on - strand, within MIT1002_00578at 625.690 kb on + strand, within MIT1002_00578at 625.690 kb on + strand, within MIT1002_00578at 625.690 kb on + strand, within MIT1002_00578at 625.690 kb on + strand, within MIT1002_00578at 625.690 kb on + strand, within MIT1002_00578at 625.690 kb on + strand, within MIT1002_00578at 625.698 kb on - strand, within MIT1002_00578at 625.698 kb on - strand, within MIT1002_00578at 625.698 kb on - strand, within MIT1002_00578at 625.700 kb on - strand, within MIT1002_00578

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
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622,549 - MIT1002_00576 0.62 +0.1
622,554 - MIT1002_00576 0.62 +0.1
622,554 - MIT1002_00576 0.62 -1.2
622,554 - MIT1002_00576 0.62 +0.8
622,570 - MIT1002_00576 0.63 +1.1
622,692 - MIT1002_00576 0.68 -0.9
622,802 - MIT1002_00576 0.74 -1.3
622,918 + MIT1002_00576 0.79 +0.7
622,918 + MIT1002_00576 0.79 -1.7
622,926 - MIT1002_00576 0.80 -1.2
622,948 - MIT1002_00576 0.81 +0.6
622,991 + MIT1002_00576 0.83 +1.3
622,999 - MIT1002_00576 0.83 -0.2
623,027 + MIT1002_00576 0.85 -0.4
623,030 - MIT1002_00576 0.85 +0.8
623,075 - MIT1002_00576 0.87 -0.2
623,106 + MIT1002_00576 0.89 +0.5
623,135 - MIT1002_00576 0.90 +1.1
623,190 - +1.3
623,199 + -0.0
623,307 - +1.0
623,351 + +0.2
623,351 + +1.1
623,357 + -0.8
623,359 - +0.1
623,365 + -0.4
623,367 - -0.2
623,422 - -1.4
623,422 - +0.5
623,432 - +1.4
623,442 + -0.6
623,518 + -0.4
623,526 - -0.3
623,571 + +1.1
623,573 + -0.3
623,573 + -0.7
623,573 + +0.8
623,581 - +1.0
623,588 + +1.5
623,588 + +0.7
623,588 + -0.3
623,596 - -1.0
623,596 - -0.3
623,610 + +0.9
623,610 + +0.5
623,620 + +0.2
623,623 - -0.5
623,628 - -1.4
623,710 + MIT1002_00577 0.15 -1.1
623,712 - MIT1002_00577 0.15 +0.5
623,718 - MIT1002_00577 0.16 +0.6
623,738 - MIT1002_00577 0.17 +0.2
623,738 - MIT1002_00577 0.17 -0.0
623,742 - MIT1002_00577 0.17 +1.0
623,742 - MIT1002_00577 0.17 +1.6
623,834 + MIT1002_00577 0.24 +0.1
623,912 - MIT1002_00577 0.30 +0.3
623,935 - MIT1002_00577 0.32 -0.2
623,945 - MIT1002_00577 0.33 +0.4
624,015 - MIT1002_00577 0.38 +0.7
624,041 + MIT1002_00577 0.40 +0.2
624,100 + MIT1002_00577 0.44 -0.3
624,140 + MIT1002_00577 0.47 +0.7
624,196 + MIT1002_00577 0.52 +0.2
624,301 - MIT1002_00577 0.59 -1.9
624,352 - MIT1002_00577 0.63 -1.0
624,353 + MIT1002_00577 0.63 +0.3
624,356 - MIT1002_00577 0.64 +1.1
624,360 + MIT1002_00577 0.64 -0.4
624,383 + MIT1002_00577 0.66 -0.5
624,396 - MIT1002_00577 0.67 -2.0
624,516 + MIT1002_00577 0.76 +0.5
624,534 + MIT1002_00577 0.77 +0.0
624,582 + MIT1002_00577 0.80 +1.3
624,583 + MIT1002_00577 0.81 +0.4
624,583 + MIT1002_00577 0.81 -2.3
624,604 - MIT1002_00577 0.82 +0.9
624,636 + MIT1002_00577 0.85 -1.6
624,638 - MIT1002_00577 0.85 +2.5
624,665 + MIT1002_00577 0.87 +1.1
624,696 + MIT1002_00577 0.89 -2.0
624,696 + MIT1002_00577 0.89 +0.4
624,696 + MIT1002_00577 0.89 +1.1
624,705 - MIT1002_00577 0.90 -0.7
624,738 + +0.0
624,746 - +0.9
624,889 + +0.8
624,894 + +1.0
624,894 + +1.3
624,894 + -1.3
624,902 - -0.9
624,902 - -0.0
624,902 - -0.2
625,061 + +0.0
625,099 - +0.0
625,121 - +0.2
625,206 + MIT1002_00578 0.12 -1.7
625,220 + MIT1002_00578 0.14 -2.0
625,247 - MIT1002_00578 0.17 -0.2
625,273 - MIT1002_00578 0.21 -0.7
625,294 + MIT1002_00578 0.24 +1.0
625,313 - MIT1002_00578 0.27 -0.8
625,323 - MIT1002_00578 0.28 +1.1
625,323 - MIT1002_00578 0.28 +1.2
625,388 - MIT1002_00578 0.37 +0.6
625,436 + MIT1002_00578 0.44 -1.4
625,517 - MIT1002_00578 0.55 +1.4
625,543 + MIT1002_00578 0.59 -2.1
625,552 - MIT1002_00578 0.60 -1.0
625,552 - MIT1002_00578 0.60 -0.8
625,588 + MIT1002_00578 0.65 +0.1
625,596 - MIT1002_00578 0.66 -2.5
625,625 + MIT1002_00578 0.70 +3.0
625,633 - MIT1002_00578 0.71 -0.2
625,636 + MIT1002_00578 0.72 +0.4
625,675 + MIT1002_00578 0.77 -1.2
625,685 - MIT1002_00578 0.79 +1.8
625,685 - MIT1002_00578 0.79 -1.2
625,685 - MIT1002_00578 0.79 +2.0
625,690 + MIT1002_00578 0.79 +0.6
625,690 + MIT1002_00578 0.79 +0.5
625,690 + MIT1002_00578 0.79 -3.2
625,690 + MIT1002_00578 0.79 -1.4
625,690 + MIT1002_00578 0.79 -0.9
625,690 + MIT1002_00578 0.79 -0.7
625,698 - MIT1002_00578 0.80 +0.0
625,698 - MIT1002_00578 0.80 -1.8
625,698 - MIT1002_00578 0.80 +1.0
625,700 - MIT1002_00578 0.81 +1.3

Or see this region's nucleotide sequence