Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00574 and MIT1002_00575 are separated by 18 nucleotides MIT1002_00575 and MIT1002_00576 are separated by 495 nucleotides
MIT1002_00574: MIT1002_00574 - 3-ketoacyl-CoA thiolase, at 617,451 to 618,614
_00574
MIT1002_00575: MIT1002_00575 - Fatty acid oxidation complex subunit alpha, at 618,633 to 620,783
_00575
MIT1002_00576: MIT1002_00576 - Soluble lytic murein transglycosylase precursor, at 621,279 to 623,342
_00576
Position (kb) 618
619
620
621 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 617.644 kb on - strand, within MIT1002_00574 at 617.649 kb on - strand, within MIT1002_00574 at 617.667 kb on - strand, within MIT1002_00574 at 617.689 kb on + strand, within MIT1002_00574 at 617.705 kb on + strand, within MIT1002_00574 at 617.773 kb on + strand, within MIT1002_00574 at 617.828 kb on + strand, within MIT1002_00574 at 617.834 kb on + strand, within MIT1002_00574 at 617.836 kb on - strand, within MIT1002_00574 at 617.884 kb on + strand, within MIT1002_00574 at 617.884 kb on + strand, within MIT1002_00574 at 617.884 kb on + strand, within MIT1002_00574 at 617.892 kb on - strand, within MIT1002_00574 at 617.892 kb on - strand, within MIT1002_00574 at 617.892 kb on - strand, within MIT1002_00574 at 617.892 kb on - strand, within MIT1002_00574 at 617.902 kb on - strand, within MIT1002_00574 at 617.932 kb on + strand, within MIT1002_00574 at 617.934 kb on + strand, within MIT1002_00574 at 617.934 kb on + strand, within MIT1002_00574 at 617.942 kb on - strand, within MIT1002_00574 at 617.989 kb on + strand, within MIT1002_00574 at 618.033 kb on + strand, within MIT1002_00574 at 618.044 kb on + strand, within MIT1002_00574 at 618.074 kb on + strand, within MIT1002_00574 at 618.075 kb on - strand, within MIT1002_00574 at 618.118 kb on + strand, within MIT1002_00574 at 618.131 kb on + strand, within MIT1002_00574 at 618.166 kb on + strand, within MIT1002_00574 at 618.166 kb on + strand, within MIT1002_00574 at 618.174 kb on - strand, within MIT1002_00574 at 618.201 kb on - strand, within MIT1002_00574 at 618.206 kb on - strand, within MIT1002_00574 at 618.250 kb on + strand, within MIT1002_00574 at 618.257 kb on + strand, within MIT1002_00574 at 618.343 kb on + strand, within MIT1002_00574 at 618.365 kb on + strand, within MIT1002_00574 at 618.373 kb on - strand, within MIT1002_00574 at 618.422 kb on - strand, within MIT1002_00574 at 618.437 kb on + strand, within MIT1002_00574 at 618.437 kb on + strand, within MIT1002_00574 at 618.437 kb on + strand, within MIT1002_00574 at 618.445 kb on - strand, within MIT1002_00574 at 618.447 kb on + strand, within MIT1002_00574 at 618.450 kb on - strand, within MIT1002_00574 at 618.487 kb on + strand, within MIT1002_00574 at 618.487 kb on + strand, within MIT1002_00574 at 618.489 kb on - strand, within MIT1002_00574 at 618.508 kb on + strand at 618.510 kb on + strand at 618.531 kb on - strand at 618.531 kb on - strand at 618.570 kb on + strand at 618.570 kb on + strand at 618.570 kb on + strand at 618.570 kb on + strand at 618.578 kb on - strand at 618.578 kb on - strand at 618.578 kb on - strand at 618.580 kb on - strand at 618.580 kb on - strand at 618.580 kb on - strand at 618.791 kb on + strand at 618.791 kb on + strand at 618.799 kb on - strand at 618.818 kb on - strand at 618.848 kb on + strand, within MIT1002_00575 at 618.848 kb on + strand, within MIT1002_00575 at 618.885 kb on + strand, within MIT1002_00575 at 618.904 kb on - strand, within MIT1002_00575 at 618.908 kb on - strand, within MIT1002_00575 at 618.973 kb on + strand, within MIT1002_00575 at 618.973 kb on + strand, within MIT1002_00575 at 618.981 kb on - strand, within MIT1002_00575 at 618.995 kb on + strand, within MIT1002_00575 at 619.003 kb on - strand, within MIT1002_00575 at 619.018 kb on + strand, within MIT1002_00575 at 619.037 kb on - strand, within MIT1002_00575 at 619.037 kb on - strand, within MIT1002_00575 at 619.051 kb on + strand, within MIT1002_00575 at 619.054 kb on - strand, within MIT1002_00575 at 619.059 kb on - strand, within MIT1002_00575 at 619.061 kb on + strand, within MIT1002_00575 at 619.069 kb on - strand, within MIT1002_00575 at 619.077 kb on + strand, within MIT1002_00575 at 619.118 kb on + strand, within MIT1002_00575 at 619.300 kb on - strand, within MIT1002_00575 at 619.313 kb on + strand, within MIT1002_00575 at 619.339 kb on - strand, within MIT1002_00575 at 619.367 kb on + strand, within MIT1002_00575 at 619.423 kb on - strand, within MIT1002_00575 at 619.423 kb on - strand, within MIT1002_00575 at 619.431 kb on + strand, within MIT1002_00575 at 619.446 kb on - strand, within MIT1002_00575 at 619.453 kb on + strand, within MIT1002_00575 at 619.457 kb on + strand, within MIT1002_00575 at 619.457 kb on + strand, within MIT1002_00575 at 619.528 kb on + strand, within MIT1002_00575 at 619.541 kb on - strand, within MIT1002_00575 at 619.550 kb on + strand, within MIT1002_00575 at 619.557 kb on + strand, within MIT1002_00575 at 619.615 kb on + strand, within MIT1002_00575 at 619.622 kb on + strand, within MIT1002_00575 at 619.622 kb on + strand, within MIT1002_00575 at 619.622 kb on + strand, within MIT1002_00575 at 619.630 kb on - strand, within MIT1002_00575 at 619.630 kb on - strand, within MIT1002_00575 at 619.651 kb on - strand, within MIT1002_00575 at 619.660 kb on + strand, within MIT1002_00575 at 619.686 kb on + strand, within MIT1002_00575 at 619.730 kb on + strand, within MIT1002_00575 at 619.731 kb on + strand, within MIT1002_00575 at 619.781 kb on - strand, within MIT1002_00575 at 619.781 kb on - strand, within MIT1002_00575 at 619.791 kb on - strand, within MIT1002_00575 at 619.817 kb on - strand, within MIT1002_00575 at 619.821 kb on + strand, within MIT1002_00575 at 619.821 kb on + strand, within MIT1002_00575 at 619.829 kb on - strand, within MIT1002_00575 at 619.831 kb on + strand, within MIT1002_00575 at 619.831 kb on + strand, within MIT1002_00575 at 619.839 kb on - strand, within MIT1002_00575 at 619.839 kb on - strand, within MIT1002_00575 at 619.949 kb on + strand, within MIT1002_00575 at 619.989 kb on + strand, within MIT1002_00575 at 619.989 kb on + strand, within MIT1002_00575 at 619.989 kb on + strand, within MIT1002_00575 at 619.989 kb on + strand, within MIT1002_00575 at 619.997 kb on - strand, within MIT1002_00575 at 619.997 kb on - strand, within MIT1002_00575 at 619.997 kb on - strand, within MIT1002_00575 at 620.014 kb on + strand, within MIT1002_00575 at 620.022 kb on - strand, within MIT1002_00575 at 620.035 kb on + strand, within MIT1002_00575 at 620.038 kb on + strand, within MIT1002_00575 at 620.038 kb on + strand, within MIT1002_00575 at 620.038 kb on + strand, within MIT1002_00575 at 620.046 kb on - strand, within MIT1002_00575 at 620.046 kb on - strand, within MIT1002_00575 at 620.046 kb on - strand, within MIT1002_00575 at 620.046 kb on - strand, within MIT1002_00575 at 620.070 kb on + strand, within MIT1002_00575 at 620.070 kb on + strand, within MIT1002_00575 at 620.078 kb on - strand, within MIT1002_00575 at 620.078 kb on - strand, within MIT1002_00575 at 620.078 kb on - strand, within MIT1002_00575 at 620.080 kb on + strand, within MIT1002_00575 at 620.080 kb on + strand, within MIT1002_00575 at 620.080 kb on + strand, within MIT1002_00575 at 620.080 kb on + strand, within MIT1002_00575 at 620.080 kb on + strand, within MIT1002_00575 at 620.080 kb on + strand, within MIT1002_00575 at 620.080 kb on + strand, within MIT1002_00575 at 620.091 kb on + strand, within MIT1002_00575 at 620.091 kb on + strand, within MIT1002_00575 at 620.168 kb on - strand, within MIT1002_00575 at 620.286 kb on - strand, within MIT1002_00575 at 620.286 kb on - strand, within MIT1002_00575 at 620.289 kb on + strand, within MIT1002_00575 at 620.301 kb on + strand, within MIT1002_00575 at 620.447 kb on - strand, within MIT1002_00575 at 620.472 kb on + strand, within MIT1002_00575 at 620.481 kb on - strand, within MIT1002_00575 at 620.504 kb on - strand, within MIT1002_00575 at 620.504 kb on - strand, within MIT1002_00575 at 620.504 kb on - strand, within MIT1002_00575 at 620.534 kb on + strand, within MIT1002_00575 at 620.610 kb on + strand at 620.610 kb on + strand at 620.610 kb on + strand at 620.610 kb on + strand at 620.610 kb on + strand at 620.615 kb on + strand at 620.618 kb on - strand at 620.618 kb on - strand at 620.618 kb on - strand at 620.618 kb on - strand at 620.622 kb on + strand at 620.622 kb on + strand at 620.630 kb on - strand at 620.678 kb on - strand at 620.771 kb on - strand at 620.781 kb on - strand at 620.861 kb on + strand at 620.861 kb on + strand at 621.078 kb on + strand at 621.086 kb on - strand at 621.086 kb on - strand at 621.090 kb on + strand at 621.174 kb on - strand at 621.245 kb on - strand at 621.253 kb on + strand at 621.263 kb on + strand at 621.263 kb on + strand at 621.263 kb on + strand at 621.263 kb on + strand at 621.263 kb on + strand at 621.263 kb on + strand at 621.263 kb on + strand at 621.271 kb on + strand at 621.271 kb on + strand at 621.271 kb on + strand at 621.271 kb on + strand at 621.271 kb on - strand at 621.271 kb on - strand at 621.271 kb on - strand at 621.271 kb on - strand at 621.279 kb on - strand at 621.279 kb on - strand at 621.279 kb on - strand at 621.413 kb on + strand at 621.413 kb on + strand at 621.415 kb on + strand at 621.421 kb on - strand at 621.421 kb on - strand at 621.421 kb on - strand at 621.421 kb on - strand at 621.423 kb on - strand at 621.426 kb on + strand at 621.556 kb on - strand, within MIT1002_00576 at 621.563 kb on + strand, within MIT1002_00576 at 621.569 kb on + strand, within MIT1002_00576 at 621.650 kb on + strand, within MIT1002_00576 at 621.652 kb on + strand, within MIT1002_00576 at 621.652 kb on + strand, within MIT1002_00576 at 621.660 kb on - strand, within MIT1002_00576 at 621.683 kb on - strand, within MIT1002_00576 at 621.727 kb on - strand, within MIT1002_00576 at 621.744 kb on + strand, within MIT1002_00576 at 621.744 kb on + strand, within MIT1002_00576 at 621.752 kb on - strand, within MIT1002_00576 at 621.772 kb on - strand, within MIT1002_00576
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3 remove 617,644 - MIT1002_00574 0.17 -0.1 617,649 - MIT1002_00574 0.17 +0.7 617,667 - MIT1002_00574 0.19 -2.2 617,689 + MIT1002_00574 0.20 -0.2 617,705 + MIT1002_00574 0.22 +0.5 617,773 + MIT1002_00574 0.28 +0.0 617,828 + MIT1002_00574 0.32 -0.4 617,834 + MIT1002_00574 0.33 -1.0 617,836 - MIT1002_00574 0.33 +1.9 617,884 + MIT1002_00574 0.37 -0.1 617,884 + MIT1002_00574 0.37 +1.6 617,884 + MIT1002_00574 0.37 -0.5 617,892 - MIT1002_00574 0.38 -1.0 617,892 - MIT1002_00574 0.38 -1.1 617,892 - MIT1002_00574 0.38 +1.1 617,892 - MIT1002_00574 0.38 -0.1 617,902 - MIT1002_00574 0.39 -1.4 617,932 + MIT1002_00574 0.41 -1.6 617,934 + MIT1002_00574 0.41 -0.4 617,934 + MIT1002_00574 0.41 +1.1 617,942 - MIT1002_00574 0.42 +0.1 617,989 + MIT1002_00574 0.46 -0.1 618,033 + MIT1002_00574 0.50 -2.5 618,044 + MIT1002_00574 0.51 +1.9 618,074 + MIT1002_00574 0.54 -0.6 618,075 - MIT1002_00574 0.54 -0.8 618,118 + MIT1002_00574 0.57 -1.4 618,131 + MIT1002_00574 0.58 -0.2 618,166 + MIT1002_00574 0.61 +0.2 618,166 + MIT1002_00574 0.61 +0.3 618,174 - MIT1002_00574 0.62 +0.3 618,201 - MIT1002_00574 0.64 +1.2 618,206 - MIT1002_00574 0.65 -0.8 618,250 + MIT1002_00574 0.69 +1.1 618,257 + MIT1002_00574 0.69 -2.9 618,343 + MIT1002_00574 0.77 -0.7 618,365 + MIT1002_00574 0.79 -0.5 618,373 - MIT1002_00574 0.79 +0.1 618,422 - MIT1002_00574 0.83 +1.2 618,437 + MIT1002_00574 0.85 +0.2 618,437 + MIT1002_00574 0.85 +1.0 618,437 + MIT1002_00574 0.85 -0.5 618,445 - MIT1002_00574 0.85 -0.9 618,447 + MIT1002_00574 0.86 +1.4 618,450 - MIT1002_00574 0.86 -0.6 618,487 + MIT1002_00574 0.89 -2.2 618,487 + MIT1002_00574 0.89 -2.4 618,489 - MIT1002_00574 0.89 +1.8 618,508 + +0.2 618,510 + -0.3 618,531 - +2.6 618,531 - -1.2 618,570 + -2.9 618,570 + -3.0 618,570 + -1.1 618,570 + -1.6 618,578 - +0.5 618,578 - +0.1 618,578 - +1.4 618,580 - -0.0 618,580 - -0.3 618,580 - -0.1 618,791 + -0.4 618,791 + +0.4 618,799 - -0.4 618,818 - +0.1 618,848 + MIT1002_00575 0.10 +1.6 618,848 + MIT1002_00575 0.10 -0.2 618,885 + MIT1002_00575 0.12 -0.4 618,904 - MIT1002_00575 0.13 +0.1 618,908 - MIT1002_00575 0.13 +0.9 618,973 + MIT1002_00575 0.16 +1.6 618,973 + MIT1002_00575 0.16 -2.0 618,981 - MIT1002_00575 0.16 -1.7 618,995 + MIT1002_00575 0.17 -0.5 619,003 - MIT1002_00575 0.17 +0.2 619,018 + MIT1002_00575 0.18 -2.9 619,037 - MIT1002_00575 0.19 -0.3 619,037 - MIT1002_00575 0.19 -0.1 619,051 + MIT1002_00575 0.19 -0.2 619,054 - MIT1002_00575 0.20 -0.1 619,059 - MIT1002_00575 0.20 -0.6 619,061 + MIT1002_00575 0.20 -1.7 619,069 - MIT1002_00575 0.20 -1.2 619,077 + MIT1002_00575 0.21 -3.3 619,118 + MIT1002_00575 0.23 -0.3 619,300 - MIT1002_00575 0.31 -2.2 619,313 + MIT1002_00575 0.32 -2.0 619,339 - MIT1002_00575 0.33 -1.7 619,367 + MIT1002_00575 0.34 -3.3 619,423 - MIT1002_00575 0.37 -2.4 619,423 - MIT1002_00575 0.37 -1.4 619,431 + MIT1002_00575 0.37 -2.4 619,446 - MIT1002_00575 0.38 -1.8 619,453 + MIT1002_00575 0.38 -1.4 619,457 + MIT1002_00575 0.38 -4.4 619,457 + MIT1002_00575 0.38 -2.3 619,528 + MIT1002_00575 0.42 -2.2 619,541 - MIT1002_00575 0.42 -1.1 619,550 + MIT1002_00575 0.43 -1.5 619,557 + MIT1002_00575 0.43 -1.0 619,615 + MIT1002_00575 0.46 -1.3 619,622 + MIT1002_00575 0.46 -1.4 619,622 + MIT1002_00575 0.46 -0.7 619,622 + MIT1002_00575 0.46 -1.3 619,630 - MIT1002_00575 0.46 -1.7 619,630 - MIT1002_00575 0.46 -0.4 619,651 - MIT1002_00575 0.47 -0.7 619,660 + MIT1002_00575 0.48 -1.4 619,686 + MIT1002_00575 0.49 -1.6 619,730 + MIT1002_00575 0.51 +1.4 619,731 + MIT1002_00575 0.51 -1.3 619,781 - MIT1002_00575 0.53 -3.0 619,781 - MIT1002_00575 0.53 +0.4 619,791 - MIT1002_00575 0.54 -0.8 619,817 - MIT1002_00575 0.55 +1.0 619,821 + MIT1002_00575 0.55 -3.1 619,821 + MIT1002_00575 0.55 -3.2 619,829 - MIT1002_00575 0.56 +0.6 619,831 + MIT1002_00575 0.56 -1.1 619,831 + MIT1002_00575 0.56 -2.0 619,839 - MIT1002_00575 0.56 +0.7 619,839 - MIT1002_00575 0.56 +0.5 619,949 + MIT1002_00575 0.61 -1.2 619,989 + MIT1002_00575 0.63 -4.5 619,989 + MIT1002_00575 0.63 -4.9 619,989 + MIT1002_00575 0.63 -0.4 619,989 + MIT1002_00575 0.63 -3.2 619,997 - MIT1002_00575 0.63 -6.2 619,997 - MIT1002_00575 0.63 -1.7 619,997 - MIT1002_00575 0.63 -2.5 620,014 + MIT1002_00575 0.64 -4.4 620,022 - MIT1002_00575 0.65 -4.9 620,035 + MIT1002_00575 0.65 -1.0 620,038 + MIT1002_00575 0.65 -4.9 620,038 + MIT1002_00575 0.65 -3.6 620,038 + MIT1002_00575 0.65 -4.1 620,046 - MIT1002_00575 0.66 -5.8 620,046 - MIT1002_00575 0.66 -6.8 620,046 - MIT1002_00575 0.66 -4.8 620,046 - MIT1002_00575 0.66 -4.5 620,070 + MIT1002_00575 0.67 -2.6 620,070 + MIT1002_00575 0.67 -2.0 620,078 - MIT1002_00575 0.67 -4.9 620,078 - MIT1002_00575 0.67 -5.2 620,078 - MIT1002_00575 0.67 -3.1 620,080 + MIT1002_00575 0.67 -3.7 620,080 + MIT1002_00575 0.67 -3.8 620,080 + MIT1002_00575 0.67 -3.8 620,080 + MIT1002_00575 0.67 -4.6 620,080 + MIT1002_00575 0.67 -2.3 620,080 + MIT1002_00575 0.67 -3.3 620,080 + MIT1002_00575 0.67 -4.4 620,091 + MIT1002_00575 0.68 -1.9 620,091 + MIT1002_00575 0.68 -5.6 620,168 - MIT1002_00575 0.71 -4.8 620,286 - MIT1002_00575 0.77 -3.9 620,286 - MIT1002_00575 0.77 -3.1 620,289 + MIT1002_00575 0.77 -3.4 620,301 + MIT1002_00575 0.78 -2.6 620,447 - MIT1002_00575 0.84 -3.9 620,472 + MIT1002_00575 0.85 -3.7 620,481 - MIT1002_00575 0.86 -1.6 620,504 - MIT1002_00575 0.87 -3.3 620,504 - MIT1002_00575 0.87 -5.5 620,504 - MIT1002_00575 0.87 -1.6 620,534 + MIT1002_00575 0.88 -5.3 620,610 + -0.8 620,610 + -3.9 620,610 + -3.2 620,610 + -2.6 620,610 + -2.2 620,615 + -4.1 620,618 - -3.7 620,618 - -4.1 620,618 - -4.5 620,618 - -4.6 620,622 + -0.7 620,622 + -4.0 620,630 - -2.3 620,678 - -5.4 620,771 - -4.0 620,781 - -2.5 620,861 + -0.9 620,861 + -2.5 621,078 + +0.7 621,086 - +0.4 621,086 - -0.2 621,090 + +0.3 621,174 - +0.1 621,245 - -1.4 621,253 + -2.3 621,263 + +0.1 621,263 + +0.0 621,263 + -0.5 621,263 + +0.3 621,263 + -0.1 621,263 + +3.5 621,263 + -0.9 621,271 + +0.1 621,271 + -0.2 621,271 + +0.9 621,271 + +2.6 621,271 - -0.4 621,271 - +0.2 621,271 - -1.3 621,271 - -0.3 621,279 - +0.7 621,279 - +0.5 621,279 - +2.0 621,413 + -2.4 621,413 + -0.4 621,415 + +0.1 621,421 - +0.2 621,421 - +0.8 621,421 - +0.2 621,421 - +0.0 621,423 - +0.3 621,426 + -1.1 621,556 - MIT1002_00576 0.13 +0.5 621,563 + MIT1002_00576 0.14 -1.8 621,569 + MIT1002_00576 0.14 +0.1 621,650 + MIT1002_00576 0.18 +0.4 621,652 + MIT1002_00576 0.18 +0.9 621,652 + MIT1002_00576 0.18 -2.7 621,660 - MIT1002_00576 0.18 +0.8 621,683 - MIT1002_00576 0.20 -1.5 621,727 - MIT1002_00576 0.22 +0.3 621,744 + MIT1002_00576 0.23 +0.4 621,744 + MIT1002_00576 0.23 -1.7 621,752 - MIT1002_00576 0.23 -0.8 621,772 - MIT1002_00576 0.24 -0.1
Or see this region's nucleotide sequence