Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00553 and MIT1002_00554 are separated by 171 nucleotides MIT1002_00554 and MIT1002_00555 are separated by 76 nucleotides MIT1002_00555 and MIT1002_00556 are separated by 24 nucleotides MIT1002_00556 and MIT1002_00557 are separated by 52 nucleotides
MIT1002_00553: MIT1002_00553 - Serine hydroxymethyltransferase 2, at 601,844 to 603,100
_00553
MIT1002_00554: MIT1002_00554 - HTH-type transcriptional regulator YofA, at 603,272 to 604,129
_00554
MIT1002_00555: MIT1002_00555 - putative alkylphosphonate utilization operon protein PhnA, at 604,206 to 604,535
_00555
MIT1002_00556: MIT1002_00556 - putative N-acetyltransferase YsnE, at 604,560 to 605,015
_00556
MIT1002_00557: MIT1002_00557 - ribosomal-protein-alanine acetyltransferase, at 605,068 to 605,526
_00557
Position (kb) 603
604
605 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 602.388 kb on - strand, within MIT1002_00553 at 602.464 kb on - strand, within MIT1002_00553 at 602.488 kb on - strand, within MIT1002_00553 at 602.515 kb on + strand, within MIT1002_00553 at 602.523 kb on - strand, within MIT1002_00553 at 602.699 kb on + strand, within MIT1002_00553 at 602.704 kb on + strand, within MIT1002_00553 at 602.714 kb on + strand, within MIT1002_00553 at 602.723 kb on - strand, within MIT1002_00553 at 602.734 kb on + strand, within MIT1002_00553 at 602.766 kb on + strand, within MIT1002_00553 at 602.766 kb on + strand, within MIT1002_00553 at 602.766 kb on + strand, within MIT1002_00553 at 602.811 kb on + strand, within MIT1002_00553 at 602.811 kb on + strand, within MIT1002_00553 at 602.811 kb on + strand, within MIT1002_00553 at 602.819 kb on - strand, within MIT1002_00553 at 602.850 kb on + strand, within MIT1002_00553 at 602.880 kb on + strand, within MIT1002_00553 at 602.935 kb on - strand, within MIT1002_00553 at 602.965 kb on - strand, within MIT1002_00553 at 602.966 kb on + strand, within MIT1002_00553 at 603.007 kb on + strand at 603.011 kb on + strand at 603.019 kb on - strand at 603.098 kb on - strand at 603.142 kb on - strand at 603.221 kb on + strand at 603.229 kb on - strand at 603.254 kb on + strand at 603.257 kb on + strand at 603.260 kb on - strand at 603.267 kb on - strand at 603.312 kb on + strand at 603.342 kb on + strand at 603.350 kb on - strand at 603.451 kb on + strand, within MIT1002_00554 at 603.454 kb on - strand, within MIT1002_00554 at 603.490 kb on - strand, within MIT1002_00554 at 603.511 kb on + strand, within MIT1002_00554 at 603.540 kb on - strand, within MIT1002_00554 at 603.568 kb on - strand, within MIT1002_00554 at 603.568 kb on - strand, within MIT1002_00554 at 603.614 kb on + strand, within MIT1002_00554 at 603.682 kb on + strand, within MIT1002_00554 at 603.780 kb on - strand, within MIT1002_00554 at 603.804 kb on + strand, within MIT1002_00554 at 603.804 kb on + strand, within MIT1002_00554 at 603.814 kb on + strand, within MIT1002_00554 at 603.868 kb on + strand, within MIT1002_00554 at 603.899 kb on + strand, within MIT1002_00554 at 603.906 kb on - strand, within MIT1002_00554 at 603.907 kb on - strand, within MIT1002_00554 at 603.922 kb on - strand, within MIT1002_00554 at 603.955 kb on - strand, within MIT1002_00554 at 603.960 kb on - strand, within MIT1002_00554 at 603.984 kb on + strand, within MIT1002_00554 at 603.992 kb on - strand, within MIT1002_00554 at 603.997 kb on - strand, within MIT1002_00554 at 604.157 kb on + strand at 604.239 kb on + strand, within MIT1002_00555 at 604.258 kb on + strand, within MIT1002_00555 at 604.302 kb on + strand, within MIT1002_00555 at 604.415 kb on - strand, within MIT1002_00555 at 604.427 kb on + strand, within MIT1002_00555 at 604.435 kb on - strand, within MIT1002_00555 at 604.453 kb on + strand, within MIT1002_00555 at 604.625 kb on + strand, within MIT1002_00556 at 604.708 kb on - strand, within MIT1002_00556 at 604.765 kb on + strand, within MIT1002_00556 at 604.765 kb on + strand, within MIT1002_00556 at 604.766 kb on - strand, within MIT1002_00556 at 604.773 kb on - strand, within MIT1002_00556 at 604.773 kb on - strand, within MIT1002_00556 at 604.773 kb on - strand, within MIT1002_00556 at 604.814 kb on + strand, within MIT1002_00556 at 604.923 kb on + strand, within MIT1002_00556 at 605.018 kb on + strand at 605.018 kb on + strand at 605.025 kb on + strand at 605.036 kb on + strand at 605.036 kb on + strand at 605.039 kb on - strand at 605.072 kb on - strand at 605.082 kb on - strand at 605.082 kb on - strand at 605.082 kb on - strand at 605.088 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3 remove 602,388 - MIT1002_00553 0.43 -0.6 602,464 - MIT1002_00553 0.49 -0.1 602,488 - MIT1002_00553 0.51 +2.1 602,515 + MIT1002_00553 0.53 -0.6 602,523 - MIT1002_00553 0.54 +1.6 602,699 + MIT1002_00553 0.68 +0.3 602,704 + MIT1002_00553 0.68 +2.2 602,714 + MIT1002_00553 0.69 -0.2 602,723 - MIT1002_00553 0.70 +0.2 602,734 + MIT1002_00553 0.71 +0.7 602,766 + MIT1002_00553 0.73 -0.0 602,766 + MIT1002_00553 0.73 -0.6 602,766 + MIT1002_00553 0.73 +0.3 602,811 + MIT1002_00553 0.77 -0.6 602,811 + MIT1002_00553 0.77 +0.9 602,811 + MIT1002_00553 0.77 +1.0 602,819 - MIT1002_00553 0.78 -0.7 602,850 + MIT1002_00553 0.80 -1.1 602,880 + MIT1002_00553 0.82 -1.1 602,935 - MIT1002_00553 0.87 +2.2 602,965 - MIT1002_00553 0.89 +0.7 602,966 + MIT1002_00553 0.89 +1.3 603,007 + -0.4 603,011 + -0.7 603,019 - -0.7 603,098 - +0.4 603,142 - -0.0 603,221 + -1.7 603,229 - +0.3 603,254 + +0.2 603,257 + +0.8 603,260 - -3.0 603,267 - +1.2 603,312 + -1.3 603,342 + +0.6 603,350 - -0.7 603,451 + MIT1002_00554 0.21 -1.8 603,454 - MIT1002_00554 0.21 +1.0 603,490 - MIT1002_00554 0.25 +1.0 603,511 + MIT1002_00554 0.28 +2.1 603,540 - MIT1002_00554 0.31 +1.9 603,568 - MIT1002_00554 0.34 -2.3 603,568 - MIT1002_00554 0.34 -2.3 603,614 + MIT1002_00554 0.40 -0.3 603,682 + MIT1002_00554 0.48 +2.8 603,780 - MIT1002_00554 0.59 +0.8 603,804 + MIT1002_00554 0.62 +0.2 603,804 + MIT1002_00554 0.62 +0.0 603,814 + MIT1002_00554 0.63 -1.6 603,868 + MIT1002_00554 0.69 -1.6 603,899 + MIT1002_00554 0.73 +0.6 603,906 - MIT1002_00554 0.74 +1.4 603,907 - MIT1002_00554 0.74 -0.5 603,922 - MIT1002_00554 0.76 +1.6 603,955 - MIT1002_00554 0.80 +1.6 603,960 - MIT1002_00554 0.80 +1.2 603,984 + MIT1002_00554 0.83 -4.3 603,992 - MIT1002_00554 0.84 +0.8 603,997 - MIT1002_00554 0.84 +0.2 604,157 + -1.7 604,239 + MIT1002_00555 0.10 +0.4 604,258 + MIT1002_00555 0.16 -0.3 604,302 + MIT1002_00555 0.29 -0.3 604,415 - MIT1002_00555 0.63 -0.7 604,427 + MIT1002_00555 0.67 -0.2 604,435 - MIT1002_00555 0.69 -0.4 604,453 + MIT1002_00555 0.75 +0.1 604,625 + MIT1002_00556 0.14 +0.2 604,708 - MIT1002_00556 0.32 -0.1 604,765 + MIT1002_00556 0.45 -0.4 604,765 + MIT1002_00556 0.45 +0.5 604,766 - MIT1002_00556 0.45 -2.9 604,773 - MIT1002_00556 0.47 -2.5 604,773 - MIT1002_00556 0.47 -1.6 604,773 - MIT1002_00556 0.47 -0.7 604,814 + MIT1002_00556 0.56 +0.3 604,923 + MIT1002_00556 0.80 +0.1 605,018 + +1.0 605,018 + +1.1 605,025 + +1.7 605,036 + +0.1 605,036 + +0.8 605,039 - +0.1 605,072 - +1.8 605,082 - +0.4 605,082 - +0.2 605,082 - -0.5 605,088 - -1.9
Or see this region's nucleotide sequence