Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00511

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00509 and MIT1002_00510 are separated by 0 nucleotidesMIT1002_00510 and MIT1002_00511 are separated by 12 nucleotidesMIT1002_00511 and MIT1002_00512 overlap by 4 nucleotides MIT1002_00509: MIT1002_00509 - hypothetical protein, at 551,805 to 552,347 _00509 MIT1002_00510: MIT1002_00510 - Deoxyribonuclease TatD, at 552,348 to 553,124 _00510 MIT1002_00511: MIT1002_00511 - Bacteriophytochrome cph2, at 553,137 to 555,035 _00511 MIT1002_00512: MIT1002_00512 - Delta-aminolevulinic acid dehydratase, at 555,032 to 556,042 _00512 Position (kb) 553 554 555 556Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 552.185 kb on + strand, within MIT1002_00509at 552.242 kb on + strand, within MIT1002_00509at 552.250 kb on - strand, within MIT1002_00509at 552.250 kb on - strand, within MIT1002_00509at 552.250 kb on - strand, within MIT1002_00509at 552.250 kb on - strand, within MIT1002_00509at 552.257 kb on + strand, within MIT1002_00509at 552.265 kb on - strand, within MIT1002_00509at 552.273 kb on - strand, within MIT1002_00509at 552.301 kb on + strandat 552.309 kb on - strandat 552.309 kb on - strandat 552.309 kb on - strandat 552.318 kb on - strandat 552.323 kb on + strandat 552.356 kb on + strandat 552.363 kb on - strandat 552.423 kb on + strandat 552.469 kb on - strand, within MIT1002_00510at 552.510 kb on - strand, within MIT1002_00510at 552.515 kb on + strand, within MIT1002_00510at 552.515 kb on - strand, within MIT1002_00510at 552.521 kb on + strand, within MIT1002_00510at 552.537 kb on - strand, within MIT1002_00510at 552.561 kb on - strand, within MIT1002_00510at 552.685 kb on - strand, within MIT1002_00510at 552.685 kb on - strand, within MIT1002_00510at 552.705 kb on + strand, within MIT1002_00510at 552.705 kb on + strand, within MIT1002_00510at 552.705 kb on + strand, within MIT1002_00510at 552.705 kb on + strand, within MIT1002_00510at 552.705 kb on + strand, within MIT1002_00510at 552.706 kb on + strand, within MIT1002_00510at 552.714 kb on - strand, within MIT1002_00510at 552.774 kb on + strand, within MIT1002_00510at 552.814 kb on - strand, within MIT1002_00510at 552.841 kb on + strand, within MIT1002_00510at 552.841 kb on + strand, within MIT1002_00510at 552.841 kb on + strand, within MIT1002_00510at 552.841 kb on + strand, within MIT1002_00510at 552.841 kb on + strand, within MIT1002_00510at 552.849 kb on - strand, within MIT1002_00510at 552.849 kb on - strand, within MIT1002_00510at 552.849 kb on - strand, within MIT1002_00510at 552.849 kb on - strand, within MIT1002_00510at 552.881 kb on - strand, within MIT1002_00510at 552.886 kb on - strand, within MIT1002_00510at 552.898 kb on + strand, within MIT1002_00510at 552.903 kb on + strand, within MIT1002_00510at 552.923 kb on + strand, within MIT1002_00510at 552.930 kb on + strand, within MIT1002_00510at 552.931 kb on - strand, within MIT1002_00510at 552.931 kb on - strand, within MIT1002_00510at 552.931 kb on - strand, within MIT1002_00510at 552.938 kb on - strand, within MIT1002_00510at 552.938 kb on - strand, within MIT1002_00510at 552.971 kb on - strand, within MIT1002_00510at 552.982 kb on + strand, within MIT1002_00510at 553.209 kb on + strandat 553.239 kb on + strandat 553.247 kb on - strandat 553.247 kb on - strandat 553.247 kb on - strandat 553.247 kb on - strandat 553.249 kb on + strandat 553.474 kb on + strand, within MIT1002_00511at 553.482 kb on - strand, within MIT1002_00511at 553.530 kb on + strand, within MIT1002_00511at 553.563 kb on + strand, within MIT1002_00511at 553.643 kb on - strand, within MIT1002_00511at 553.643 kb on - strand, within MIT1002_00511at 553.645 kb on + strand, within MIT1002_00511at 553.645 kb on + strand, within MIT1002_00511at 553.653 kb on - strand, within MIT1002_00511at 553.653 kb on - strand, within MIT1002_00511at 553.710 kb on - strand, within MIT1002_00511at 553.804 kb on + strand, within MIT1002_00511at 553.850 kb on - strand, within MIT1002_00511at 553.864 kb on + strand, within MIT1002_00511at 553.864 kb on + strand, within MIT1002_00511at 553.903 kb on - strand, within MIT1002_00511at 553.926 kb on + strand, within MIT1002_00511at 553.934 kb on - strand, within MIT1002_00511at 553.957 kb on + strand, within MIT1002_00511at 553.957 kb on + strand, within MIT1002_00511at 553.965 kb on - strand, within MIT1002_00511at 553.981 kb on + strand, within MIT1002_00511at 553.989 kb on - strand, within MIT1002_00511at 554.044 kb on + strand, within MIT1002_00511at 554.057 kb on - strand, within MIT1002_00511at 554.098 kb on - strand, within MIT1002_00511at 554.138 kb on + strand, within MIT1002_00511at 554.206 kb on + strand, within MIT1002_00511at 554.235 kb on - strand, within MIT1002_00511at 554.245 kb on - strand, within MIT1002_00511at 554.280 kb on + strand, within MIT1002_00511at 554.349 kb on + strand, within MIT1002_00511at 554.355 kb on - strand, within MIT1002_00511at 554.362 kb on + strand, within MIT1002_00511at 554.420 kb on - strand, within MIT1002_00511at 554.441 kb on + strand, within MIT1002_00511at 554.461 kb on + strand, within MIT1002_00511at 554.469 kb on - strand, within MIT1002_00511at 554.518 kb on + strand, within MIT1002_00511at 554.518 kb on + strand, within MIT1002_00511at 554.526 kb on - strand, within MIT1002_00511at 554.537 kb on + strand, within MIT1002_00511at 554.554 kb on + strand, within MIT1002_00511at 554.597 kb on + strand, within MIT1002_00511at 554.597 kb on + strand, within MIT1002_00511at 554.597 kb on + strand, within MIT1002_00511at 554.599 kb on + strand, within MIT1002_00511at 554.605 kb on - strand, within MIT1002_00511at 554.616 kb on + strand, within MIT1002_00511at 554.669 kb on + strand, within MIT1002_00511at 554.676 kb on + strand, within MIT1002_00511at 554.772 kb on - strand, within MIT1002_00511at 554.797 kb on - strand, within MIT1002_00511at 554.797 kb on - strand, within MIT1002_00511at 554.842 kb on + strand, within MIT1002_00511at 554.850 kb on - strandat 554.852 kb on - strandat 554.871 kb on + strandat 554.996 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
remove
552,185 + MIT1002_00509 0.70 -1.4
552,242 + MIT1002_00509 0.80 -0.1
552,250 - MIT1002_00509 0.82 +0.6
552,250 - MIT1002_00509 0.82 -2.2
552,250 - MIT1002_00509 0.82 +0.2
552,250 - MIT1002_00509 0.82 -1.0
552,257 + MIT1002_00509 0.83 +1.2
552,265 - MIT1002_00509 0.85 +0.1
552,273 - MIT1002_00509 0.86 -0.3
552,301 + -0.4
552,309 - -0.4
552,309 - +0.4
552,309 - -0.3
552,318 - +0.6
552,323 + -2.7
552,356 + +3.7
552,363 - -0.1
552,423 + +0.5
552,469 - MIT1002_00510 0.16 +0.8
552,510 - MIT1002_00510 0.21 -0.3
552,515 + MIT1002_00510 0.21 +0.0
552,515 - MIT1002_00510 0.21 +0.2
552,521 + MIT1002_00510 0.22 +1.1
552,537 - MIT1002_00510 0.24 -1.0
552,561 - MIT1002_00510 0.27 +0.2
552,685 - MIT1002_00510 0.43 +0.8
552,685 - MIT1002_00510 0.43 +0.2
552,705 + MIT1002_00510 0.46 -0.6
552,705 + MIT1002_00510 0.46 -3.1
552,705 + MIT1002_00510 0.46 +1.0
552,705 + MIT1002_00510 0.46 -0.3
552,705 + MIT1002_00510 0.46 +0.8
552,706 + MIT1002_00510 0.46 +0.5
552,714 - MIT1002_00510 0.47 +0.2
552,774 + MIT1002_00510 0.55 -0.6
552,814 - MIT1002_00510 0.60 -0.3
552,841 + MIT1002_00510 0.63 -3.1
552,841 + MIT1002_00510 0.63 +0.6
552,841 + MIT1002_00510 0.63 +1.3
552,841 + MIT1002_00510 0.63 +1.5
552,841 + MIT1002_00510 0.63 +1.7
552,849 - MIT1002_00510 0.64 +0.7
552,849 - MIT1002_00510 0.64 -0.0
552,849 - MIT1002_00510 0.64 -0.8
552,849 - MIT1002_00510 0.64 +0.3
552,881 - MIT1002_00510 0.69 +0.3
552,886 - MIT1002_00510 0.69 +0.1
552,898 + MIT1002_00510 0.71 +0.3
552,903 + MIT1002_00510 0.71 -0.7
552,923 + MIT1002_00510 0.74 +1.3
552,930 + MIT1002_00510 0.75 +1.3
552,931 - MIT1002_00510 0.75 -2.3
552,931 - MIT1002_00510 0.75 -0.0
552,931 - MIT1002_00510 0.75 +1.4
552,938 - MIT1002_00510 0.76 +1.1
552,938 - MIT1002_00510 0.76 -0.2
552,971 - MIT1002_00510 0.80 +0.3
552,982 + MIT1002_00510 0.82 +0.3
553,209 + +0.2
553,239 + -0.0
553,247 - +1.0
553,247 - +0.5
553,247 - +0.1
553,247 - +1.0
553,249 + +0.8
553,474 + MIT1002_00511 0.18 -0.4
553,482 - MIT1002_00511 0.18 +0.3
553,530 + MIT1002_00511 0.21 +0.1
553,563 + MIT1002_00511 0.22 +1.9
553,643 - MIT1002_00511 0.27 +0.5
553,643 - MIT1002_00511 0.27 -0.9
553,645 + MIT1002_00511 0.27 +1.0
553,645 + MIT1002_00511 0.27 -1.8
553,653 - MIT1002_00511 0.27 -4.1
553,653 - MIT1002_00511 0.27 +0.8
553,710 - MIT1002_00511 0.30 +0.3
553,804 + MIT1002_00511 0.35 +0.0
553,850 - MIT1002_00511 0.38 -0.7
553,864 + MIT1002_00511 0.38 +1.7
553,864 + MIT1002_00511 0.38 -0.5
553,903 - MIT1002_00511 0.40 +0.3
553,926 + MIT1002_00511 0.42 -1.0
553,934 - MIT1002_00511 0.42 -0.1
553,957 + MIT1002_00511 0.43 +1.1
553,957 + MIT1002_00511 0.43 +0.2
553,965 - MIT1002_00511 0.44 +1.3
553,981 + MIT1002_00511 0.44 -0.3
553,989 - MIT1002_00511 0.45 -2.0
554,044 + MIT1002_00511 0.48 -0.7
554,057 - MIT1002_00511 0.48 -1.6
554,098 - MIT1002_00511 0.51 -2.0
554,138 + MIT1002_00511 0.53 +0.1
554,206 + MIT1002_00511 0.56 -3.1
554,235 - MIT1002_00511 0.58 +0.2
554,245 - MIT1002_00511 0.58 +1.0
554,280 + MIT1002_00511 0.60 -1.6
554,349 + MIT1002_00511 0.64 +1.3
554,355 - MIT1002_00511 0.64 -0.8
554,362 + MIT1002_00511 0.65 -1.6
554,420 - MIT1002_00511 0.68 -3.1
554,441 + MIT1002_00511 0.69 -0.2
554,461 + MIT1002_00511 0.70 -2.6
554,469 - MIT1002_00511 0.70 +1.3
554,518 + MIT1002_00511 0.73 -0.3
554,518 + MIT1002_00511 0.73 -0.3
554,526 - MIT1002_00511 0.73 -0.1
554,537 + MIT1002_00511 0.74 -0.6
554,554 + MIT1002_00511 0.75 -1.8
554,597 + MIT1002_00511 0.77 +0.8
554,597 + MIT1002_00511 0.77 -0.6
554,597 + MIT1002_00511 0.77 +0.6
554,599 + MIT1002_00511 0.77 -0.2
554,605 - MIT1002_00511 0.77 -1.8
554,616 + MIT1002_00511 0.78 -0.8
554,669 + MIT1002_00511 0.81 -1.3
554,676 + MIT1002_00511 0.81 -1.0
554,772 - MIT1002_00511 0.86 +0.8
554,797 - MIT1002_00511 0.87 -1.9
554,797 - MIT1002_00511 0.87 +0.1
554,842 + MIT1002_00511 0.90 +1.4
554,850 - -1.5
554,852 - -0.5
554,871 + -0.3
554,996 + +0.6

Or see this region's nucleotide sequence