Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00366

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00365 and MIT1002_00366 are separated by 26 nucleotidesMIT1002_00366 and MIT1002_00367 overlap by 8 nucleotidesMIT1002_00367 and MIT1002_00368 are separated by 44 nucleotides MIT1002_00365: MIT1002_00365 - Inosose dehydratase, at 393,568 to 394,635 _00365 MIT1002_00366: MIT1002_00366 - Putative nucleoside transporter YegT, at 394,662 to 395,879 _00366 MIT1002_00367: MIT1002_00367 - Hydroxypyruvate isomerase, at 395,872 to 396,801 _00367 MIT1002_00368: MIT1002_00368 - 6'''-hydroxyparomomycin C oxidase, at 396,846 to 398,531 _00368 Position (kb) 394 395 396Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 393.676 kb on - strand, within MIT1002_00365at 393.683 kb on + strand, within MIT1002_00365at 393.712 kb on - strand, within MIT1002_00365at 393.718 kb on - strand, within MIT1002_00365at 393.827 kb on - strand, within MIT1002_00365at 393.840 kb on + strand, within MIT1002_00365at 393.880 kb on - strand, within MIT1002_00365at 393.886 kb on + strand, within MIT1002_00365at 393.894 kb on - strand, within MIT1002_00365at 393.894 kb on - strand, within MIT1002_00365at 393.933 kb on + strand, within MIT1002_00365at 393.933 kb on + strand, within MIT1002_00365at 393.941 kb on - strand, within MIT1002_00365at 394.014 kb on + strand, within MIT1002_00365at 394.150 kb on + strand, within MIT1002_00365at 394.153 kb on - strand, within MIT1002_00365at 394.158 kb on - strand, within MIT1002_00365at 394.189 kb on + strand, within MIT1002_00365at 394.259 kb on + strand, within MIT1002_00365at 394.299 kb on + strand, within MIT1002_00365at 394.424 kb on - strand, within MIT1002_00365at 394.436 kb on + strand, within MIT1002_00365at 394.444 kb on - strand, within MIT1002_00365at 394.444 kb on - strand, within MIT1002_00365at 394.449 kb on - strand, within MIT1002_00365at 394.458 kb on + strand, within MIT1002_00365at 394.468 kb on + strand, within MIT1002_00365at 394.468 kb on + strand, within MIT1002_00365at 394.468 kb on + strand, within MIT1002_00365at 394.472 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.487 kb on + strand, within MIT1002_00365at 394.487 kb on + strand, within MIT1002_00365at 394.495 kb on - strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.516 kb on - strand, within MIT1002_00365at 394.559 kb on + strandat 394.590 kb on - strandat 394.590 kb on - strandat 394.596 kb on - strandat 394.668 kb on + strandat 394.669 kb on + strandat 394.669 kb on + strandat 394.669 kb on + strandat 394.698 kb on - strandat 394.784 kb on + strand, within MIT1002_00366at 394.785 kb on - strand, within MIT1002_00366at 394.794 kb on + strand, within MIT1002_00366at 394.802 kb on - strand, within MIT1002_00366at 394.802 kb on - strand, within MIT1002_00366at 394.802 kb on - strand, within MIT1002_00366at 394.830 kb on - strand, within MIT1002_00366at 394.891 kb on - strand, within MIT1002_00366at 394.910 kb on - strand, within MIT1002_00366at 394.915 kb on - strand, within MIT1002_00366at 394.920 kb on - strand, within MIT1002_00366at 394.920 kb on - strand, within MIT1002_00366at 394.939 kb on + strand, within MIT1002_00366at 394.994 kb on + strand, within MIT1002_00366at 394.999 kb on + strand, within MIT1002_00366at 395.002 kb on - strand, within MIT1002_00366at 395.002 kb on - strand, within MIT1002_00366at 395.007 kb on - strand, within MIT1002_00366at 395.007 kb on - strand, within MIT1002_00366at 395.029 kb on + strand, within MIT1002_00366at 395.037 kb on - strand, within MIT1002_00366at 395.037 kb on - strand, within MIT1002_00366at 395.094 kb on - strand, within MIT1002_00366at 395.126 kb on + strand, within MIT1002_00366at 395.165 kb on + strand, within MIT1002_00366at 395.170 kb on + strand, within MIT1002_00366at 395.178 kb on - strand, within MIT1002_00366at 395.178 kb on - strand, within MIT1002_00366at 395.200 kb on + strand, within MIT1002_00366at 395.200 kb on + strand, within MIT1002_00366at 395.210 kb on + strand, within MIT1002_00366at 395.275 kb on + strand, within MIT1002_00366at 395.328 kb on - strand, within MIT1002_00366at 395.495 kb on + strand, within MIT1002_00366at 395.503 kb on - strand, within MIT1002_00366at 395.503 kb on - strand, within MIT1002_00366at 395.503 kb on - strand, within MIT1002_00366at 395.559 kb on + strand, within MIT1002_00366at 395.604 kb on - strand, within MIT1002_00366at 395.638 kb on - strand, within MIT1002_00366at 395.649 kb on - strand, within MIT1002_00366at 395.649 kb on - strand, within MIT1002_00366at 395.660 kb on + strand, within MIT1002_00366at 395.707 kb on + strand, within MIT1002_00366at 395.730 kb on - strand, within MIT1002_00366at 395.750 kb on + strand, within MIT1002_00366at 395.789 kb on + strandat 395.789 kb on + strandat 395.789 kb on + strandat 395.797 kb on - strandat 395.808 kb on - strandat 395.854 kb on - strandat 395.887 kb on + strandat 395.907 kb on - strandat 395.941 kb on + strandat 395.941 kb on + strandat 395.944 kb on - strandat 395.949 kb on - strandat 395.968 kb on + strand, within MIT1002_00367at 396.036 kb on - strand, within MIT1002_00367at 396.071 kb on - strand, within MIT1002_00367at 396.117 kb on - strand, within MIT1002_00367at 396.117 kb on - strand, within MIT1002_00367at 396.157 kb on + strand, within MIT1002_00367at 396.217 kb on - strand, within MIT1002_00367at 396.263 kb on + strand, within MIT1002_00367at 396.263 kb on + strand, within MIT1002_00367at 396.271 kb on - strand, within MIT1002_00367at 396.271 kb on - strand, within MIT1002_00367at 396.271 kb on - strand, within MIT1002_00367at 396.336 kb on - strand, within MIT1002_00367at 396.373 kb on + strand, within MIT1002_00367at 396.375 kb on - strand, within MIT1002_00367at 396.382 kb on - strand, within MIT1002_00367at 396.465 kb on - strand, within MIT1002_00367at 396.466 kb on + strand, within MIT1002_00367at 396.485 kb on + strand, within MIT1002_00367at 396.509 kb on + strand, within MIT1002_00367at 396.509 kb on + strand, within MIT1002_00367at 396.509 kb on + strand, within MIT1002_00367at 396.517 kb on - strand, within MIT1002_00367at 396.517 kb on - strand, within MIT1002_00367at 396.527 kb on - strand, within MIT1002_00367at 396.641 kb on + strand, within MIT1002_00367at 396.709 kb on - strandat 396.718 kb on + strandat 396.718 kb on + strandat 396.726 kb on + strandat 396.726 kb on + strandat 396.726 kb on + strandat 396.726 kb on - strandat 396.753 kb on + strandat 396.766 kb on - strandat 396.795 kb on + strandat 396.838 kb on + strandat 396.841 kb on + strandat 396.843 kb on + strandat 396.849 kb on - strandat 396.849 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
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393,676 - MIT1002_00365 0.10 -0.9
393,683 + MIT1002_00365 0.11 +0.1
393,712 - MIT1002_00365 0.13 -0.0
393,718 - MIT1002_00365 0.14 +1.1
393,827 - MIT1002_00365 0.24 +0.0
393,840 + MIT1002_00365 0.25 -0.0
393,880 - MIT1002_00365 0.29 +1.6
393,886 + MIT1002_00365 0.30 -3.7
393,894 - MIT1002_00365 0.31 +0.2
393,894 - MIT1002_00365 0.31 -3.8
393,933 + MIT1002_00365 0.34 +0.4
393,933 + MIT1002_00365 0.34 -0.9
393,941 - MIT1002_00365 0.35 -0.9
394,014 + MIT1002_00365 0.42 -3.2
394,150 + MIT1002_00365 0.54 -1.6
394,153 - MIT1002_00365 0.55 -0.3
394,158 - MIT1002_00365 0.55 -0.6
394,189 + MIT1002_00365 0.58 -1.0
394,259 + MIT1002_00365 0.65 -1.0
394,299 + MIT1002_00365 0.68 -0.5
394,424 - MIT1002_00365 0.80 -0.5
394,436 + MIT1002_00365 0.81 +0.6
394,444 - MIT1002_00365 0.82 -0.4
394,444 - MIT1002_00365 0.82 +1.1
394,449 - MIT1002_00365 0.82 +0.0
394,458 + MIT1002_00365 0.83 +0.4
394,468 + MIT1002_00365 0.84 -0.4
394,468 + MIT1002_00365 0.84 +0.7
394,468 + MIT1002_00365 0.84 -2.2
394,472 - MIT1002_00365 0.85 +0.9
394,476 - MIT1002_00365 0.85 +0.7
394,476 - MIT1002_00365 0.85 +0.5
394,476 - MIT1002_00365 0.85 -0.7
394,476 - MIT1002_00365 0.85 -0.8
394,476 - MIT1002_00365 0.85 -0.5
394,476 - MIT1002_00365 0.85 -0.2
394,476 - MIT1002_00365 0.85 -0.5
394,487 + MIT1002_00365 0.86 -1.4
394,487 + MIT1002_00365 0.86 +0.5
394,495 - MIT1002_00365 0.87 -2.2
394,508 + MIT1002_00365 0.88 -1.5
394,508 + MIT1002_00365 0.88 +0.2
394,508 + MIT1002_00365 0.88 -0.4
394,508 + MIT1002_00365 0.88 -0.5
394,508 + MIT1002_00365 0.88 -3.8
394,508 + MIT1002_00365 0.88 +0.2
394,508 + MIT1002_00365 0.88 -1.2
394,508 + MIT1002_00365 0.88 -0.4
394,516 - MIT1002_00365 0.89 +0.4
394,559 + +0.3
394,590 - +0.2
394,590 - +1.7
394,596 - +0.8
394,668 + -1.4
394,669 + +2.0
394,669 + +0.6
394,669 + +0.3
394,698 - +0.4
394,784 + MIT1002_00366 0.10 +0.5
394,785 - MIT1002_00366 0.10 -2.5
394,794 + MIT1002_00366 0.11 +0.9
394,802 - MIT1002_00366 0.11 +0.8
394,802 - MIT1002_00366 0.11 +0.5
394,802 - MIT1002_00366 0.11 +0.4
394,830 - MIT1002_00366 0.14 +0.4
394,891 - MIT1002_00366 0.19 +0.9
394,910 - MIT1002_00366 0.20 +1.3
394,915 - MIT1002_00366 0.21 -1.2
394,920 - MIT1002_00366 0.21 -0.0
394,920 - MIT1002_00366 0.21 -0.5
394,939 + MIT1002_00366 0.23 -0.8
394,994 + MIT1002_00366 0.27 -0.2
394,999 + MIT1002_00366 0.28 +0.1
395,002 - MIT1002_00366 0.28 +1.0
395,002 - MIT1002_00366 0.28 +0.9
395,007 - MIT1002_00366 0.28 +1.9
395,007 - MIT1002_00366 0.28 -2.6
395,029 + MIT1002_00366 0.30 -1.9
395,037 - MIT1002_00366 0.31 -0.9
395,037 - MIT1002_00366 0.31 +0.9
395,094 - MIT1002_00366 0.35 +0.5
395,126 + MIT1002_00366 0.38 +1.2
395,165 + MIT1002_00366 0.41 -0.2
395,170 + MIT1002_00366 0.42 +2.5
395,178 - MIT1002_00366 0.42 -1.6
395,178 - MIT1002_00366 0.42 +0.4
395,200 + MIT1002_00366 0.44 +0.9
395,200 + MIT1002_00366 0.44 +0.7
395,210 + MIT1002_00366 0.45 -0.3
395,275 + MIT1002_00366 0.50 +1.4
395,328 - MIT1002_00366 0.55 +1.0
395,495 + MIT1002_00366 0.68 +2.2
395,503 - MIT1002_00366 0.69 +1.1
395,503 - MIT1002_00366 0.69 +0.5
395,503 - MIT1002_00366 0.69 +0.2
395,559 + MIT1002_00366 0.74 +0.0
395,604 - MIT1002_00366 0.77 -0.4
395,638 - MIT1002_00366 0.80 +2.4
395,649 - MIT1002_00366 0.81 -0.5
395,649 - MIT1002_00366 0.81 +1.9
395,660 + MIT1002_00366 0.82 -0.3
395,707 + MIT1002_00366 0.86 -0.3
395,730 - MIT1002_00366 0.88 +1.9
395,750 + MIT1002_00366 0.89 +1.0
395,789 + -0.5
395,789 + -0.9
395,789 + +0.1
395,797 - +1.4
395,808 - +0.6
395,854 - -0.6
395,887 + -0.7
395,907 - -0.7
395,941 + +0.1
395,941 + +0.5
395,944 - +1.3
395,949 - +0.2
395,968 + MIT1002_00367 0.10 -0.8
396,036 - MIT1002_00367 0.18 +0.1
396,071 - MIT1002_00367 0.21 +1.1
396,117 - MIT1002_00367 0.26 -0.4
396,117 - MIT1002_00367 0.26 -0.4
396,157 + MIT1002_00367 0.31 -2.0
396,217 - MIT1002_00367 0.37 -1.6
396,263 + MIT1002_00367 0.42 +0.3
396,263 + MIT1002_00367 0.42 +0.7
396,271 - MIT1002_00367 0.43 +0.1
396,271 - MIT1002_00367 0.43 +0.0
396,271 - MIT1002_00367 0.43 +0.6
396,336 - MIT1002_00367 0.50 -1.6
396,373 + MIT1002_00367 0.54 +0.9
396,375 - MIT1002_00367 0.54 +0.0
396,382 - MIT1002_00367 0.55 -2.2
396,465 - MIT1002_00367 0.64 -0.3
396,466 + MIT1002_00367 0.64 -1.4
396,485 + MIT1002_00367 0.66 -1.1
396,509 + MIT1002_00367 0.68 +1.0
396,509 + MIT1002_00367 0.68 +0.1
396,509 + MIT1002_00367 0.68 +0.2
396,517 - MIT1002_00367 0.69 +0.2
396,517 - MIT1002_00367 0.69 -0.5
396,527 - MIT1002_00367 0.70 -2.4
396,641 + MIT1002_00367 0.83 -0.5
396,709 - -1.2
396,718 + -1.6
396,718 + -0.2
396,726 + -1.1
396,726 + -0.2
396,726 + +0.4
396,726 - -1.9
396,753 + +0.3
396,766 - +0.1
396,795 + +0.3
396,838 + +0.7
396,841 + -0.2
396,843 + +0.7
396,849 - +0.1
396,849 - -0.1

Or see this region's nucleotide sequence