Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00348 and MIT1002_00349 are separated by 138 nucleotides MIT1002_00349 and MIT1002_00350 are separated by 126 nucleotides MIT1002_00350 and MIT1002_00351 overlap by 20 nucleotides
MIT1002_00348: MIT1002_00348 - hypothetical protein, at 372,803 to 374,131
_00348
MIT1002_00349: MIT1002_00349 - hypothetical protein, at 374,270 to 376,528
_00349
MIT1002_00350: MIT1002_00350 - hypothetical protein, at 376,655 to 376,855
_00350
MIT1002_00351: MIT1002_00351 - Degradation activator, at 376,836 to 377,870
_00351
Position (kb) 374
375
376
377 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 374.248 kb on + strand at 374.254 kb on - strand at 374.279 kb on + strand at 374.303 kb on + strand at 374.311 kb on + strand at 374.311 kb on + strand at 374.319 kb on - strand at 374.319 kb on - strand at 374.319 kb on - strand at 374.350 kb on + strand at 374.358 kb on - strand at 374.361 kb on + strand at 374.369 kb on - strand at 374.391 kb on + strand at 374.392 kb on - strand at 374.447 kb on - strand at 374.524 kb on - strand, within MIT1002_00349 at 374.560 kb on - strand, within MIT1002_00349 at 374.563 kb on + strand, within MIT1002_00349 at 374.701 kb on + strand, within MIT1002_00349 at 374.745 kb on + strand, within MIT1002_00349 at 374.751 kb on - strand, within MIT1002_00349 at 374.761 kb on - strand, within MIT1002_00349 at 374.799 kb on - strand, within MIT1002_00349 at 374.801 kb on + strand, within MIT1002_00349 at 374.801 kb on + strand, within MIT1002_00349 at 374.843 kb on - strand, within MIT1002_00349 at 374.867 kb on + strand, within MIT1002_00349 at 374.876 kb on + strand, within MIT1002_00349 at 374.882 kb on - strand, within MIT1002_00349 at 374.886 kb on + strand, within MIT1002_00349 at 374.886 kb on + strand, within MIT1002_00349 at 374.894 kb on - strand, within MIT1002_00349 at 374.894 kb on - strand, within MIT1002_00349 at 374.942 kb on + strand, within MIT1002_00349 at 375.038 kb on + strand, within MIT1002_00349 at 375.083 kb on + strand, within MIT1002_00349 at 375.088 kb on + strand, within MIT1002_00349 at 375.088 kb on + strand, within MIT1002_00349 at 375.088 kb on + strand, within MIT1002_00349 at 375.096 kb on - strand, within MIT1002_00349 at 375.096 kb on - strand, within MIT1002_00349 at 375.096 kb on - strand, within MIT1002_00349 at 375.106 kb on + strand, within MIT1002_00349 at 375.106 kb on + strand, within MIT1002_00349 at 375.106 kb on + strand, within MIT1002_00349 at 375.107 kb on - strand, within MIT1002_00349 at 375.114 kb on - strand, within MIT1002_00349 at 375.114 kb on - strand, within MIT1002_00349 at 375.114 kb on - strand, within MIT1002_00349 at 375.150 kb on - strand, within MIT1002_00349 at 375.199 kb on + strand, within MIT1002_00349 at 375.202 kb on - strand, within MIT1002_00349 at 375.207 kb on + strand, within MIT1002_00349 at 375.207 kb on + strand, within MIT1002_00349 at 375.214 kb on + strand, within MIT1002_00349 at 375.244 kb on + strand, within MIT1002_00349 at 375.284 kb on - strand, within MIT1002_00349 at 375.342 kb on - strand, within MIT1002_00349 at 375.350 kb on - strand, within MIT1002_00349 at 375.360 kb on - strand, within MIT1002_00349 at 375.388 kb on + strand, within MIT1002_00349 at 375.396 kb on - strand, within MIT1002_00349 at 375.396 kb on - strand, within MIT1002_00349 at 375.428 kb on + strand, within MIT1002_00349 at 375.446 kb on - strand, within MIT1002_00349 at 375.504 kb on - strand, within MIT1002_00349 at 375.517 kb on + strand, within MIT1002_00349 at 375.542 kb on + strand, within MIT1002_00349 at 375.555 kb on - strand, within MIT1002_00349 at 375.555 kb on - strand, within MIT1002_00349 at 375.603 kb on + strand, within MIT1002_00349 at 375.654 kb on + strand, within MIT1002_00349 at 375.691 kb on - strand, within MIT1002_00349 at 375.701 kb on + strand, within MIT1002_00349 at 375.729 kb on - strand, within MIT1002_00349 at 375.737 kb on + strand, within MIT1002_00349 at 375.744 kb on + strand, within MIT1002_00349 at 375.745 kb on - strand, within MIT1002_00349 at 375.755 kb on + strand, within MIT1002_00349 at 375.763 kb on - strand, within MIT1002_00349 at 375.763 kb on - strand, within MIT1002_00349 at 375.777 kb on + strand, within MIT1002_00349 at 375.793 kb on + strand, within MIT1002_00349 at 375.853 kb on - strand, within MIT1002_00349 at 375.888 kb on - strand, within MIT1002_00349 at 375.904 kb on + strand, within MIT1002_00349 at 375.959 kb on + strand, within MIT1002_00349 at 376.014 kb on - strand, within MIT1002_00349 at 376.063 kb on + strand, within MIT1002_00349 at 376.070 kb on + strand, within MIT1002_00349 at 376.071 kb on - strand, within MIT1002_00349 at 376.077 kb on - strand, within MIT1002_00349 at 376.078 kb on - strand, within MIT1002_00349 at 376.089 kb on + strand, within MIT1002_00349 at 376.140 kb on + strand, within MIT1002_00349 at 376.148 kb on - strand, within MIT1002_00349 at 376.161 kb on + strand, within MIT1002_00349 at 376.169 kb on - strand, within MIT1002_00349 at 376.183 kb on - strand, within MIT1002_00349 at 376.196 kb on + strand, within MIT1002_00349 at 376.208 kb on + strand, within MIT1002_00349 at 376.287 kb on + strand, within MIT1002_00349 at 376.287 kb on + strand, within MIT1002_00349 at 376.386 kb on + strand at 376.396 kb on + strand at 376.471 kb on + strand at 376.471 kb on + strand at 376.471 kb on + strand at 376.479 kb on - strand at 376.479 kb on - strand at 376.485 kb on - strand at 376.486 kb on + strand at 376.566 kb on - strand at 376.602 kb on - strand at 376.722 kb on + strand, within MIT1002_00350 at 376.772 kb on + strand, within MIT1002_00350 at 376.780 kb on - strand, within MIT1002_00350 at 376.860 kb on + strand at 376.870 kb on + strand at 376.911 kb on - strand at 376.963 kb on + strand, within MIT1002_00351 at 376.983 kb on + strand, within MIT1002_00351 at 377.061 kb on - strand, within MIT1002_00351 at 377.066 kb on + strand, within MIT1002_00351 at 377.076 kb on + strand, within MIT1002_00351 at 377.086 kb on + strand, within MIT1002_00351 at 377.091 kb on - strand, within MIT1002_00351 at 377.094 kb on - strand, within MIT1002_00351 at 377.119 kb on + strand, within MIT1002_00351 at 377.152 kb on + strand, within MIT1002_00351 at 377.218 kb on - strand, within MIT1002_00351 at 377.233 kb on - strand, within MIT1002_00351 at 377.246 kb on + strand, within MIT1002_00351 at 377.254 kb on - strand, within MIT1002_00351 at 377.306 kb on - strand, within MIT1002_00351 at 377.365 kb on + strand, within MIT1002_00351 at 377.425 kb on + strand, within MIT1002_00351 at 377.460 kb on + strand, within MIT1002_00351 at 377.468 kb on - strand, within MIT1002_00351 at 377.468 kb on - strand, within MIT1002_00351 at 377.468 kb on - strand, within MIT1002_00351 at 377.468 kb on - strand, within MIT1002_00351 at 377.483 kb on - strand, within MIT1002_00351 at 377.518 kb on + strand, within MIT1002_00351 at 377.526 kb on - strand, within MIT1002_00351
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3 remove 374,248 + +1.0 374,254 - +0.4 374,279 + -2.2 374,303 + +0.3 374,311 + -1.0 374,311 + +1.2 374,319 - +0.5 374,319 - +0.2 374,319 - -2.2 374,350 + -0.2 374,358 - -0.5 374,361 + -0.4 374,369 - -0.2 374,391 + +0.5 374,392 - -2.2 374,447 - -2.7 374,524 - MIT1002_00349 0.11 +0.5 374,560 - MIT1002_00349 0.13 +1.3 374,563 + MIT1002_00349 0.13 -1.0 374,701 + MIT1002_00349 0.19 +2.0 374,745 + MIT1002_00349 0.21 -0.3 374,751 - MIT1002_00349 0.21 +0.7 374,761 - MIT1002_00349 0.22 -1.3 374,799 - MIT1002_00349 0.23 +0.5 374,801 + MIT1002_00349 0.24 +1.0 374,801 + MIT1002_00349 0.24 +0.9 374,843 - MIT1002_00349 0.25 -2.7 374,867 + MIT1002_00349 0.26 -3.2 374,876 + MIT1002_00349 0.27 +0.5 374,882 - MIT1002_00349 0.27 -1.5 374,886 + MIT1002_00349 0.27 -0.2 374,886 + MIT1002_00349 0.27 +0.2 374,894 - MIT1002_00349 0.28 -0.6 374,894 - MIT1002_00349 0.28 -0.1 374,942 + MIT1002_00349 0.30 -1.2 375,038 + MIT1002_00349 0.34 -1.2 375,083 + MIT1002_00349 0.36 -0.3 375,088 + MIT1002_00349 0.36 +1.7 375,088 + MIT1002_00349 0.36 +0.3 375,088 + MIT1002_00349 0.36 -0.3 375,096 - MIT1002_00349 0.37 +1.7 375,096 - MIT1002_00349 0.37 -2.9 375,096 - MIT1002_00349 0.37 -0.6 375,106 + MIT1002_00349 0.37 -0.4 375,106 + MIT1002_00349 0.37 +0.1 375,106 + MIT1002_00349 0.37 +1.0 375,107 - MIT1002_00349 0.37 -0.2 375,114 - MIT1002_00349 0.37 -0.0 375,114 - MIT1002_00349 0.37 +1.2 375,114 - MIT1002_00349 0.37 -0.1 375,150 - MIT1002_00349 0.39 -0.4 375,199 + MIT1002_00349 0.41 +0.4 375,202 - MIT1002_00349 0.41 -1.7 375,207 + MIT1002_00349 0.41 +0.2 375,207 + MIT1002_00349 0.41 +1.3 375,214 + MIT1002_00349 0.42 +1.2 375,244 + MIT1002_00349 0.43 +0.5 375,284 - MIT1002_00349 0.45 +0.6 375,342 - MIT1002_00349 0.47 +0.1 375,350 - MIT1002_00349 0.48 -1.9 375,360 - MIT1002_00349 0.48 +2.8 375,388 + MIT1002_00349 0.49 +1.9 375,396 - MIT1002_00349 0.50 +0.0 375,396 - MIT1002_00349 0.50 +0.1 375,428 + MIT1002_00349 0.51 +0.0 375,446 - MIT1002_00349 0.52 +0.6 375,504 - MIT1002_00349 0.55 +0.6 375,517 + MIT1002_00349 0.55 -0.3 375,542 + MIT1002_00349 0.56 -1.6 375,555 - MIT1002_00349 0.57 -1.8 375,555 - MIT1002_00349 0.57 -2.1 375,603 + MIT1002_00349 0.59 +1.4 375,654 + MIT1002_00349 0.61 +0.7 375,691 - MIT1002_00349 0.63 +0.2 375,701 + MIT1002_00349 0.63 +0.0 375,729 - MIT1002_00349 0.65 +0.9 375,737 + MIT1002_00349 0.65 +1.7 375,744 + MIT1002_00349 0.65 +0.7 375,745 - MIT1002_00349 0.65 +0.0 375,755 + MIT1002_00349 0.66 +0.9 375,763 - MIT1002_00349 0.66 +0.1 375,763 - MIT1002_00349 0.66 -2.2 375,777 + MIT1002_00349 0.67 +0.5 375,793 + MIT1002_00349 0.67 +0.2 375,853 - MIT1002_00349 0.70 +0.0 375,888 - MIT1002_00349 0.72 -2.0 375,904 + MIT1002_00349 0.72 +0.0 375,959 + MIT1002_00349 0.75 +0.5 376,014 - MIT1002_00349 0.77 +2.2 376,063 + MIT1002_00349 0.79 +0.7 376,070 + MIT1002_00349 0.80 -0.8 376,071 - MIT1002_00349 0.80 -0.2 376,077 - MIT1002_00349 0.80 -0.1 376,078 - MIT1002_00349 0.80 +1.5 376,089 + MIT1002_00349 0.81 +1.2 376,140 + MIT1002_00349 0.83 -2.4 376,148 - MIT1002_00349 0.83 +0.5 376,161 + MIT1002_00349 0.84 +0.1 376,169 - MIT1002_00349 0.84 -1.5 376,183 - MIT1002_00349 0.85 -1.7 376,196 + MIT1002_00349 0.85 +0.2 376,208 + MIT1002_00349 0.86 -1.3 376,287 + MIT1002_00349 0.89 +2.0 376,287 + MIT1002_00349 0.89 -0.3 376,386 + -1.6 376,396 + +2.3 376,471 + -1.7 376,471 + -3.6 376,471 + -2.1 376,479 - +2.1 376,479 - -2.2 376,485 - -0.5 376,486 + +0.5 376,566 - +0.6 376,602 - +1.0 376,722 + MIT1002_00350 0.33 +0.0 376,772 + MIT1002_00350 0.58 -0.8 376,780 - MIT1002_00350 0.62 -1.0 376,860 + -3.6 376,870 + -5.0 376,911 - -2.6 376,963 + MIT1002_00351 0.12 -2.1 376,983 + MIT1002_00351 0.14 -2.4 377,061 - MIT1002_00351 0.22 -4.2 377,066 + MIT1002_00351 0.22 -1.6 377,076 + MIT1002_00351 0.23 -1.1 377,086 + MIT1002_00351 0.24 -2.3 377,091 - MIT1002_00351 0.25 -5.3 377,094 - MIT1002_00351 0.25 -1.1 377,119 + MIT1002_00351 0.27 -4.5 377,152 + MIT1002_00351 0.31 -2.1 377,218 - MIT1002_00351 0.37 -1.2 377,233 - MIT1002_00351 0.38 -4.5 377,246 + MIT1002_00351 0.40 -2.5 377,254 - MIT1002_00351 0.40 -2.3 377,306 - MIT1002_00351 0.45 -2.6 377,365 + MIT1002_00351 0.51 -1.1 377,425 + MIT1002_00351 0.57 -2.7 377,460 + MIT1002_00351 0.60 -3.4 377,468 - MIT1002_00351 0.61 -5.1 377,468 - MIT1002_00351 0.61 -1.6 377,468 - MIT1002_00351 0.61 -2.4 377,468 - MIT1002_00351 0.61 -1.9 377,483 - MIT1002_00351 0.63 -3.5 377,518 + MIT1002_00351 0.66 -0.8 377,526 - MIT1002_00351 0.67 -3.5
Or see this region's nucleotide sequence