Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00344 and MIT1002_00345 are separated by 462 nucleotides MIT1002_00345 and MIT1002_00346 are separated by 917 nucleotides
MIT1002_00344: MIT1002_00344 - tyrosine recombinase XerC, at 368,304 to 369,593
_00344
MIT1002_00345: MIT1002_00345 - hypothetical protein, at 370,056 to 370,565
_00345
MIT1002_00346: MIT1002_00346 - hypothetical protein, at 371,483 to 371,743
_00346
Position (kb) 370
371 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 369.152 kb on + strand, within MIT1002_00344 at 369.290 kb on + strand, within MIT1002_00344 at 369.290 kb on + strand, within MIT1002_00344 at 369.329 kb on + strand, within MIT1002_00344 at 369.335 kb on + strand, within MIT1002_00344 at 369.354 kb on + strand, within MIT1002_00344 at 369.525 kb on - strand at 369.525 kb on - strand at 369.529 kb on + strand at 369.529 kb on + strand at 369.529 kb on + strand at 369.529 kb on + strand at 369.529 kb on + strand at 369.537 kb on - strand at 369.537 kb on - strand at 369.860 kb on - strand at 369.874 kb on - strand at 369.917 kb on + strand at 370.003 kb on - strand at 370.003 kb on - strand at 370.005 kb on + strand at 370.015 kb on - strand at 370.237 kb on + strand, within MIT1002_00345 at 370.237 kb on + strand, within MIT1002_00345 at 370.245 kb on - strand, within MIT1002_00345 at 370.245 kb on - strand, within MIT1002_00345 at 370.249 kb on + strand, within MIT1002_00345 at 370.254 kb on + strand, within MIT1002_00345 at 370.302 kb on - strand, within MIT1002_00345 at 370.302 kb on - strand, within MIT1002_00345 at 370.302 kb on - strand, within MIT1002_00345 at 370.399 kb on - strand, within MIT1002_00345 at 370.452 kb on - strand, within MIT1002_00345 at 370.462 kb on - strand, within MIT1002_00345 at 370.462 kb on - strand, within MIT1002_00345 at 370.462 kb on - strand, within MIT1002_00345 at 370.462 kb on - strand, within MIT1002_00345 at 370.462 kb on - strand, within MIT1002_00345 at 370.475 kb on + strand, within MIT1002_00345 at 370.481 kb on + strand, within MIT1002_00345 at 370.541 kb on - strand at 370.686 kb on + strand at 370.796 kb on - strand at 370.865 kb on - strand at 370.891 kb on - strand at 370.908 kb on - strand at 370.923 kb on + strand at 370.931 kb on - strand at 370.991 kb on - strand at 371.019 kb on + strand at 371.142 kb on - strand at 371.158 kb on + strand at 371.166 kb on - strand at 371.166 kb on - strand at 371.168 kb on + strand at 371.189 kb on + strand at 371.439 kb on + strand at 371.447 kb on - strand at 371.447 kb on - strand at 371.447 kb on - strand at 371.447 kb on - strand at 371.470 kb on + strand at 371.513 kb on + strand, within MIT1002_00346 at 371.513 kb on + strand, within MIT1002_00346 at 371.517 kb on - strand, within MIT1002_00346 at 371.521 kb on - strand, within MIT1002_00346
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3 remove 369,152 + MIT1002_00344 0.66 -2.4 369,290 + MIT1002_00344 0.76 +0.5 369,290 + MIT1002_00344 0.76 -1.3 369,329 + MIT1002_00344 0.79 +0.0 369,335 + MIT1002_00344 0.80 -0.5 369,354 + MIT1002_00344 0.81 +0.0 369,525 - -0.0 369,525 - +0.1 369,529 + +1.4 369,529 + +0.0 369,529 + -4.3 369,529 + -3.0 369,529 + +0.3 369,537 - +0.0 369,537 - -0.5 369,860 - -2.1 369,874 - +2.5 369,917 + -1.6 370,003 - +0.5 370,003 - +0.7 370,005 + +0.7 370,015 - +2.4 370,237 + MIT1002_00345 0.35 +1.5 370,237 + MIT1002_00345 0.35 -0.1 370,245 - MIT1002_00345 0.37 -0.6 370,245 - MIT1002_00345 0.37 -3.9 370,249 + MIT1002_00345 0.38 -0.8 370,254 + MIT1002_00345 0.39 +1.6 370,302 - MIT1002_00345 0.48 -0.7 370,302 - MIT1002_00345 0.48 -1.1 370,302 - MIT1002_00345 0.48 +0.4 370,399 - MIT1002_00345 0.67 +0.2 370,452 - MIT1002_00345 0.78 +0.2 370,462 - MIT1002_00345 0.80 +0.5 370,462 - MIT1002_00345 0.80 -0.8 370,462 - MIT1002_00345 0.80 -1.0 370,462 - MIT1002_00345 0.80 +1.4 370,462 - MIT1002_00345 0.80 -1.9 370,475 + MIT1002_00345 0.82 +1.5 370,481 + MIT1002_00345 0.83 +1.3 370,541 - -2.2 370,686 + -0.8 370,796 - -0.0 370,865 - +0.1 370,891 - -1.6 370,908 - +0.8 370,923 + +0.1 370,931 - +0.1 370,991 - -1.9 371,019 + +0.5 371,142 - +1.3 371,158 + -1.6 371,166 - -0.5 371,166 - +1.8 371,168 + +0.6 371,189 + -1.0 371,439 + +0.6 371,447 - +0.3 371,447 - +0.1 371,447 - -0.4 371,447 - -2.2 371,470 + -0.2 371,513 + MIT1002_00346 0.11 +0.5 371,513 + MIT1002_00346 0.11 +2.5 371,517 - MIT1002_00346 0.13 +1.3 371,521 - MIT1002_00346 0.15 -1.3
Or see this region's nucleotide sequence