Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00342

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00340 and MIT1002_00341 are separated by 234 nucleotidesMIT1002_00341 and MIT1002_00342 overlap by 8 nucleotidesMIT1002_00342 and MIT1002_00343 are separated by 121 nucleotides MIT1002_00340: MIT1002_00340 - hypothetical protein, at 365,324 to 365,674 _00340 MIT1002_00341: MIT1002_00341 - glutaredoxin 3, at 365,909 to 366,640 _00341 MIT1002_00342: MIT1002_00342 - hypothetical protein, at 366,633 to 367,163 _00342 MIT1002_00343: MIT1002_00343 - Ion channel, at 367,285 to 367,680 _00343 Position (kb) 366 367 368Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 365.708 kb on + strandat 365.744 kb on + strandat 365.768 kb on + strandat 365.771 kb on - strandat 365.972 kb on + strandat 365.988 kb on - strand, within MIT1002_00341at 365.993 kb on - strand, within MIT1002_00341at 366.016 kb on + strand, within MIT1002_00341at 366.017 kb on - strand, within MIT1002_00341at 366.077 kb on - strand, within MIT1002_00341at 366.122 kb on + strand, within MIT1002_00341at 366.125 kb on - strand, within MIT1002_00341at 366.137 kb on + strand, within MIT1002_00341at 366.150 kb on + strand, within MIT1002_00341at 366.163 kb on - strand, within MIT1002_00341at 366.229 kb on - strand, within MIT1002_00341at 366.267 kb on + strand, within MIT1002_00341at 366.327 kb on + strand, within MIT1002_00341at 366.381 kb on + strand, within MIT1002_00341at 366.435 kb on - strand, within MIT1002_00341at 366.439 kb on - strand, within MIT1002_00341at 366.461 kb on + strand, within MIT1002_00341at 366.469 kb on - strand, within MIT1002_00341at 366.533 kb on + strand, within MIT1002_00341at 366.576 kb on - strandat 366.588 kb on + strandat 366.696 kb on - strand, within MIT1002_00342at 366.698 kb on + strand, within MIT1002_00342at 366.706 kb on - strand, within MIT1002_00342at 366.706 kb on - strand, within MIT1002_00342at 366.714 kb on - strand, within MIT1002_00342at 366.714 kb on - strand, within MIT1002_00342at 366.737 kb on + strand, within MIT1002_00342at 366.814 kb on + strand, within MIT1002_00342at 366.814 kb on + strand, within MIT1002_00342at 366.829 kb on - strand, within MIT1002_00342at 366.845 kb on - strand, within MIT1002_00342at 366.855 kb on + strand, within MIT1002_00342at 366.927 kb on - strand, within MIT1002_00342at 367.030 kb on - strand, within MIT1002_00342at 367.040 kb on + strand, within MIT1002_00342at 367.147 kb on + strandat 367.246 kb on + strandat 367.254 kb on - strandat 367.318 kb on + strandat 367.318 kb on + strandat 367.326 kb on - strand, within MIT1002_00343at 367.326 kb on - strand, within MIT1002_00343at 367.328 kb on + strand, within MIT1002_00343at 367.328 kb on + strand, within MIT1002_00343at 367.328 kb on - strand, within MIT1002_00343at 367.333 kb on + strand, within MIT1002_00343at 367.336 kb on - strand, within MIT1002_00343at 367.336 kb on - strand, within MIT1002_00343at 367.336 kb on - strand, within MIT1002_00343at 367.381 kb on + strand, within MIT1002_00343at 367.383 kb on + strand, within MIT1002_00343at 367.383 kb on + strand, within MIT1002_00343at 367.389 kb on - strand, within MIT1002_00343at 367.391 kb on - strand, within MIT1002_00343at 367.400 kb on - strand, within MIT1002_00343at 367.577 kb on + strand, within MIT1002_00343at 367.654 kb on - strandat 367.703 kb on + strandat 367.703 kb on + strandat 367.703 kb on + strandat 367.703 kb on - strandat 367.704 kb on + strandat 367.711 kb on - strandat 367.711 kb on - strandat 367.711 kb on - strandat 367.712 kb on - strandat 367.712 kb on - strandat 367.712 kb on - strandat 367.712 kb on - strandat 367.712 kb on - strandat 367.786 kb on + strandat 367.796 kb on + strandat 367.796 kb on + strandat 367.796 kb on + strandat 367.808 kb on + strandat 367.825 kb on + strandat 367.835 kb on - strandat 367.863 kb on + strandat 367.863 kb on + strandat 367.863 kb on + strandat 367.871 kb on - strandat 367.954 kb on + strandat 367.963 kb on - strandat 368.060 kb on - strandat 368.067 kb on + strandat 368.075 kb on - strandat 368.075 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
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365,708 + -0.6
365,744 + -1.4
365,768 + +1.6
365,771 - +1.0
365,972 + -1.1
365,988 - MIT1002_00341 0.11 -2.5
365,993 - MIT1002_00341 0.11 -0.8
366,016 + MIT1002_00341 0.15 -1.2
366,017 - MIT1002_00341 0.15 -0.6
366,077 - MIT1002_00341 0.23 +1.1
366,122 + MIT1002_00341 0.29 +0.1
366,125 - MIT1002_00341 0.30 -0.3
366,137 + MIT1002_00341 0.31 -0.4
366,150 + MIT1002_00341 0.33 +0.5
366,163 - MIT1002_00341 0.35 +0.3
366,229 - MIT1002_00341 0.44 +2.0
366,267 + MIT1002_00341 0.49 -1.2
366,327 + MIT1002_00341 0.57 +1.3
366,381 + MIT1002_00341 0.64 -0.4
366,435 - MIT1002_00341 0.72 -1.6
366,439 - MIT1002_00341 0.72 +0.2
366,461 + MIT1002_00341 0.75 +0.1
366,469 - MIT1002_00341 0.77 -0.0
366,533 + MIT1002_00341 0.85 +0.3
366,576 - -1.1
366,588 + -0.3
366,696 - MIT1002_00342 0.12 +3.3
366,698 + MIT1002_00342 0.12 +0.3
366,706 - MIT1002_00342 0.14 -1.6
366,706 - MIT1002_00342 0.14 -0.7
366,714 - MIT1002_00342 0.15 -0.3
366,714 - MIT1002_00342 0.15 +0.8
366,737 + MIT1002_00342 0.20 -2.7
366,814 + MIT1002_00342 0.34 -0.5
366,814 + MIT1002_00342 0.34 +0.4
366,829 - MIT1002_00342 0.37 +0.5
366,845 - MIT1002_00342 0.40 -0.1
366,855 + MIT1002_00342 0.42 +0.2
366,927 - MIT1002_00342 0.55 +0.9
367,030 - MIT1002_00342 0.75 +0.5
367,040 + MIT1002_00342 0.77 -1.4
367,147 + -1.2
367,246 + +0.1
367,254 - +0.4
367,318 + +0.4
367,318 + -0.4
367,326 - MIT1002_00343 0.10 -0.9
367,326 - MIT1002_00343 0.10 -1.0
367,328 + MIT1002_00343 0.11 +0.1
367,328 + MIT1002_00343 0.11 +1.4
367,328 - MIT1002_00343 0.11 +0.2
367,333 + MIT1002_00343 0.12 -1.7
367,336 - MIT1002_00343 0.13 -0.9
367,336 - MIT1002_00343 0.13 -0.9
367,336 - MIT1002_00343 0.13 -1.3
367,381 + MIT1002_00343 0.24 -0.2
367,383 + MIT1002_00343 0.25 +0.2
367,383 + MIT1002_00343 0.25 -1.2
367,389 - MIT1002_00343 0.26 -0.4
367,391 - MIT1002_00343 0.27 -3.2
367,400 - MIT1002_00343 0.29 -1.2
367,577 + MIT1002_00343 0.74 -0.2
367,654 - -0.2
367,703 + +0.2
367,703 + +0.0
367,703 + -0.2
367,703 - -0.4
367,704 + -3.2
367,711 - +1.4
367,711 - +0.0
367,711 - +0.8
367,712 - -0.2
367,712 - +3.3
367,712 - +0.5
367,712 - +0.2
367,712 - +1.1
367,786 + +1.4
367,796 + +0.2
367,796 + -0.2
367,796 + -1.4
367,808 + -0.8
367,825 + +0.4
367,835 - +0.2
367,863 + -0.4
367,863 + -0.2
367,863 + +2.2
367,871 - -2.6
367,954 + +0.6
367,963 - +0.4
368,060 - -1.3
368,067 + +0.6
368,075 - -0.7
368,075 - -0.6

Or see this region's nucleotide sequence