Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00304

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00303 and MIT1002_00304 overlap by 26 nucleotidesMIT1002_00304 and MIT1002_00305 are separated by 0 nucleotides MIT1002_00303: MIT1002_00303 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 328,052 to 329,794 _00303 MIT1002_00304: MIT1002_00304 - SNARE associated Golgi protein, at 329,769 to 330,485 _00304 MIT1002_00305: MIT1002_00305 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 330,486 to 331,220 _00305 Position (kb) 329 330 331Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 328.772 kb on + strand, within MIT1002_00303at 328.772 kb on + strand, within MIT1002_00303at 328.772 kb on + strand, within MIT1002_00303at 328.772 kb on + strand, within MIT1002_00303at 328.772 kb on + strand, within MIT1002_00303at 328.772 kb on + strand, within MIT1002_00303at 328.772 kb on + strand, within MIT1002_00303at 328.775 kb on - strand, within MIT1002_00303at 328.780 kb on - strand, within MIT1002_00303at 328.780 kb on - strand, within MIT1002_00303at 328.780 kb on - strand, within MIT1002_00303at 328.780 kb on - strand, within MIT1002_00303at 328.780 kb on - strand, within MIT1002_00303at 328.830 kb on - strand, within MIT1002_00303at 328.838 kb on + strand, within MIT1002_00303at 328.838 kb on + strand, within MIT1002_00303at 328.852 kb on - strand, within MIT1002_00303at 328.962 kb on + strand, within MIT1002_00303at 328.966 kb on - strand, within MIT1002_00303at 329.007 kb on - strand, within MIT1002_00303at 329.035 kb on - strand, within MIT1002_00303at 329.084 kb on - strand, within MIT1002_00303at 329.084 kb on - strand, within MIT1002_00303at 329.105 kb on + strand, within MIT1002_00303at 329.105 kb on + strand, within MIT1002_00303at 329.110 kb on + strand, within MIT1002_00303at 329.113 kb on - strand, within MIT1002_00303at 329.113 kb on - strand, within MIT1002_00303at 329.118 kb on - strand, within MIT1002_00303at 329.175 kb on + strand, within MIT1002_00303at 329.183 kb on - strand, within MIT1002_00303at 329.183 kb on - strand, within MIT1002_00303at 329.210 kb on + strand, within MIT1002_00303at 329.274 kb on + strand, within MIT1002_00303at 329.282 kb on - strand, within MIT1002_00303at 329.283 kb on - strand, within MIT1002_00303at 329.322 kb on + strand, within MIT1002_00303at 329.327 kb on - strand, within MIT1002_00303at 329.330 kb on + strand, within MIT1002_00303at 329.371 kb on - strand, within MIT1002_00303at 329.373 kb on + strand, within MIT1002_00303at 329.373 kb on + strand, within MIT1002_00303at 329.373 kb on + strand, within MIT1002_00303at 329.373 kb on + strand, within MIT1002_00303at 329.381 kb on - strand, within MIT1002_00303at 329.381 kb on - strand, within MIT1002_00303at 329.500 kb on - strand, within MIT1002_00303at 329.500 kb on - strand, within MIT1002_00303at 329.515 kb on - strand, within MIT1002_00303at 329.534 kb on + strand, within MIT1002_00303at 329.572 kb on - strand, within MIT1002_00303at 329.572 kb on - strand, within MIT1002_00303at 329.586 kb on + strand, within MIT1002_00303at 329.586 kb on + strand, within MIT1002_00303at 329.618 kb on + strand, within MIT1002_00303at 329.618 kb on + strand, within MIT1002_00303at 329.626 kb on - strandat 329.636 kb on - strandat 329.783 kb on + strandat 329.791 kb on - strandat 329.941 kb on + strand, within MIT1002_00304at 329.947 kb on + strand, within MIT1002_00304at 330.013 kb on - strand, within MIT1002_00304at 330.130 kb on + strand, within MIT1002_00304at 330.200 kb on - strand, within MIT1002_00304at 330.205 kb on + strand, within MIT1002_00304at 330.210 kb on + strand, within MIT1002_00304at 330.218 kb on - strand, within MIT1002_00304at 330.218 kb on - strand, within MIT1002_00304at 330.218 kb on - strand, within MIT1002_00304at 330.218 kb on - strand, within MIT1002_00304at 330.218 kb on - strand, within MIT1002_00304at 330.218 kb on - strand, within MIT1002_00304at 330.245 kb on - strand, within MIT1002_00304at 330.269 kb on - strand, within MIT1002_00304at 330.270 kb on - strand, within MIT1002_00304at 330.397 kb on - strand, within MIT1002_00304at 330.577 kb on - strand, within MIT1002_00305at 330.577 kb on - strand, within MIT1002_00305at 330.625 kb on + strand, within MIT1002_00305at 330.677 kb on - strand, within MIT1002_00305at 330.740 kb on + strand, within MIT1002_00305at 330.749 kb on - strand, within MIT1002_00305at 330.829 kb on + strand, within MIT1002_00305at 330.837 kb on - strand, within MIT1002_00305at 330.875 kb on - strand, within MIT1002_00305at 330.912 kb on + strand, within MIT1002_00305at 330.973 kb on + strand, within MIT1002_00305at 330.977 kb on + strand, within MIT1002_00305at 330.978 kb on + strand, within MIT1002_00305at 330.978 kb on + strand, within MIT1002_00305at 330.983 kb on + strand, within MIT1002_00305at 330.986 kb on - strand, within MIT1002_00305at 330.986 kb on - strand, within MIT1002_00305at 330.986 kb on - strand, within MIT1002_00305at 330.986 kb on - strand, within MIT1002_00305at 331.005 kb on - strand, within MIT1002_00305at 331.005 kb on - strand, within MIT1002_00305at 331.019 kb on + strand, within MIT1002_00305at 331.138 kb on + strand, within MIT1002_00305at 331.359 kb on - strandat 331.379 kb on + strandat 331.379 kb on + strandat 331.387 kb on - strandat 331.389 kb on - strandat 331.389 kb on - strandat 331.401 kb on - strandat 331.422 kb on - strandat 331.426 kb on + strandat 331.439 kb on - strandat 331.483 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
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328,772 + MIT1002_00303 0.41 +0.8
328,772 + MIT1002_00303 0.41 +0.3
328,772 + MIT1002_00303 0.41 +0.1
328,772 + MIT1002_00303 0.41 -3.0
328,772 + MIT1002_00303 0.41 +1.6
328,772 + MIT1002_00303 0.41 -0.8
328,772 + MIT1002_00303 0.41 -1.2
328,775 - MIT1002_00303 0.41 -1.0
328,780 - MIT1002_00303 0.42 +1.2
328,780 - MIT1002_00303 0.42 +1.0
328,780 - MIT1002_00303 0.42 -0.6
328,780 - MIT1002_00303 0.42 +0.5
328,780 - MIT1002_00303 0.42 -0.7
328,830 - MIT1002_00303 0.45 -2.7
328,838 + MIT1002_00303 0.45 -3.8
328,838 + MIT1002_00303 0.45 +0.5
328,852 - MIT1002_00303 0.46 +0.6
328,962 + MIT1002_00303 0.52 -0.2
328,966 - MIT1002_00303 0.52 -1.6
329,007 - MIT1002_00303 0.55 -0.4
329,035 - MIT1002_00303 0.56 +1.7
329,084 - MIT1002_00303 0.59 -0.4
329,084 - MIT1002_00303 0.59 +0.8
329,105 + MIT1002_00303 0.60 -0.3
329,105 + MIT1002_00303 0.60 +0.0
329,110 + MIT1002_00303 0.61 +0.3
329,113 - MIT1002_00303 0.61 +1.2
329,113 - MIT1002_00303 0.61 +0.0
329,118 - MIT1002_00303 0.61 +0.8
329,175 + MIT1002_00303 0.64 -0.5
329,183 - MIT1002_00303 0.65 +2.9
329,183 - MIT1002_00303 0.65 -0.2
329,210 + MIT1002_00303 0.66 +2.4
329,274 + MIT1002_00303 0.70 +0.8
329,282 - MIT1002_00303 0.71 -2.0
329,283 - MIT1002_00303 0.71 -1.0
329,322 + MIT1002_00303 0.73 -0.2
329,327 - MIT1002_00303 0.73 -2.6
329,330 + MIT1002_00303 0.73 +1.2
329,371 - MIT1002_00303 0.76 -1.5
329,373 + MIT1002_00303 0.76 -0.3
329,373 + MIT1002_00303 0.76 -1.7
329,373 + MIT1002_00303 0.76 -0.6
329,373 + MIT1002_00303 0.76 -0.0
329,381 - MIT1002_00303 0.76 +1.4
329,381 - MIT1002_00303 0.76 +0.6
329,500 - MIT1002_00303 0.83 +0.0
329,500 - MIT1002_00303 0.83 +0.8
329,515 - MIT1002_00303 0.84 -1.6
329,534 + MIT1002_00303 0.85 +0.3
329,572 - MIT1002_00303 0.87 -0.5
329,572 - MIT1002_00303 0.87 -1.2
329,586 + MIT1002_00303 0.88 -1.0
329,586 + MIT1002_00303 0.88 -0.3
329,618 + MIT1002_00303 0.90 -1.5
329,618 + MIT1002_00303 0.90 +1.5
329,626 - +0.9
329,636 - +3.2
329,783 + +0.1
329,791 - -0.5
329,941 + MIT1002_00304 0.24 +2.6
329,947 + MIT1002_00304 0.25 +1.5
330,013 - MIT1002_00304 0.34 +0.4
330,130 + MIT1002_00304 0.50 -1.1
330,200 - MIT1002_00304 0.60 -0.6
330,205 + MIT1002_00304 0.61 +0.6
330,210 + MIT1002_00304 0.62 +0.5
330,218 - MIT1002_00304 0.63 -0.3
330,218 - MIT1002_00304 0.63 -1.1
330,218 - MIT1002_00304 0.63 +0.9
330,218 - MIT1002_00304 0.63 -1.9
330,218 - MIT1002_00304 0.63 -1.1
330,218 - MIT1002_00304 0.63 -0.1
330,245 - MIT1002_00304 0.66 +1.5
330,269 - MIT1002_00304 0.70 +0.4
330,270 - MIT1002_00304 0.70 +1.9
330,397 - MIT1002_00304 0.88 +0.4
330,577 - MIT1002_00305 0.12 +0.9
330,577 - MIT1002_00305 0.12 -0.6
330,625 + MIT1002_00305 0.19 -1.2
330,677 - MIT1002_00305 0.26 -1.6
330,740 + MIT1002_00305 0.35 -2.8
330,749 - MIT1002_00305 0.36 -0.0
330,829 + MIT1002_00305 0.47 -1.7
330,837 - MIT1002_00305 0.48 -2.7
330,875 - MIT1002_00305 0.53 +0.6
330,912 + MIT1002_00305 0.58 +0.5
330,973 + MIT1002_00305 0.66 -2.2
330,977 + MIT1002_00305 0.67 +1.3
330,978 + MIT1002_00305 0.67 +0.9
330,978 + MIT1002_00305 0.67 +0.4
330,983 + MIT1002_00305 0.68 +0.9
330,986 - MIT1002_00305 0.68 -0.0
330,986 - MIT1002_00305 0.68 +0.3
330,986 - MIT1002_00305 0.68 -2.3
330,986 - MIT1002_00305 0.68 +0.5
331,005 - MIT1002_00305 0.71 -0.0
331,005 - MIT1002_00305 0.71 +1.2
331,019 + MIT1002_00305 0.73 -0.7
331,138 + MIT1002_00305 0.89 -2.3
331,359 - -2.6
331,379 + +0.7
331,379 + -0.4
331,387 - +0.0
331,389 - -0.1
331,389 - -2.9
331,401 - -0.4
331,422 - +1.1
331,426 + +3.4
331,439 - -2.7
331,483 - +1.0

Or see this region's nucleotide sequence