Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00182

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00180 and MIT1002_00181 are separated by 65 nucleotidesMIT1002_00181 and MIT1002_00182 are separated by 74 nucleotidesMIT1002_00182 and MIT1002_00183 are separated by 253 nucleotides MIT1002_00180: MIT1002_00180 - Inner membrane transport protein YajR, at 196,500 to 197,837 _00180 MIT1002_00181: MIT1002_00181 - Fructose-1-phosphate phosphatase YqaB, at 197,903 to 198,487 _00181 MIT1002_00182: MIT1002_00182 - hypothetical protein, at 198,562 to 199,155 _00182 MIT1002_00183: MIT1002_00183 - Alpha/beta hydrolase family protein, at 199,409 to 200,272 _00183 Position (kb) 198 199 200Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 197.654 kb on - strand, within MIT1002_00180at 197.657 kb on + strand, within MIT1002_00180at 197.657 kb on + strand, within MIT1002_00180at 197.664 kb on - strand, within MIT1002_00180at 197.664 kb on - strand, within MIT1002_00180at 197.665 kb on - strand, within MIT1002_00180at 197.665 kb on - strand, within MIT1002_00180at 197.692 kb on + strand, within MIT1002_00180at 197.692 kb on + strand, within MIT1002_00180at 197.716 kb on - strandat 197.744 kb on - strandat 197.759 kb on - strandat 197.830 kb on + strandat 197.835 kb on - strandat 197.857 kb on + strandat 197.901 kb on + strandat 197.952 kb on - strandat 197.976 kb on + strand, within MIT1002_00181at 198.042 kb on + strand, within MIT1002_00181at 198.077 kb on - strand, within MIT1002_00181at 198.149 kb on + strand, within MIT1002_00181at 198.158 kb on - strand, within MIT1002_00181at 198.168 kb on + strand, within MIT1002_00181at 198.208 kb on - strand, within MIT1002_00181at 198.236 kb on + strand, within MIT1002_00181at 198.304 kb on + strand, within MIT1002_00181at 198.304 kb on + strand, within MIT1002_00181at 198.304 kb on + strand, within MIT1002_00181at 198.304 kb on + strand, within MIT1002_00181at 198.304 kb on + strand, within MIT1002_00181at 198.304 kb on + strand, within MIT1002_00181at 198.312 kb on - strand, within MIT1002_00181at 198.312 kb on - strand, within MIT1002_00181at 198.312 kb on - strand, within MIT1002_00181at 198.312 kb on - strand, within MIT1002_00181at 198.312 kb on - strand, within MIT1002_00181at 198.312 kb on - strand, within MIT1002_00181at 198.328 kb on + strand, within MIT1002_00181at 198.328 kb on + strand, within MIT1002_00181at 198.328 kb on + strand, within MIT1002_00181at 198.336 kb on - strand, within MIT1002_00181at 198.336 kb on - strand, within MIT1002_00181at 198.336 kb on - strand, within MIT1002_00181at 198.340 kb on + strand, within MIT1002_00181at 198.356 kb on - strand, within MIT1002_00181at 198.373 kb on - strand, within MIT1002_00181at 198.375 kb on + strand, within MIT1002_00181at 198.383 kb on - strand, within MIT1002_00181at 198.396 kb on - strand, within MIT1002_00181at 198.407 kb on - strand, within MIT1002_00181at 198.451 kb on - strandat 198.488 kb on + strandat 198.496 kb on - strandat 198.496 kb on - strandat 198.498 kb on + strandat 198.526 kb on - strandat 198.567 kb on - strandat 198.567 kb on - strandat 198.568 kb on - strandat 198.583 kb on - strandat 198.681 kb on + strand, within MIT1002_00182at 198.705 kb on + strand, within MIT1002_00182at 198.728 kb on + strand, within MIT1002_00182at 198.730 kb on + strand, within MIT1002_00182at 198.745 kb on - strand, within MIT1002_00182at 198.745 kb on - strand, within MIT1002_00182at 198.761 kb on + strand, within MIT1002_00182at 198.769 kb on - strand, within MIT1002_00182at 198.769 kb on - strand, within MIT1002_00182at 198.781 kb on - strand, within MIT1002_00182at 198.781 kb on - strand, within MIT1002_00182at 198.829 kb on + strand, within MIT1002_00182at 198.837 kb on - strand, within MIT1002_00182at 198.837 kb on - strand, within MIT1002_00182at 198.839 kb on + strand, within MIT1002_00182at 198.885 kb on + strand, within MIT1002_00182at 198.885 kb on + strand, within MIT1002_00182at 198.885 kb on + strand, within MIT1002_00182at 198.885 kb on + strand, within MIT1002_00182at 198.893 kb on - strand, within MIT1002_00182at 198.893 kb on - strand, within MIT1002_00182at 198.893 kb on - strand, within MIT1002_00182at 198.893 kb on - strand, within MIT1002_00182at 198.893 kb on - strand, within MIT1002_00182at 198.898 kb on + strand, within MIT1002_00182at 198.913 kb on - strand, within MIT1002_00182at 198.960 kb on - strand, within MIT1002_00182at 198.960 kb on - strand, within MIT1002_00182at 198.971 kb on - strand, within MIT1002_00182at 198.981 kb on - strand, within MIT1002_00182at 199.007 kb on + strand, within MIT1002_00182at 199.016 kb on - strand, within MIT1002_00182at 199.077 kb on + strand, within MIT1002_00182at 199.084 kb on - strand, within MIT1002_00182at 199.097 kb on + strandat 199.102 kb on + strandat 199.110 kb on - strandat 199.115 kb on - strandat 199.163 kb on + strandat 199.282 kb on - strandat 199.297 kb on + strandat 199.297 kb on + strandat 199.297 kb on + strandat 199.305 kb on - strandat 199.353 kb on - strandat 199.353 kb on - strandat 199.354 kb on - strandat 199.365 kb on + strandat 199.449 kb on - strandat 199.470 kb on + strandat 199.478 kb on - strandat 199.492 kb on - strandat 199.530 kb on + strand, within MIT1002_00183at 199.574 kb on + strand, within MIT1002_00183at 199.574 kb on + strand, within MIT1002_00183at 199.582 kb on - strand, within MIT1002_00183at 199.641 kb on - strand, within MIT1002_00183at 199.646 kb on - strand, within MIT1002_00183at 199.649 kb on + strand, within MIT1002_00183at 199.652 kb on - strand, within MIT1002_00183at 199.714 kb on - strand, within MIT1002_00183at 199.763 kb on + strand, within MIT1002_00183at 199.771 kb on - strand, within MIT1002_00183at 199.818 kb on + strand, within MIT1002_00183at 199.826 kb on - strand, within MIT1002_00183at 199.943 kb on + strand, within MIT1002_00183at 199.951 kb on - strand, within MIT1002_00183at 199.991 kb on + strand, within MIT1002_00183at 200.001 kb on + strand, within MIT1002_00183at 200.038 kb on + strand, within MIT1002_00183at 200.039 kb on + strand, within MIT1002_00183at 200.057 kb on + strand, within MIT1002_00183at 200.081 kb on - strand, within MIT1002_00183at 200.099 kb on - strand, within MIT1002_00183at 200.103 kb on - strand, within MIT1002_00183at 200.110 kb on + strand, within MIT1002_00183at 200.154 kb on - strand, within MIT1002_00183

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
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197,654 - MIT1002_00180 0.86 -3.7
197,657 + MIT1002_00180 0.86 -1.4
197,657 + MIT1002_00180 0.86 -0.3
197,664 - MIT1002_00180 0.87 -1.2
197,664 - MIT1002_00180 0.87 +0.1
197,665 - MIT1002_00180 0.87 -2.1
197,665 - MIT1002_00180 0.87 -1.3
197,692 + MIT1002_00180 0.89 -0.7
197,692 + MIT1002_00180 0.89 +1.2
197,716 - +1.1
197,744 - -3.1
197,759 - +0.2
197,830 + -1.3
197,835 - -1.7
197,857 + +1.6
197,901 + +0.9
197,952 - -0.4
197,976 + MIT1002_00181 0.12 -1.2
198,042 + MIT1002_00181 0.24 -0.8
198,077 - MIT1002_00181 0.30 -0.1
198,149 + MIT1002_00181 0.42 +1.7
198,158 - MIT1002_00181 0.44 -0.6
198,168 + MIT1002_00181 0.45 -0.5
198,208 - MIT1002_00181 0.52 -2.8
198,236 + MIT1002_00181 0.57 +1.6
198,304 + MIT1002_00181 0.69 -1.7
198,304 + MIT1002_00181 0.69 -2.3
198,304 + MIT1002_00181 0.69 -1.7
198,304 + MIT1002_00181 0.69 -3.1
198,304 + MIT1002_00181 0.69 +0.9
198,304 + MIT1002_00181 0.69 +1.2
198,312 - MIT1002_00181 0.70 -0.4
198,312 - MIT1002_00181 0.70 +1.1
198,312 - MIT1002_00181 0.70 -1.7
198,312 - MIT1002_00181 0.70 +0.2
198,312 - MIT1002_00181 0.70 +0.3
198,312 - MIT1002_00181 0.70 -0.4
198,328 + MIT1002_00181 0.73 +0.1
198,328 + MIT1002_00181 0.73 -0.0
198,328 + MIT1002_00181 0.73 +1.0
198,336 - MIT1002_00181 0.74 -0.7
198,336 - MIT1002_00181 0.74 -0.9
198,336 - MIT1002_00181 0.74 -0.1
198,340 + MIT1002_00181 0.75 -0.8
198,356 - MIT1002_00181 0.77 -1.0
198,373 - MIT1002_00181 0.80 -1.4
198,375 + MIT1002_00181 0.81 -2.8
198,383 - MIT1002_00181 0.82 -0.3
198,396 - MIT1002_00181 0.84 +2.2
198,407 - MIT1002_00181 0.86 -3.1
198,451 - -1.2
198,488 + +0.1
198,496 - -0.1
198,496 - +0.9
198,498 + -1.7
198,526 - -0.3
198,567 - -0.2
198,567 - +0.3
198,568 - +0.3
198,583 - +1.3
198,681 + MIT1002_00182 0.20 +0.5
198,705 + MIT1002_00182 0.24 +0.0
198,728 + MIT1002_00182 0.28 -0.4
198,730 + MIT1002_00182 0.28 +0.2
198,745 - MIT1002_00182 0.31 +0.0
198,745 - MIT1002_00182 0.31 +0.4
198,761 + MIT1002_00182 0.34 +0.4
198,769 - MIT1002_00182 0.35 +1.3
198,769 - MIT1002_00182 0.35 -0.2
198,781 - MIT1002_00182 0.37 +2.2
198,781 - MIT1002_00182 0.37 -0.5
198,829 + MIT1002_00182 0.45 -0.8
198,837 - MIT1002_00182 0.46 +0.0
198,837 - MIT1002_00182 0.46 -3.1
198,839 + MIT1002_00182 0.47 +1.1
198,885 + MIT1002_00182 0.54 -1.0
198,885 + MIT1002_00182 0.54 +2.4
198,885 + MIT1002_00182 0.54 +0.3
198,885 + MIT1002_00182 0.54 +0.0
198,893 - MIT1002_00182 0.56 +0.9
198,893 - MIT1002_00182 0.56 +3.3
198,893 - MIT1002_00182 0.56 +0.9
198,893 - MIT1002_00182 0.56 +0.7
198,893 - MIT1002_00182 0.56 -1.5
198,898 + MIT1002_00182 0.57 +0.4
198,913 - MIT1002_00182 0.59 +0.4
198,960 - MIT1002_00182 0.67 +0.6
198,960 - MIT1002_00182 0.67 +0.7
198,971 - MIT1002_00182 0.69 +0.1
198,981 - MIT1002_00182 0.71 +0.6
199,007 + MIT1002_00182 0.75 -1.2
199,016 - MIT1002_00182 0.76 -0.8
199,077 + MIT1002_00182 0.87 -2.1
199,084 - MIT1002_00182 0.88 -0.7
199,097 + +1.1
199,102 + -0.6
199,110 - -1.9
199,115 - +0.2
199,163 + +0.4
199,282 - +0.6
199,297 + +2.7
199,297 + -1.6
199,297 + -1.1
199,305 - +0.7
199,353 - +2.3
199,353 - +0.3
199,354 - -0.2
199,365 + -2.9
199,449 - -0.3
199,470 + -0.5
199,478 - -2.7
199,492 - +0.4
199,530 + MIT1002_00183 0.14 +0.2
199,574 + MIT1002_00183 0.19 -0.1
199,574 + MIT1002_00183 0.19 +0.7
199,582 - MIT1002_00183 0.20 -0.2
199,641 - MIT1002_00183 0.27 +2.2
199,646 - MIT1002_00183 0.27 +1.4
199,649 + MIT1002_00183 0.28 -0.7
199,652 - MIT1002_00183 0.28 -0.2
199,714 - MIT1002_00183 0.35 +0.4
199,763 + MIT1002_00183 0.41 -0.0
199,771 - MIT1002_00183 0.42 -0.2
199,818 + MIT1002_00183 0.47 +0.3
199,826 - MIT1002_00183 0.48 +0.7
199,943 + MIT1002_00183 0.62 -0.4
199,951 - MIT1002_00183 0.63 +0.2
199,991 + MIT1002_00183 0.67 -0.2
200,001 + MIT1002_00183 0.69 +0.6
200,038 + MIT1002_00183 0.73 -2.2
200,039 + MIT1002_00183 0.73 +0.6
200,057 + MIT1002_00183 0.75 +0.8
200,081 - MIT1002_00183 0.78 +1.1
200,099 - MIT1002_00183 0.80 -0.7
200,103 - MIT1002_00183 0.80 +0.4
200,110 + MIT1002_00183 0.81 +0.6
200,154 - MIT1002_00183 0.86 -1.3

Or see this region's nucleotide sequence