Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00166

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00165 and MIT1002_00166 are separated by 31 nucleotidesMIT1002_00166 and MIT1002_00167 are separated by 2 nucleotidesMIT1002_00167 and MIT1002_00168 are separated by 71 nucleotides MIT1002_00165: MIT1002_00165 - Multiple sugar-binding protein precursor, at 180,537 to 181,778 _00165 MIT1002_00166: MIT1002_00166 - S1/P1 Nuclease, at 181,810 to 182,619 _00166 MIT1002_00167: MIT1002_00167 - putative aromatic acid decarboxylase, at 182,622 to 183,254 _00167 MIT1002_00168: MIT1002_00168 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 183,326 to 184,684 _00168 Position (kb) 181 182 183Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 180.835 kb on + strand, within MIT1002_00165at 180.835 kb on + strand, within MIT1002_00165at 180.835 kb on + strand, within MIT1002_00165at 180.835 kb on + strand, within MIT1002_00165at 180.843 kb on - strand, within MIT1002_00165at 180.845 kb on - strand, within MIT1002_00165at 180.845 kb on - strand, within MIT1002_00165at 180.907 kb on + strand, within MIT1002_00165at 180.915 kb on - strand, within MIT1002_00165at 180.927 kb on - strand, within MIT1002_00165at 181.006 kb on - strand, within MIT1002_00165at 181.016 kb on + strand, within MIT1002_00165at 181.051 kb on + strand, within MIT1002_00165at 181.059 kb on - strand, within MIT1002_00165at 181.073 kb on + strand, within MIT1002_00165at 181.074 kb on + strand, within MIT1002_00165at 181.074 kb on - strand, within MIT1002_00165at 181.082 kb on - strand, within MIT1002_00165at 181.086 kb on + strand, within MIT1002_00165at 181.132 kb on + strand, within MIT1002_00165at 181.139 kb on + strand, within MIT1002_00165at 181.140 kb on - strand, within MIT1002_00165at 181.147 kb on - strand, within MIT1002_00165at 181.167 kb on + strand, within MIT1002_00165at 181.169 kb on + strand, within MIT1002_00165at 181.169 kb on + strand, within MIT1002_00165at 181.194 kb on - strand, within MIT1002_00165at 181.270 kb on + strand, within MIT1002_00165at 181.279 kb on + strand, within MIT1002_00165at 181.287 kb on - strand, within MIT1002_00165at 181.287 kb on - strand, within MIT1002_00165at 181.301 kb on + strand, within MIT1002_00165at 181.309 kb on - strand, within MIT1002_00165at 181.348 kb on + strand, within MIT1002_00165at 181.395 kb on + strand, within MIT1002_00165at 181.395 kb on + strand, within MIT1002_00165at 181.400 kb on + strand, within MIT1002_00165at 181.400 kb on + strand, within MIT1002_00165at 181.400 kb on + strand, within MIT1002_00165at 181.408 kb on - strand, within MIT1002_00165at 181.457 kb on + strand, within MIT1002_00165at 181.457 kb on + strand, within MIT1002_00165at 181.465 kb on - strand, within MIT1002_00165at 181.514 kb on - strand, within MIT1002_00165at 181.611 kb on - strand, within MIT1002_00165at 181.716 kb on + strandat 181.716 kb on + strandat 181.716 kb on + strandat 181.716 kb on + strandat 181.724 kb on - strandat 181.724 kb on - strandat 181.753 kb on + strandat 181.753 kb on + strandat 181.753 kb on + strandat 181.753 kb on + strandat 181.761 kb on - strandat 181.761 kb on - strandat 181.761 kb on - strandat 181.761 kb on - strandat 181.771 kb on - strandat 181.823 kb on - strandat 181.983 kb on + strand, within MIT1002_00166at 181.991 kb on - strand, within MIT1002_00166at 181.991 kb on - strand, within MIT1002_00166at 181.991 kb on - strand, within MIT1002_00166at 181.991 kb on - strand, within MIT1002_00166at 181.994 kb on + strand, within MIT1002_00166at 182.013 kb on - strand, within MIT1002_00166at 182.057 kb on + strand, within MIT1002_00166at 182.065 kb on - strand, within MIT1002_00166at 182.065 kb on - strand, within MIT1002_00166at 182.065 kb on - strand, within MIT1002_00166at 182.067 kb on + strand, within MIT1002_00166at 182.076 kb on + strand, within MIT1002_00166at 182.076 kb on + strand, within MIT1002_00166at 182.076 kb on + strand, within MIT1002_00166at 182.076 kb on + strand, within MIT1002_00166at 182.108 kb on + strand, within MIT1002_00166at 182.118 kb on - strand, within MIT1002_00166at 182.303 kb on + strand, within MIT1002_00166at 182.351 kb on + strand, within MIT1002_00166at 182.359 kb on + strand, within MIT1002_00166at 182.359 kb on + strand, within MIT1002_00166at 182.405 kb on - strand, within MIT1002_00166at 182.415 kb on - strand, within MIT1002_00166at 182.469 kb on - strand, within MIT1002_00166at 182.563 kb on - strandat 182.578 kb on + strandat 182.628 kb on - strandat 183.306 kb on - strandat 183.460 kb on + strandat 183.460 kb on - strandat 183.472 kb on + strand, within MIT1002_00168at 183.478 kb on - strand, within MIT1002_00168at 183.478 kb on - strand, within MIT1002_00168at 183.515 kb on + strand, within MIT1002_00168at 183.515 kb on + strand, within MIT1002_00168at 183.515 kb on + strand, within MIT1002_00168at 183.515 kb on + strand, within MIT1002_00168at 183.523 kb on - strand, within MIT1002_00168at 183.523 kb on - strand, within MIT1002_00168at 183.523 kb on - strand, within MIT1002_00168at 183.545 kb on - strand, within MIT1002_00168

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
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180,835 + MIT1002_00165 0.24 -0.1
180,835 + MIT1002_00165 0.24 -2.1
180,835 + MIT1002_00165 0.24 +0.2
180,835 + MIT1002_00165 0.24 +0.7
180,843 - MIT1002_00165 0.25 -0.9
180,845 - MIT1002_00165 0.25 +0.7
180,845 - MIT1002_00165 0.25 +0.4
180,907 + MIT1002_00165 0.30 +0.0
180,915 - MIT1002_00165 0.30 -1.1
180,927 - MIT1002_00165 0.31 +0.3
181,006 - MIT1002_00165 0.38 -0.2
181,016 + MIT1002_00165 0.39 -0.6
181,051 + MIT1002_00165 0.41 +0.6
181,059 - MIT1002_00165 0.42 -1.3
181,073 + MIT1002_00165 0.43 +0.2
181,074 + MIT1002_00165 0.43 -1.4
181,074 - MIT1002_00165 0.43 -2.8
181,082 - MIT1002_00165 0.44 -2.0
181,086 + MIT1002_00165 0.44 +1.4
181,132 + MIT1002_00165 0.48 -3.1
181,139 + MIT1002_00165 0.48 -1.2
181,140 - MIT1002_00165 0.49 -1.8
181,147 - MIT1002_00165 0.49 +1.0
181,167 + MIT1002_00165 0.51 -0.0
181,169 + MIT1002_00165 0.51 +1.2
181,169 + MIT1002_00165 0.51 -2.0
181,194 - MIT1002_00165 0.53 +0.9
181,270 + MIT1002_00165 0.59 +1.3
181,279 + MIT1002_00165 0.60 -1.7
181,287 - MIT1002_00165 0.60 -1.0
181,287 - MIT1002_00165 0.60 +0.7
181,301 + MIT1002_00165 0.62 -0.1
181,309 - MIT1002_00165 0.62 -0.3
181,348 + MIT1002_00165 0.65 -2.1
181,395 + MIT1002_00165 0.69 +0.3
181,395 + MIT1002_00165 0.69 -0.5
181,400 + MIT1002_00165 0.69 +0.4
181,400 + MIT1002_00165 0.69 -1.8
181,400 + MIT1002_00165 0.69 -0.3
181,408 - MIT1002_00165 0.70 -0.9
181,457 + MIT1002_00165 0.74 +0.3
181,457 + MIT1002_00165 0.74 -1.2
181,465 - MIT1002_00165 0.75 -1.2
181,514 - MIT1002_00165 0.79 +0.2
181,611 - MIT1002_00165 0.86 -0.5
181,716 + +0.8
181,716 + -1.4
181,716 + +1.8
181,716 + +1.1
181,724 - +1.4
181,724 - +0.8
181,753 + -1.2
181,753 + +0.0
181,753 + -0.0
181,753 + +1.8
181,761 - +0.1
181,761 - -1.2
181,761 - +0.6
181,761 - +0.6
181,771 - -0.3
181,823 - -0.7
181,983 + MIT1002_00166 0.21 -0.7
181,991 - MIT1002_00166 0.22 -0.7
181,991 - MIT1002_00166 0.22 +0.4
181,991 - MIT1002_00166 0.22 +0.2
181,991 - MIT1002_00166 0.22 +0.1
181,994 + MIT1002_00166 0.23 -0.4
182,013 - MIT1002_00166 0.25 +0.3
182,057 + MIT1002_00166 0.30 +2.0
182,065 - MIT1002_00166 0.31 +0.9
182,065 - MIT1002_00166 0.31 +0.3
182,065 - MIT1002_00166 0.31 +1.0
182,067 + MIT1002_00166 0.32 -0.1
182,076 + MIT1002_00166 0.33 -2.3
182,076 + MIT1002_00166 0.33 -0.6
182,076 + MIT1002_00166 0.33 -0.3
182,076 + MIT1002_00166 0.33 -1.1
182,108 + MIT1002_00166 0.37 +0.5
182,118 - MIT1002_00166 0.38 -1.7
182,303 + MIT1002_00166 0.61 +0.2
182,351 + MIT1002_00166 0.67 +0.0
182,359 + MIT1002_00166 0.68 +0.0
182,359 + MIT1002_00166 0.68 -1.8
182,405 - MIT1002_00166 0.73 -0.4
182,415 - MIT1002_00166 0.75 +0.6
182,469 - MIT1002_00166 0.81 +0.4
182,563 - +0.2
182,578 + -1.5
182,628 - +0.5
183,306 - +0.7
183,460 + +1.9
183,460 - -0.0
183,472 + MIT1002_00168 0.11 +0.7
183,478 - MIT1002_00168 0.11 +0.7
183,478 - MIT1002_00168 0.11 +2.8
183,515 + MIT1002_00168 0.14 +0.0
183,515 + MIT1002_00168 0.14 -1.0
183,515 + MIT1002_00168 0.14 -1.4
183,515 + MIT1002_00168 0.14 +1.2
183,523 - MIT1002_00168 0.14 +0.5
183,523 - MIT1002_00168 0.14 -0.3
183,523 - MIT1002_00168 0.14 -0.3
183,545 - MIT1002_00168 0.16 -0.1

Or see this region's nucleotide sequence