Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00129

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
138,388	-		MIT1002_00128	0.40	-0.1
138,532	+		MIT1002_00128	0.49	-0.4
138,545	-		MIT1002_00128	0.50	-3.8
138,594	+		MIT1002_00128	0.53	-0.7
138,663	+		MIT1002_00128	0.57	+1.6
138,738	+		MIT1002_00128	0.62	-2.0
138,746	-		MIT1002_00128	0.62	-0.5
138,756	+		MIT1002_00128	0.63	-0.3
138,819	+		MIT1002_00128	0.67	-1.0
138,819	+		MIT1002_00128	0.67	+1.2
138,827	-		MIT1002_00128	0.68	-4.7
138,827	-		MIT1002_00128	0.68	+0.0
138,828	-		MIT1002_00128	0.68	+1.0
138,863	+		MIT1002_00128	0.70	-0.4
138,888	+		MIT1002_00128	0.72	+0.8
138,893	+		MIT1002_00128	0.72	-1.2
138,896	-		MIT1002_00128	0.72	-0.2
138,963	+		MIT1002_00128	0.76	+0.0
138,971	-		MIT1002_00128	0.77	-0.5
138,994	+		MIT1002_00128	0.78	-0.6
139,002	-		MIT1002_00128	0.79	+0.2
139,052	+		MIT1002_00128	0.82	+2.0
139,070	-		MIT1002_00128	0.83	-1.5
139,080	-		MIT1002_00128	0.84	-1.3
139,137	-		MIT1002_00128	0.88	-0.1
139,157	+		MIT1002_00128	0.89	+1.4
139,222	-				-1.0
139,244	+				-0.6
139,252	-				-0.1
139,287	+				-0.3
139,287	+				-0.2
139,287	+				-0.5
139,287	+				+0.9
139,287	+				-0.5
139,295	-				-0.5
139,295	-				+0.9
139,295	-				-0.8
139,295	-				-0.7
139,300	+				+0.5
139,335	+				+1.0
139,348	+				-2.5
139,361	+				-0.3
139,363	+				+3.4
139,363	+				+0.6
139,363	+				+1.0
139,371	-				+0.5
139,371	-				-0.1
139,371	-				+0.0
139,371	-				-1.3
139,371	-				-3.1
139,373	+				-2.8
139,373	+				-1.0
139,373	+				+0.0
139,373	+				-0.4
139,381	-				+2.0
139,406	+				+1.4
139,414	-				-0.4
139,414	-				+0.0
139,555	-		MIT1002_00129	0.21	-0.6
139,569	-		MIT1002_00129	0.22	+2.2
139,590	-		MIT1002_00129	0.25	+1.1
139,610	+		MIT1002_00129	0.27	-0.7
139,632	-		MIT1002_00129	0.29	+0.1
139,643	+		MIT1002_00129	0.31	+1.3
139,691	+		MIT1002_00129	0.36	-0.5
139,788	+		MIT1002_00129	0.47	+0.8
139,789	-		MIT1002_00129	0.47	-0.8
139,796	-		MIT1002_00129	0.48	+1.0
139,796	-		MIT1002_00129	0.48	+1.0
139,796	-		MIT1002_00129	0.48	+0.6
139,813	+		MIT1002_00129	0.50	+1.6
139,821	-		MIT1002_00129	0.51	-0.4
139,847	-		MIT1002_00129	0.54	-0.5
139,915	+		MIT1002_00129	0.61	-1.1
139,989	-		MIT1002_00129	0.70	+1.4
140,039	-		MIT1002_00129	0.75	+0.9
140,115	-		MIT1002_00129	0.84	+0.9
140,118	-		MIT1002_00129	0.84	+0.1
140,175	+				+1.4
140,175	+				-0.9
140,175	+				+0.3
140,175	+				-1.5
140,183	-				+1.0
140,183	-				-1.5
140,183	-				-1.0
140,183	-				-1.6
140,183	-				-0.5
140,212	+				-0.5
140,212	+				+0.4
140,212	+				-2.3
140,212	+				+0.8
140,220	-				+0.8
140,220	-				+1.6
140,220	-				-0.0
140,220	-				-2.8
140,220	-				+1.9
140,220	-				+0.3
140,220	-				-0.6
140,220	-				+0.3
140,277	-				-1.1
140,368	+				-0.9
140,375	+				-0.5
140,410	+				+2.8
140,448	+				-3.5
140,537	+		MIT1002_00130	0.17	-1.2
140,558	+		MIT1002_00130	0.21	+0.5
140,588	+		MIT1002_00130	0.26	+0.1
140,596	-		MIT1002_00130	0.27	+0.3
140,596	-		MIT1002_00130	0.27	-0.6
140,596	-		MIT1002_00130	0.27	+0.1
140,596	-		MIT1002_00130	0.27	+0.1
140,596	-		MIT1002_00130	0.27	+0.5
140,598	+		MIT1002_00130	0.27	+0.3
140,603	+		MIT1002_00130	0.28	-0.2
140,604	-		MIT1002_00130	0.28	-0.2
140,627	+		MIT1002_00130	0.32	-0.1
140,659	+		MIT1002_00130	0.37	+0.4
140,660	+		MIT1002_00130	0.37	+0.4
140,813	-		MIT1002_00130	0.63	+0.2
140,827	-		MIT1002_00130	0.65	-0.2
140,914	+		MIT1002_00130	0.80	-0.1
140,914	+		MIT1002_00130	0.80	+0.9
140,914	+		MIT1002_00130	0.80	-2.7
140,924	+		MIT1002_00130	0.81	+1.2
140,945	+		MIT1002_00130	0.85	+0.8
140,957	+		MIT1002_00130	0.87	-0.7
140,992	-				+1.3
141,006	-				+0.4
141,141	+				+1.2
141,141	+				-0.3
141,150	-				-0.2
141,170	+				-2.3